RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPEM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041165

Ensembl transcript IDs: ENSMUST00000045771.7

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp GCGCCGGGGTATTTCAGGGACATTTGCTGGACCCAGAAAGGATGGTaGGACAGGCTGGCCCTGTGCTTGCTCACCCTCAACACATCCCCC +
Preference number: 5 (lower is better)
Translates to: APGYFRDICWTQKGW*DRLALCLLTLNTSP
Trigger: GGGGGATGTGTTGAGGGTGAGCAAGCACAGGGCCAGCCTGTCTCACCATCCTTTCTGGGTCCAGCAAATGTCCCTGAAATACCCCGGCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS TCA 90 bp TATACACATAGGCCTCTAGGCCCTGGTCTGACCGGATTTCCGATTTaGGAGGCCTGGCCTCTACTGCTGGCTGGAAGCGGATGGTCTGGG +
Preference number: 5 (lower is better)
Translates to: YTHRPLGPGLTGFPI*EAWPLLLAGSGWSG
Trigger: CCCAGACCATCCGCTTCCAGCCAGCAGTAGAGGCCAGGCCTCTCAAATCGGAAATCCGGTCAGACCAGGGCCTAGAGGCCTATGTGTATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS GCA 90 bp TTTGCTGGACCCAGAAAGGATGGTGAGACAGGCTGGCCCTGTGCTTaGTCACCCTCAACACATCCCCCTGACCCTGCCGCATTGTTTTTA +
Preference number: 5 (lower is better)
Translates to: FAGPRKDGETGWPCA*SPSTHPPDPAALFL
Trigger: TAAAAACAATGCGGCAGGGTCAGGGGGATGTGTTGAGGGTGAGCAAGCACAGGGCCAGCCTGTCTCACCATCCTTTCTGGGTCCAGCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS TCA 90 bp CAGAGACCAAGGGGTAACAGTGGGACAGAGCCTCCACCTCCTGGGTaGGTTCTCGTAACCTTCTCCTCACATCTCGGGCATCATAGACTA +
Preference number: 5 (lower is better)
Translates to: QRPRGNSGTEPPPPG*VLVTFSSHLGHHRL
Trigger: TAGTCTATGATGCCCGAGATGTGAGGAGAAGGTTACGAGAACTCACCCAGGAGGTGGAGGCTCTGTCCCACTGTTACCCCTTGGTCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS CCA 90 bp CCCCTGACCCTGCCGCATTGTTTTTATGGCTCAAAGCCTCTGGACTaGGAGGTGGAGGATTTACAGTATACACATAGGCCTCTAGGCCCT +
Preference number: 5 (lower is better)
Translates to: PLTLPHCFYGSKPLD*EVEDLQYTHRPLGP
Trigger: AGGGCCTAGAGGCCTATGTGTATACTGTAAATCCTCCACCTCCCAGTCCAGAGGCTTTGAGCCATAAAAACAATGCGGCAGGGTCAGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS TCA 90 bp CAATCCTTAGAGTCATTCCAGTGGCGGGAACAGATTGCAGGGTGCTaGTGTGGAGGTTTCTCATCATCAGTATCAGGGGCCCAAGCTATG +
Preference number: 5 (lower is better)
Translates to: QSLESFQWREQIAGC*CGGFSSSVSGAQAM
Trigger: CATAGCTTGGGCCCCTGATACTGATGATGAGAAACCTCCACATCAGCACCCTGCAATCTGTTCCCGCCACTGGAATGACTCTAAGGATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS GCA 90 bp AAAGCCTTCCCAATCCTTAGAGTCATTCCAGTGGCGGGAACAGATTaGAGGGTGCTGATGTGGAGGTTTCTCATCATCAGTATCAGGGGC +
Preference number: 5 (lower is better)
Translates to: KAFPILRVIPVAGTD*RVLMWRFLIISIRG
Trigger: GCCCCTGATACTGATGATGAGAAACCTCCACATCAGCACCCTGCAATCTGTTCCCGCCACTGGAATGACTCTAAGGATTGGGAAGGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS TCA 90 bp GCTGGACCAGCTTCCCAAGTGAAGTACTGGTTTCTTTTTCACAAATaGTATGGAACATTCGGTGTAAGAGGATGCGGATTCGGCTCCAGA +
Preference number: 5 (lower is better)
Translates to: AGPASQVKYWFLFHK*YGTFGVRGCGFGSR
Trigger: TCTGGAGCCGAATCCGCATCCTCTTACACCGAATGTTCCATATCATTTGTGAAAAAGAAACCAGTACTTCACTTGGGAAGCTGGTCCAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS TCA 90 bp TTTGGGGTAGGTCTGCTTCCTCAAGGGCTGGACCAGCTTCCCAAGTaGAGTACTGGTTTCTTTTTCACAAATGATATGGAACATTCGGTG +
Preference number: 5 (lower is better)
Translates to: FGVGLLPQGLDQLPK*STGFFFTNDMEHSV
Trigger: CACCGAATGTTCCATATCATTTGTGAAAAAGAAACCAGTACTTCACTTGGGAAGCTGGTCCAGCCCTTGAGGAAGCAGACCTACCCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS CCA 90 bp ACCAGCTTCCCAAGTGAAGTACTGGTTTCTTTTTCACAAATGATATaGAACATTCGGTGTAAGAGGATGCGGATTCGGCTCCAGAGCAGG +
Preference number: 5 (lower is better)
Translates to: TSFPSEVLVSFSQMI*NIRCKRMRIRLQSR
Trigger: CCTGCTCTGGAGCCGAATCCGCATCCTCTTACACCGAATGTTCCATATCATTTGTGAAAAAGAAACCAGTACTTCACTTGGGAAGCTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS GCA 72 bp CCCAGAAAGGATGGTGAGACAGGCTGGCCCTGTGCTTaGTCACCCTCAACACATCCCCCTGACCCTGCCGCA +
Preference number: 6 (lower is better)
Translates to: PRKDGETGWPCA*SPSTHPPDPAA
Trigger: TGCGGCAGGGTCAGGGGGATGTGTTGAGGGTGAGCAAGCACAGGGCCAGCCTGTCTCACCATCCTTTCTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS TCA 72 bp AGGCCTCTAGGCCCTGGTCTGACCGGATTTCCGATTTaGGAGGCCTGGCCTCTACTGCTGGCTGGAAGCGGA +
Preference number: 6 (lower is better)
Translates to: RPLGPGLTGFPI*EAWPLLLAGSG
Trigger: TCCGCTTCCAGCCAGCAGTAGAGGCCAGGCCTCTCAAATCGGAAATCCGGTCAGACCAGGGCCTAGAGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS CAA 72 bp GTTTCCCATGTCCTGGCAGTTGTTGATGTTGGGGTTTaGATACGAGGCCCACCCAGGCCGAGGCCGCTCAGC +
Preference number: 6 (lower is better)
Translates to: VSHVLAVVDVGV*IRGPPRPRPLS
Trigger: GCTGAGCGGCCTCGGCCTGGGTGGGCCTCGTATCAAAACCCCAACATCAACAACTGCCAGGACATGGGAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS TCA 72 bp CTGGCCCTGTGCTTGCTCACCCTCAACACATCCCCCTaGCCCTGCCGCATTGTTTTTATGGCTCAAAGCCTC +
Preference number: 6 (lower is better)
Translates to: LALCLLTLNTSP*PCRIVFMAQSL
Trigger: GAGGCTTTGAGCCATAAAAACAATGCGGCAGGGTCAGGGGGATGTGTTGAGGGTGAGCAAGCACAGGGCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS CCA 72 bp GATACACCCAATCTTTGCCTGTCCCCTCAGCTGCGCTaGATCCAGAGACCAAGGGGTAACAGTGGGACAGAG +
Preference number: 6 (lower is better)
Translates to: DTPNLCLSPQLR*IQRPRGNSGTE
Trigger: CTCTGTCCCACTGTTACCCCTTGGTCTCTGGATCCAGCGCAGCTGAGGGGACAGGCAAAGATTGGGTGTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS CAA 90 bp CCCTGTGCTTGCTCACCCTCAACACATCCCCCTGACCCTGCCGCATaGTTTTTATGGCTCAAAGCCTCTGGACTGGGAGGTGGAGGATTT +
Preference number: 6 (lower is better)
Translates to: PCACSPSTHPPDPAA*FLWLKASGLGGGGF
Trigger: AAATCCTCCACCTCCCAGTCCAGAGGCTTTGAGCCATAAAAACAATGCGGCAGGGTCAGGGGGATGTGTTGAGGGTGAGCAAGCACAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS TCA 72 bp GAGTCATTCCAGTGGCGGGAACAGATTGCAGGGTGCTaGTGTGGAGGTTTCTCATCATCAGTATCAGGGGCC +
Preference number: 6 (lower is better)
Translates to: ESFQWREQIAGC*CGGFSSSVSGA
Trigger: GGCCCCTGATACTGATGATGAGAAACCTCCACATCAGCACCCTGCAATCTGTTCCCGCCACTGGAATGACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS CCA 72 bp TCAACACATCCCCCTGACCCTGCCGCATTGTTTTTATaGCTCAAAGCCTCTGGACTGGGAGGTGGAGGATTT +
Preference number: 6 (lower is better)
Translates to: STHPPDPAALFL*LKASGLGGGGF
Trigger: AAATCCTCCACCTCCCAGTCCAGAGGCTTTGAGCCATAAAAACAATGCGGCAGGGTCAGGGGGATGTGTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS CCA 72 bp CTGCCGCATTGTTTTTATGGCTCAAAGCCTCTGGACTaGGAGGTGGAGGATTTACAGTATACACATAGGCCT +
Preference number: 6 (lower is better)
Translates to: LPHCFYGSKPLD*EVEDLQYTHRP
Trigger: AGGCCTATGTGTATACTGTAAATCCTCCACCTCCCAGTCCAGAGGCTTTGAGCCATAAAAACAATGCGGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS CAA 72 bp ATCCTGAGTCCAAGGTTCCCACACCTCCTGCATAGATaGAAAGCCTTCCCAATCCTTAGAGTCATTCCAGTG +
Preference number: 6 (lower is better)
Translates to: ILSPRFPHLLHR*KAFPILRVIPV
Trigger: CACTGGAATGACTCTAAGGATTGGGAAGGCTTTCAATCTATGCAGGAGGTGTGGGAACCTTGGACTCAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7
CDS TCA 72 bp GCTTCCCAAGTGAAGTACTGGTTTCTTTTTCACAAATaGTATGGAACATTCGGTGTAAGAGGATGCGGATTC +
Preference number: 6 (lower is better)
Translates to: ASQVKYWFLFHK*YGTFGVRGCGF
Trigger: GAATCCGCATCCTCTTACACCGAATGTTCCATATCATTTGTGAAAAAGAAACCAGTACTTCACTTGGGAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045771.7