Pregenerated sensors for SPEF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027329Ensembl transcript IDs: ENSMUST00000028801.8, ENSMUST00000110218.9, ENSMUST00000127987.2
Found 135 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGAGCAGCTCGCTCCGCCCTCCCAACCCTGCGTCGGCAGGTGAGTaGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCC | + |
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Preference number: 1 (lower is better) Translates to: VSSSLRPPNPASAGE*VGRGVWARAGTGKP Trigger: GGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCACTCACCTGCCGACGCAGGGTTGGGAGGGCGGAGCGAGCTGCTCAC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR GCA 90 bp | GGCGGGTACTGGGAAGCCCGGCGCAGCCCTGGCACCGCTCACCGCTaGTTGCGCTCGGCCTGCTGGAGCCGCCGGGAGAGATCATCGATG | + |
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Preference number: 1 (lower is better) Translates to: GGYWEARRSPGTAHR*LRSACWSRRERSSM Trigger: CATCGATGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGGGCTGCGCCGGGCTTCCCAGTACCCGCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR GCA 90 bp | GGTACTGGGAAGCCCGGCGCAGCCCTGGCACCGCTCACCGCTGCTTaGGCTCGGCCTGCTGGAGCCGCCGGGAGAGATCATCGATGCGCA | + |
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Preference number: 1 (lower is better) Translates to: GTGKPGAALAPLTAA*ARPAGAAGRDHRCA Trigger: TGCGCATCGATGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGGGCTGCGCCGGGCTTCCCAGTACC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR GCA 90 bp | GCCCGGCGCAGCCCTGGCACCGCTCACCGCTGCTTGCGCTCGGCCTaGTGGAGCCGCCGGGAGAGATCATCGATGCGCACGTTCTTAAGT | + |
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Preference number: 1 (lower is better) Translates to: ARRSPGTAHRCLRSA*WSRRERSSMRTFLS Trigger: ACTTAAGAACGTGCGCATCGATGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGGGCTGCGCCGGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR CCA 90 bp | CGGCGCAGCCCTGGCACCGCTCACCGCTGCTTGCGCTCGGCCTGCTaGAGCCGCCGGGAGAGATCATCGATGCGCACGTTCTTAAGTTGG | + |
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Preference number: 1 (lower is better) Translates to: RRSPGTAHRCLRSAC*SRRERSSMRTFLSW Trigger: CCAACTTAAGAACGTGCGCATCGATGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGGGCTGCGCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR CCA 90 bp | AGACAGAGGACCGCCTCTCCAGGCCCAGCGCCGGGAGCTTCAAAGTaGTTTGGGAGATCATGCGATGTACAGGCTTTCTGGGCTGTGGAA | + |
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Preference number: 1 (lower is better) Translates to: RQRTASPGPAPGASK*FGRSCDVQAFWAVE Trigger: TTCCACAGCCCAGAAAGCCTGTACATCGCATGATCTCCCAAACCACTTTGAAGCTCCCGGCGCTGGGCCTGGAGAGGCGGTCCTCTGTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR CCA 90 bp | ATGAAGCTATCTTCTATGCTGAGAAAGGAACCGGTTCTAGAGGAGTaGAACGAGACAGAGGACCGCCTCTCCAGGCCCAGCGCCGGGAGC | + |
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Preference number: 1 (lower is better) Translates to: MKLSSMLRKEPVLEE*NETEDRLSRPSAGS Trigger: GCTCCCGGCGCTGGGCCTGGAGAGGCGGTCCTCTGTCTCGTTCCACTCCTCTAGAACCGGTTCCTTTCTCAGCATAGAAGATAGCTTCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR TCA 90 bp | ACTCCCGCCTACTTCAACACCTTATCCCTTCCTCTCCAGCTGCTGTaGTTTCCAGCCCTAAAACTGGTCCCCGGTCAGCACTCAGGATGG | + |
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Preference number: 1 (lower is better) Translates to: TPAYFNTLSLPLQLL*FPALKLVPGQHSGW Trigger: CCATCCTGAGTGCTGACCGGGGACCAGTTTTAGGGCTGGAAATCACAGCAGCTGGAGAGGAAGGGATAAGGTGTTGAAGTAGGCGGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR GCA 90 bp | GAGGACAGCTGGGCGAAAGGGATAAAGGACAAGCCAGGAACTCACTaGCTTTGGGGATCCATACAGGCAGAAAGAGAAGGCAGGCACAGG | + |
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Preference number: 1 (lower is better) Translates to: EDSWAKGIKDKPGTH*LWGSIQAEREGRHR Trigger: CCTGTGCCTGCCTTCTCTTTCTGCCTGTATGGATCCCCAAAGGCAGTGAGTTCCTGGCTTGTCCTTTATCCCTTTCGCCCAGCTGTCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR GCA 90 bp | TTAATGGAGACAACTCTGCCCTATCTTCCCAGGCACTCCTTAGAATaGTCCGTGAGAGGAGAGCGACTGCACAGCTGGGTGCCTCCCTTA | + |
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Preference number: 1 (lower is better) Translates to: LMETTLPYLPRHSLE*SVRGERLHSWVPPL Trigger: TAAGGGAGGCACCCAGCTGTGCAGTCGCTCTCCTCTCACGGAGCATTCTAAGGAGTGCCTGGGAAGATAGGGCAGAGTTGTCTCCATTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR TCA 90 bp | GTTTGGGAGATCATGCGATGTACAGGCTTTCTGGGCTGTGGAAAGTaGTCCTTTTTCCTGGCCCAGATGGAGTGTAAGGAGGAGGATCAG | + |
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Preference number: 1 (lower is better) Translates to: VWEIMRCTGFLGCGK*SFFLAQMECKEEDQ Trigger: CTGATCCTCCTCCTTACACTCCATCTGGGCCAGGAAAAAGGATCACTTTCCACAGCCCAGAAAGCCTGTACATCGCATGATCTCCCAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR CCA 90 bp | GGAGCTTCAAAGTGGTTTGGGAGATCATGCGATGTACAGGCTTTCTaGGCTGTGGAAAGTGATCCTTTTTCCTGGCCCAGATGGAGTGTA | + |
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Preference number: 1 (lower is better) Translates to: GASKWFGRSCDVQAF*AVESDPFSWPRWSV Trigger: TACACTCCATCTGGGCCAGGAAAAAGGATCACTTTCCACAGCCCAGAAAGCCTGTACATCGCATGATCTCCCAAACCACTTTGAAGCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR GCA 90 bp | TGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCGGCACCGCTCACCGCTaGTTGCGCTCGGCCTGCTGG | + |
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Preference number: 2 (lower is better) Translates to: WVGRGVWARAGTGKPGAAGTAHR*LRSACW Trigger: CCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCC...GGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCA 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR-3UTR CCA 90 bp | GGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCCTGGCATTGCGCTCGGCCTGCTaGAGCCGCCGGGAGAGATCA | + |
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Preference number: 2 (lower is better) Translates to: GRGVWARAGTGKPGAALALRSAC*SRRERS Trigger: TGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAA...TGCCAGGGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR-3UTR CCA 90 bp | CGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCCTGGCACCGCTCGCACGTTCTTAAGTTaGAGCAGATGTTCCAGACGC | + |
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Preference number: 2 (lower is better) Translates to: RRLGSGGYWEARRSPGTARTFLS*SRCSRR Trigger: GCGTCTGGAACATCTGCTCCAACTTAAGAACGTGCG...AGCGGTGCCAGGGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGGCCCAGCGCCGGGAGCTTCAAAGTGGTTTGGGAGATCATGCGATGTACAGGCGTCGGCAGGTGAGTaGGTGGGTCGCGGCGTCTGG | + |
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Preference number: 2 (lower is better) Translates to: PGPAPGASKWFGRSCDVQASAGE*VGRGVW Trigger: CCAGACGCCGCGACCCACCCACTCACCTGCCGACGC...CTGTACATCGCATGATCTCCCAAACCACTTTGAAGCTCCCGGCGCTGGGCCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR TCA 90 bp | ACTCACTGCCTTTGGGGATCCATACAGGCAGAAAGAGAAGGCAGGCACAGGAAACCCTGCGTCGGCAGGTaGGTGGGTGGGTCGCGGCGT | + |
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Preference number: 2 (lower is better) Translates to: THCLWGSIQAEREGRHRKPCVGR*VGGSRR Trigger: ACGCCGCGACCCACCCACTCACCTGCCGACGCAGGG...TTTCCTGTGCCTGCCTTCTCTTTCTGCCTGTATGGATCCCCAAAGGCAGTGAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR CAA 90 bp | AGAGGACCGCCTCTCCAGGCCCAGCGCCGGGAGCTTCAAAGTGGTTaGGGAGATCATGCGATGTACAGGCTTTCTGGGCTGTGGAAAGTG | + |
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Preference number: 2 (lower is better) Translates to: RGPPLQAQRRELQSG*GDHAMYRLSGLWKV Trigger: CACTTTCCACAGCCCAGAAAGCCTGTACATCGCATGATCTCCCAAACCACTTTGAAGCTCCCGGCGCTGGGCCTGGAGAGGCGGTCCTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR TCA 90 bp | GTGCTAGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATTATCATCCCCTGCGTCGGCAGGTaGGTGGGTGGGTCGCGGCGT | + |
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Preference number: 2 (lower is better) Translates to: VLEAGCHTSQNLPTGIIIPCVGR*VGGSRR Trigger: ACGCCGCGACCCACCCACTCACCTGCCGACGCAGGG...GATGATAATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCTAGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR CCA 90 bp | ATGGAGGTAGAGGAGGGTGTTGGAGACCCTGGAATTGGAGTGATCAACAGTTGTGCGTCGGCAGGTGAGTaGGTGGGTCGCGGCGTCTGG | + |
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Preference number: 2 (lower is better) Translates to: MEVEEGVGDPGIGVINSCASAGE*VGRGVW Trigger: CCAGACGCCGCGACCCACCCACTCACCTGCCGACGC...ACAACTGTTGATCACTCCAATTCCAGGGTCTCCAACACCCTCCTCTACCTCCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR TCA 90 bp | ATGGAGGTAGAGGAGGGTGTTGGAGACCCTGGAATTGGAGTGATCAACAGTTGTCTGGGCTGTGGAAAGTaGTCCTTTTTCCTGGCCCAG | + |
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Preference number: 2 (lower is better) Translates to: MEVEEGVGDPGIGVINSCLGCGK*SFFLAQ Trigger: CTGGGCCAGGAAAAAGGATCACTTTCCACAGCCCAG...ACAACTGTTGATCACTCCAATTCCAGGGTCTCCAACACCCTCCTCTACCTCCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR TCA 90 bp | AACTCACTGCCTTTGGGGATCCATACAGGCAGAAAGAGAAGGCAGGCACAGGAACCTCTCCAGCTGCTGTaGTTTCCAGCCCTAAAACTG | + |
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Preference number: 2 (lower is better) Translates to: NSLPLGIHTGRKRRQAQEPLQLL*FPALKL Trigger: CAGTTTTAGGGCTGGAAATCACAGCAGCTGGAGAGG...TTCCTGTGCCTGCCTTCTCTTTCTGCCTGTATGGATCCCCAAAGGCAGTGAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR CCA 90 bp | CTCCCTTACTCCCGCCTACTTCAACACCTTATCCCTTCCTCTCCAGCTGCTGTGAGTGATCCTTTTTCCTaGCCCAGATGGAGTGTAAGG | + |
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Preference number: 2 (lower is better) Translates to: LPYSRLLQHLIPSSPAAVSDPFS*PRWSVR Trigger: CCTTACACTCCATCTGGGCCAGGAAAAAGGATCACT...CACAGCAGCTGGAGAGGAAGGGATAAGGTGTTGAAGTAGGCGGGAGTAAGGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR CCA 90 bp | AACTCACTGCCTTTGGGGATCCATACAGGCAGAAAGAGAAGGCAGGCACAGGAAGGTCAGCACTCAGGATaGGCAAGAGAATTCCTCAGC | + |
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Preference number: 2 (lower is better) Translates to: NSLPLGIHTGRKRRQAQEGQHSG*AREFLS Trigger: GCTGAGGAATTCTCTTGCCCATCCTGAGTGCTGACC...TTCCTGTGCCTGCCTTCTCTTTCTGCCTGTATGGATCCCCAAAGGCAGTGAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR TCA 90 bp | GCACAAGAGTTTCTCCCATGTAATATGCCTATGAATGGAGTTGCCAGGCCTGTCCTGGGCTGTGGAAAGTaGTCCTTTTTCCTGGCCCAG | + |
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Preference number: 2 (lower is better) Translates to: AQEFLPCNMPMNGVARPVLGCGK*SFFLAQ Trigger: CTGGGCCAGGAAAAAGGATCACTTTCCACAGCCCAG...GACAGGCCTGGCAACTCCATTCATAGGCATATTACATGGGAGAAACTCTTGTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR GCA 90 bp | CACCCAGTGCTAGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATTAAGCCAGGAACTCACTaGCTTTGGGGATCCATACAG | + |
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Preference number: 2 (lower is better) Translates to: HPVLEAGCHTSQNLPTGIKPGTH*LWGSIQ Trigger: CTGTATGGATCCCCAAAGGCAGTGAGTTCCTGGCTT...AATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCTAGCACTGGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR CCA 90 bp | TCACCCAGTGCTAGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATGGAACTCACTGCCTTTaGGGATCCATACAGGCAGAA | + |
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Preference number: 2 (lower is better) Translates to: SPSARSRLSHVTKSSHWHGTHCL*GSIQAE Trigger: TTCTGCCTGTATGGATCCCCAAAGGCAGTGAGTTCC...ATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCTAGCACTGGGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR GCA 90 bp | ATGGAGGTAGAGGAGGGTGTTGGAGACCCTGGAATTGGAGTGATCAACAGTTGTGCCTATGAATGGAGTTaGCAGGCCTGTCAAGTGACA | + |
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Preference number: 2 (lower is better) Translates to: MEVEEGVGDPGIGVINSCAYEWS*QACQVT Trigger: TGTCACTTGACAGGCCTGGCAACTCCATTCATAGGC...ACAACTGTTGATCACTCCAATTCCAGGGTCTCCAACACCCTCCTCTACCTCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR CCA 90 bp | ACTCACTGCCTTTGGGGATCCATACAGGCAGAAAGAGAAGGCAGGCACAGGAAAGATGTACAGGCTTTCTaGGCTGTGGAAAGTGATCCT | + |
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Preference number: 2 (lower is better) Translates to: THCLWGSIQAEREGRHRKDVQAF*AVESDP Trigger: AGGATCACTTTCCACAGCCCAGAAAGCCTGTACATC...TTTCCTGTGCCTGCCTTCTCTTTCTGCCTGTATGGATCCCCAAAGGCAGTGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR CCA 90 bp | GCACAAGAGTTTCTCCCATGTAATATGCCTATGAATGGAGTTGCCAGGCCTGTCAGGCTTTCTGGGCTGTaGAAAGTGATCCTTTTTCCT | + |
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Preference number: 2 (lower is better) Translates to: AQEFLPCNMPMNGVARPVRLSGL*KVILFP Trigger: AGGAAAAAGGATCACTTTCCACAGCCCAGAAAGCCT...GACAGGCCTGGCAACTCCATTCATAGGCATATTACATGGGAGAAACTCTTGTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR CCA 90 bp | GCACAAGAGTTTCTCCCATGTAATATGCCTATGAATGGAGTTGCCAGGCCTGTCATTGAGACCAGTGTGTaGACAGGGTTGAGAGTCATA | + |
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Preference number: 2 (lower is better) Translates to: AQEFLPCNMPMNGVARPVIETSV*TGLRVI Trigger: TATGACTCTCAACCCTGTCCACACACTGGTCTCAAT...GACAGGCCTGGCAACTCCATTCATAGGCATATTACATGGGAGAAACTCTTGTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR TCA 90 bp | CCATCACTTCAATTCTGTATGATTGTTACAGTGTATCTCCCAGAACTCAGGGCACAACCATCCATAAATTaGGACCAGTGTGTGGACAGG | + |
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Preference number: 2 (lower is better) Translates to: PSLQFCMIVTVYLPELRAQPSIN*DQCVDR Trigger: CCTGTCCACACACTGGTCTCAATTTATGGATGGTTG...TGCCCTGAGTTCTGGGAGATACACTGTAACAATCATACAGAATTGAAGTGATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR-3UTR TCA 90 bp | TTCTGTATGATTGTTACAGTGTATCTCCCAGAACTCAGGGCACAAGAGTTTCTCATCGTAGCTTGGGTTTaGACAAGATTAGAGGACACT | + |
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Preference number: 2 (lower is better) Translates to: FCMIVTVYLPELRAQEFLIVAWV*TRLEDT Trigger: AGTGTCCTCTAATCTTGTTCAAACCCAAGCTACGAT...GAGAAACTCTTGTGCCCTGAGTTCTGGGAGATACACTGTAACAATCATACAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR CCA 72 bp | CCTGCGTCGGCAGGTGAGTGGGTGGGTCGCGGCGTCTaGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: PASAGEWVGRGV*ARAGTGKPGAA Trigger: GGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCACTCACCTGCCGACGCAGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR GCA 72 bp | TGGGAAGCCCGGCGCAGCCCTGGCACCGCTCACCGCTaGTTGCGCTCGGCCTGCTGGAGCCGCCGGGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: WEARRSPGTAHR*LRSACWSRRER Trigger: TCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGGGCTGCGCCGGGCTTCCCA 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR GCA 72 bp | AAGCCCGGCGCAGCCCTGGCACCGCTCACCGCTGCTTaGGCTCGGCCTGCTGGAGCCGCCGGGAGAGATCAT | + |
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Preference number: 3 (lower is better) Translates to: KPGAALAPLTAA*ARPAGAAGRDH Trigger: ATGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGGGCTGCGCCGGGCTT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR GCA 72 bp | AGCCCTGGCACCGCTCACCGCTGCTTGCGCTCGGCCTaGTGGAGCCGCCGGGAGAGATCATCGATGCGCACG | + |
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Preference number: 3 (lower is better) Translates to: SPGTAHRCLRSA*WSRRERSSMRT Trigger: CGTGCGCATCGATGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGGGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR CCA 72 bp | CCTGGCACCGCTCACCGCTGCTTGCGCTCGGCCTGCTaGAGCCGCCGGGAGAGATCATCGATGCGCACGTTC | + |
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Preference number: 3 (lower is better) Translates to: PGTAHRCLRSAC*SRRERSSMRTF Trigger: GAACGTGCGCATCGATGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
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| 3UTR CCA 72 bp | ACCGCCTCTCCAGGCCCAGCGCCGGGAGCTTCAAAGTaGTTTGGGAGATCATGCGATGTACAGGCTTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: TASPGPAPGASK*FGRSCDVQAFW Trigger: CCAGAAAGCCTGTACATCGCATGATCTCCCAAACCACTTTGAAGCTCCCGGCGCTGGGCCTGGAGAGGCGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR CCA 72 bp | TGGGCTGTGGAAAGTGATCCTTTTTCCTGGCCCAGATaGAGTGTAAGGAGGAGGATCAGTCCCCGGCCTCGG | + |
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Preference number: 3 (lower is better) Translates to: WAVESDPFSWPR*SVRRRISPRPR Trigger: CCGAGGCCGGGGACTGATCCTCCTCCTTACACTCCATCTGGGCCAGGAAAAAGGATCACTTTCCACAGCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR CCA 72 bp | CTCTCCAGGCCCAGCGCCGGGAGCTTCAAAGTGGTTTaGGAGATCATGCGATGTACAGGCTTTCTGGGCTGT | + |
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Preference number: 3 (lower is better) Translates to: LSRPSAGSFKVV*EIMRCTGFLGC Trigger: ACAGCCCAGAAAGCCTGTACATCGCATGATCTCCCAAACCACTTTGAAGCTCCCGGCGCTGGGCCTGGAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR GCA 72 bp | ACAACTCTGCCCTATCTTCCCAGGCACTCCTTAGAATaGTCCGTGAGAGGAGAGCGACTGCACAGCTGGGTG | + |
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Preference number: 3 (lower is better) Translates to: TTLPYLPRHSLE*SVRGERLHSWV Trigger: CACCCAGCTGTGCAGTCGCTCTCCTCTCACGGAGCATTCTAAGGAGTGCCTGGGAAGATAGGGCAGAGTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR CCA 72 bp | TCTTCTATGCTGAGAAAGGAACCGGTTCTAGAGGAGTaGAACGAGACAGAGGACCGCCTCTCCAGGCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: SSMLRKEPVLEE*NETEDRLSRPS Trigger: GCTGGGCCTGGAGAGGCGGTCCTCTGTCTCGTTCCACTCCTCTAGAACCGGTTCCTTTCTCAGCATAGAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR GCA 72 bp | CCAGCGCCGGGAGCTTCAAAGTGGTTTGGGAGATCATaGGATGTACAGGCTTTCTGGGCTGTGGAAAGTGAT | + |
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Preference number: 3 (lower is better) Translates to: PAPGASKWFGRS*DVQAFWAVESD Trigger: ATCACTTTCCACAGCCCAGAAAGCCTGTACATCGCATGATCTCCCAAACCACTTTGAAGCTCCCGGCGCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR TCA 72 bp | ATCATGCGATGTACAGGCTTTCTGGGCTGTGGAAAGTaGTCCTTTTTCCTGGCCCAGATGGAGTGTAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: IMRCTGFLGCGK*SFFLAQMECKE Trigger: CTCCTTACACTCCATCTGGGCCAGGAAAAAGGATCACTTTCCACAGCCCAGAAAGCCTGTACATCGCATGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
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| 3UTR CCA 72 bp | AAGTGGTTTGGGAGATCATGCGATGTACAGGCTTTCTaGGCTGTGGAAAGTGATCCTTTTTCCTGGCCCAGA | + |
|
Preference number: 3 (lower is better) Translates to: KWFGRSCDVQAF*AVESDPFSWPR Trigger: TCTGGGCCAGGAAAAAGGATCACTTTCCACAGCCCAGAAAGCCTGTACATCGCATGATCTCCCAAACCACTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| 3UTR-3UTR CAA 90 bp | GAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATTATCATCAATGTAAGGAACTCACTGCCTTaGGGGATCCATACAGGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: EAGCHTSQNLPTGIIINVRNSLP*GIHTGR Trigger: TCTGCCTGTATGGATCCCCAAAGGCAGTGAGTTCCT...TACATTGATGATAATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| 3UTR TCA 72 bp | GCCTGTCAAGTGACATGTAGCCAACCATCCATAAATTaGGACCAGTGTGTGGACAGGGTTGAGAGTCATACA | + |
|
Preference number: 3 (lower is better) Translates to: ACQVTCSQPSIN*DQCVDRVESHT Trigger: TGTATGACTCTCAACCCTGTCCACACACTGGTCTCAATTTATGGATGGTTGGCTACATGTCACTTGACAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| 3UTR CCA 72 bp | AGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTaGCATTATCATCAATGTAATAATAGGCCCACAGGG | + |
|
Preference number: 3 (lower is better) Translates to: RSRLSHVTKSSH*HYHQCNNRPTG Trigger: CCCTGTGGGCCTATTATTACATTGATGATAATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| 3UTR GCA 72 bp | GTTATTTTAAGCTCATATATCTCTCTGTGCACCACATaGAGTCCTGGAGTTTATGGAGGTAGAGGAGGGTGT | + |
|
Preference number: 3 (lower is better) Translates to: VILSSYISLCTT*SPGVYGGRGGC Trigger: ACACCCTCCTCTACCTCCATAAACTCCAGGACTGCATGTGGTGCACAGAGAGATATATGAGCTTAAAATAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | GCAGCCCTGGCACCGCTCACCGCTGCTTGCGCTCGGCCTGCTGGAGCCGCCGGGAGCTTCTGGCGCCTCTaGCGCTCCTCCAGGCGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: AALAPLTAACARPAGAAGSFWRL*RSSRRC Trigger: GCAGCGCCTGGAGGAGCGGCAGAGGCGCCAGAAGCT...CCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGGGCTGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR GCA 90 bp | GTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCTGCTTGCGCTCGGCCTaGTGGAGCCGCCGGGAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: VGGSRRLGSGGYWEARRSCLRSA*WSRRER Trigger: TCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCA...GCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCAC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | GTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCTGCTCTCCCAAGGCTaGGGCACCCTCTCCTCGAAC | + |
|
Preference number: 4 (lower is better) Translates to: VGGSRRLGSGGYWEARRSLLSQG*GTLSSN Trigger: GTTCGAGGAGAGGGTGCCCCAGCCTTGGGAGAGCAG...GCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCAC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR TCA 90 bp | GGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCCTGGCACCAGGACTCCGTCACTaGAGTCCCGGGAGAGGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: GRGVWARAGTGKPGAALAPGLRH*SPGRGF Trigger: GAAACCTCTCCCGGGACTTCAGTGACGGAGTCCTGG...TGCCAGGGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR CCA 90 bp | AGTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCTGCTCTCCCAAGGCTaGGGCACCCTCTCCTCGAAC | + |
|
Preference number: 4 (lower is better) Translates to: SGWVAASGLGRVLGSPAQLLSQG*GTLSSN Trigger: GTTCGAGGAGAGGGTGCCCCAGCCTTGGGAGAGCAG...CTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCACT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR TCA 90 bp | GTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCGGTGACCCCAGTTGCTaGGCTTCTGCTGGAGAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: VGGSRRLGSGGYWEARRSGDPSC*ASAGES Trigger: ACTCTCTCCAGCAGAAGCTCAGCAACTGGGGTCACC...GCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR TCA 90 bp | GGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCCTGGCAGGTGACCCCAGTTGCTaGGCTTCTGCTGGAGAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: GRGVWARAGTGKPGAALAGDPSC*ASAGES Trigger: ACTCTCTCCAGCAGAAGCTCAGCAACTGGGGTCACC...TGCCAGGGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR GCA 90 bp | GCCCGGCGCAGCCCTGGCACCGCTCACCGCTGCTTGCGCTCGGCCTGCTGGAGCTTCAGCGATCTGAGCTaGTCTCCCAAGGCTGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: ARRSPGTAHRCLRSACWSFSDLS*SPKAGA Trigger: TGCCCCAGCCTTGGGAGAGCAGCTCAGATCGCTGAA...GCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGGGCTGCGCCGGGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR TCA 90 bp | GTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCTCCTTTTCAGCGATCTaGGCTGCTCTCCCAAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: VGGSRRLGSGGYWEARRSSFSAI*AALPRL Trigger: CAGCCTTGGGAGAGCAGCTCAGATCGCTGAAAAGGA...GCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR GCA 90 bp | CTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCCTGGCACCGCTCACCGCCAGTTGCTGAGCTTCTaGTGGAGAGAGTTGGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: LGSGGYWEARRSPGTAHRQLLSF*WRELAG Trigger: CCCTGCCAACTCTCTCCAGCAGAAGCTCAGCAACTG...GCGGTGAGCGGTGCCAGGGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR GCA 90 bp | GAGGCACTAGTGAGCAGCTCGCTCCGCCCTCCCAACCCTGCGTCGGCAGGTGAGAGCTTCTGGCGCCTCTaGCGCTCCTCCAGGCGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: EALVSSSLRPPNPASAGESFWRL*RSSRRC Trigger: GCAGCGCCTGGAGGAGCGGCAGAGGCGCCAGAAGCT...CTCACCTGCCGACGCAGGGTTGGGAGGGCGGAGCGAGCTGCTCACTAGTGCCTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | GGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCCTGGCAGAGGCCAACAGCTCCTaGTCCTTTTCAGCGATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GRGVWARAGTGKPGAALAEANSS*SFSAIW Trigger: CCAGATCGCTGAAAAGGAGCAGGAGCTGTTGGCCTC...TGCCAGGGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR TCA 90 bp | GAGTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAACCTGTACTGTCTCTTaGGAGGCCAACAGCTCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: EWVGRGVWARAGTGKPGATCTVS*EANSSC Trigger: GCAGGAGCTGTTGGCCTCTCAAGAGACAGTACAGGT...TGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCACTC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR TCA 90 bp | TCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCCTGGCACCGCTCACCGACCTGTACTGTCTCTTaGGAGGCCAACAGCTCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: SGLGRVLGSPAQPWHRSPTCTVS*EANSSC Trigger: GCAGGAGCTGTTGGCCTCTCAAGAGACAGTACAGGT...CGGTGAGCGGTGCCAGGGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR GCA 90 bp | AGTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCAGTTGCTGAGCTTCTaGTGGAGAGAGTTGGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SGWVAASGLGRVLGSPAQQLLSF*WRELAG Trigger: CCCTGCCAACTCTCTCCAGCAGAAGCTCAGCAACTG...CTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCACT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR CCA 90 bp | GAGGCACTAGTGAGCAGCTCGCTCCGCCCTCCCAACCCTGCGTCGGCAGGTGAGTTGCGCTCGGCCTGCTaGAGCCGCCGGGAGAGATCA | + |
|
Preference number: 4 (lower is better) Translates to: EALVSSSLRPPNPASAGELRSAC*SRRERS Trigger: TGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAA...CTCACCTGCCGACGCAGGGTTGGGAGGGCGGAGCGAGCTGCTCACTAGTGCCTC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR TCA 90 bp | GTGAGTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGACCTTTCTGTTCAGGTaGCCCCAGTTGCTGAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: VSGWVAASGLGRVLGSPATFLFR*PQLLSF Trigger: GAAGCTCAGCAACTGGGGTCACCTGAACAGAAAGGT...CGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCACTCAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR TCA 90 bp | GAGTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAACCTTTCTGTTCAGGTaGCCCCAGTTGCTGAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: EWVGRGVWARAGTGKPGATFLFR*PQLLSF Trigger: GAAGCTCAGCAACTGGGGTCACCTGAACAGAAAGGT...TGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCACTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR GCA 90 bp | CACCGCTCACCGCTGCTTGCGCTCGGCCTGCTGGAGCCGCCGGGAGAGATCATCCGCTCCTCCAGGCGCTaGCTCAGTGGAATGAGCACT | + |
|
Preference number: 4 (lower is better) Translates to: HRSPLLALGLLEPPGEIIRSSRR*LSGMST Trigger: AGTGCTCATTCCACTGAGGCAGCGCCTGGAGGAGCG...GATGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR GCA 90 bp | TGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCTATCCATGTAGCCACTaGTATCCTGAGGAGCCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: WVGRGVWARAGTGKPGAAYPCSH*YPEEPA Trigger: AGCTGGCTCCTCAGGATAGCAGTGGCTACATGGATA...GGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR GCA 90 bp | GGAACGAGACAGAGGACCGCCTCTCCAGGCCCAGCGCCGGGAGCTTCAAAGTGGCGGCCCTCTCTGAGCTaGTCTCCCAAGGCTGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: GTRQRTASPGPAPGASKWRPSLS*SPKAGA Trigger: TGCCCCAGCCTTGGGAGAGCAGCTCAGAGAGGGCCG...CCACTTTGAAGCTCCCGGCGCTGGGCCTGGAGAGGCGGTCCTCTGTCTCGTTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | CCCTGGCACCGCTCACCGCTGCTTGCGCTCGGCCTGCTGGAGCCGCCGGGAGAGTTGCTGAGCTTCTGCTaGAGAGAGTTGGCAGGGACA | + |
|
Preference number: 4 (lower is better) Translates to: PWHRSPLLALGLLEPPGELLSFC*RELAGT Trigger: TGTCCCTGCCAACTCTCTCCAGCAGAAGCTCAGCAA...CTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGCGGTGAGCGGTGCCAGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR CCA 90 bp | GTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCTCCTTTTCAGCGATCTaGAGGACGAAGCTCGGATCA | + |
|
Preference number: 4 (lower is better) Translates to: VGGSRRLGSGGYWEARRSSFSAI*RTKLGS Trigger: TGATCCGAGCTTCGTCCTCCAGATCGCTGAAAAGGA...GCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGCCGCGACCCACCCAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR TCA 90 bp | CCCAACCCTGCGTCGGCAGGTGAGTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGCGCTTCACCTTCATCTaGAGGACCTGTACTGTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: PNPASAGEWVGRGVWARARFTFI*RTCTVS Trigger: AGAGACAGTACAGGTCCTTCAGATGAAGGTGAAGCG...CGCCCGAGCCCAGACGCCGCGACCCACCCACTCACCTGCCGACGCAGGGTTGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | CCCAACCCTGCGTCGGCAGGTGAGTGGGTGGGTCGCGGCGTCTGGGCTCGGGCGTATCCATGTAGCCACTaGTATCCTGAGGAGCCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: PNPASAGEWVGRGVWARAYPCSH*YPEEPA Trigger: AGCTGGCTCCTCAGGATAGCAGTGGCTACATGGATA...CGCCCGAGCCCAGACGCCGCGACCCACCCACTCACCTGCCGACGCAGGGTTGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | GCGTCTGGGCTCGGGCGGGTACTGGGAAGCCCGGCGCAGCCCTGGCACCGCTCATCTCCTCGAACCTTCTaGGGCAAACCCATATCCATG | + |
|
Preference number: 4 (lower is better) Translates to: ASGLGRVLGSPAQPWHRSSPRTF*GKPISM Trigger: CATGGATATGGGTTTGCCCCAGAAGGTTCGAGGAGA...TGAGCGGTGCCAGGGCTGCGCCGGGCTTCCCAGTACCCGCCCGAGCCCAGACGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR CCA 90 bp | GACAGAGGACCGCCTCTCCAGGCCCAGCGCCGGGAGCTTCAAAGTGGTTTGGGATTGCGCTCGGCCTGCTaGAGCCGCCGGGAGAGATCA | + |
|
Preference number: 4 (lower is better) Translates to: DRGPPLQAQRRELQSGLGLRSAC*SRRERS Trigger: TGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAA...TCCCAAACCACTTTGAAGCTCCCGGCGCTGGGCCTGGAGAGGCGGTCCTCTGTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR TCA 90 bp | GAGGCACTAGTGAGCAGCTCGCTCCGCCCTCCCAACCCTGCGTCGGCAGGTGAGACCTGTACTGTCTCTTaGGAGGCCAACAGCTCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: EALVSSSLRPPNPASAGETCTVS*EANSSC Trigger: GCAGGAGCTGTTGGCCTCTCAAGAGACAGTACAGGT...CTCACCTGCCGACGCAGGGTTGGGAGGGCGGAGCGAGCTGCTCACTAGTGCCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | CCAGGCCCAGCGCCGGGAGCTTCAAAGTGGTTTGGGAGATCATGCGATGTACAGAGCTTCTGGCGCCTCTaGCGCTCCTCCAGGCGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: PGPAPGASKWFGRSCDVQSFWRL*RSSRRC Trigger: GCAGCGCCTGGAGGAGCGGCAGAGGCGCCAGAAGCT...CTGTACATCGCATGATCTCCCAAACCACTTTGAAGCTCCCGGCGCTGGGCCTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | GAGGCACTAGTGAGCAGCTCGCTCCGCCCTCCCAACCCTGCGTCGGCAGGTGAGTTGCTGAGCTTCTGCTaGAGAGAGTTGGCAGGGACA | + |
|
Preference number: 4 (lower is better) Translates to: EALVSSSLRPPNPASAGELLSFC*RELAGT Trigger: TGTCCCTGCCAACTCTCTCCAGCAGAAGCTCAGCAA...CTCACCTGCCGACGCAGGGTTGGGAGGGCGGAGCGAGCTGCTCACTAGTGCCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR TCA 90 bp | CCTTCCTCTCCAGCTGCTGTGATTTCCAGCCCTAAAACTGGTCCCCGGTCAGCAACGGACGGCCCTCTCTaGGCTGCTCTCCCAAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: PSSPAAVISSPKTGPRSATDGPL*AALPRL Trigger: CAGCCTTGGGAGAGCAGCTCAGAGAGGGCCGTCCGT...TGCTGACCGGGGACCAGTTTTAGGGCTGGAAATCACAGCAGCTGGAGAGGAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | GAGGCACTAGTGAGCAGCTCGCTCCGCCCTCCCAACCCTGCGTCGGCAGGTGAGTCTCCTCGAACCTTCTaGGGCAAACCCATATCCATG | + |
|
Preference number: 4 (lower is better) Translates to: EALVSSSLRPPNPASAGESPRTF*GKPISM Trigger: CATGGATATGGGTTTGCCCCAGAAGGTTCGAGGAGA...CTCACCTGCCGACGCAGGGTTGGGAGGGCGGAGCGAGCTGCTCACTAGTGCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| 3UTR CAA 72 bp | CCTCTCCAGGCCCAGCGCCGGGAGCTTCAAAGTGGTTaGGGAGATCATGCGATGTACAGGCTTTCTGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: PLQAQRRELQSG*GDHAMYRLSGL Trigger: CAGCCCAGAAAGCCTGTACATCGCATGATCTCCCAAACCACTTTGAAGCTCCCGGCGCTGGGCCTGGAGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | ACTCTGCCCTATCTTCCCAGGCACTCCTTAGAATGCTCCGTGAGAGGAGAGCGACTGCTCTCCCAAGGCTaGGGCACCCTCTCCTCGAAC | + |
|
Preference number: 4 (lower is better) Translates to: TLPYLPRHSLECSVRGERLLSQG*GTLSSN Trigger: GTTCGAGGAGAGGGTGCCCCAGCCTTGGGAGAGCAG...TCGCTCTCCTCTCACGGAGCATTCTAAGGAGTGCCTGGGAAGATAGGGCAGAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | TCACCCAGTGCTAGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATCGGCCCTCTCTGAGCTaGTCTCCCAAGGCTGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: SPSARSRLSHVTKSSHWHRPSLS*SPKAGA Trigger: TGCCCCAGCCTTGGGAGAGCAGCTCAGAGAGGGCCG...ATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCTAGCACTGGGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | GCACAAGAGTTTCTCCCATGTAATATGCCTATGAATGGAGTTGCCAGGCCTGTCTGCTTGCGCTCGGCCTaGTGGAGCCGCCGGGAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: AQEFLPCNMPMNGVARPVCLRSA*WSRRER Trigger: TCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCA...GACAGGCCTGGCAACTCCATTCATAGGCATATTACATGGGAGAAACTCTTGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR TCA 90 bp | GCTGTGGAAAGTGATCCTTTTTCCTGGCCCAGATGGAGTGTAAGGAGGAGGATCCCAGGACTCCGTCACTaGAGTCCCGGGAGAGGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: AVESDPFSWPRWSVRRRIPGLRH*SPGRGF Trigger: GAAACCTCTCCCGGGACTTCAGTGACGGAGTCCTGG...GATCCTCCTCCTTACACTCCATCTGGGCCAGGAAAAAGGATCACTTTCCACAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR TCA 90 bp | CACCCAGTGCTAGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATTCCAGGACTCCGTCACTaGAGTCCCGGGAGAGGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: HPVLEAGCHTSQNLPTGIPGLRH*SPGRGF Trigger: GAAACCTCTCCCGGGACTTCAGTGACGGAGTCCTGG...AATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCTAGCACTGGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | CATGTGGGTGCTGGGCATGGAACCTGTGTCCTCTGTAAGAACAGCAAATGCTCTCGCTCCTCCAGGCGCTaGCTCAGTGGAATGAGCACT | + |
|
Preference number: 4 (lower is better) Translates to: HVGAGHGTCVLCKNSKCSRSSRR*LSGMST Trigger: AGTGCTCATTCCACTGAGGCAGCGCCTGGAGGAGCG...AGAGCATTTGCTGTTCTTACAGAGGACACAGGTTCCATGCCCAGCACCCACATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | CAGGCTTTCTGGGCTGTGGAAAGTGATCCTTTTTCCTGGCCCAGATGGAGTGTACAGAGGTACAGCTGGTaGAGAGCCTCCTCATCCACG | + |
|
Preference number: 4 (lower is better) Translates to: QAFWAVESDPFSWPRWSVQRYSW*RASSST Trigger: CGTGGATGAGGAGGCTCTGCACCAGCTGTACCTCTG...TACACTCCATCTGGGCCAGGAAAAAGGATCACTTTCCACAGCCCAGAAAGCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | CACCCAGTGCTAGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATTCAGAGGTACAGCTGGTaGAGAGCCTCCTCATCCACG | + |
|
Preference number: 4 (lower is better) Translates to: HPVLEAGCHTSQNLPTGIQRYSW*RASSST Trigger: CGTGGATGAGGAGGCTCTGCACCAGCTGTACCTCTG...AATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCTAGCACTGGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR TCA 90 bp | GAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATTATCATCAATGTAACGGACGGCCCTCTCTaGGCTGCTCTCCCAAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: EAGCHTSQNLPTGIIINVTDGPL*AALPRL Trigger: CAGCCTTGGGAGAGCAGCTCAGAGAGGGCCGTCCGT...TACATTGATGATAATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | AGCCGCCGGGAGAGATCATCGATGCGCACGTTCTTAAGTTGGAGCAGATGTTCCTATCCATGTAGCCACTaGTATCCTGAGGAGCCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SRRERSSMRTFLSWSRCSYPCSH*YPEEPA Trigger: AGCTGGCTCCTCAGGATAGCAGTGGCTACATGGATA...GGAACATCTGCTCCAACTTAAGAACGTGCGCATCGATGATCTCTCCCGGCGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGGGTGCTGGGCATGGAACCTGTGTCCTCTGTAAGAACAGCAAATGCTCTGAGGCCAACAGCTCCTaGTCCTTTTCAGCGATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: HVGAGHGTCVLCKNSKCSEANSS*SFSAIW Trigger: CCAGATCGCTGAAAAGGAGCAGGAGCTGTTGGCCTC...AGAGCATTTGCTGTTCTTACAGAGGACACAGGTTCCATGCCCAGCACCCACATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | CTCCCTTACTCCCGCCTACTTCAACACCTTATCCCTTCCTCTCCAGCTGCTGTGGGGAGAGGTTTCTCTTaGGTCTGGACAGAGGGATAT | + |
|
Preference number: 4 (lower is better) Translates to: LPYSRLLQHLIPSSPAAVGRGFS*VWTEGY Trigger: ATATCCCTCTGTCCAGACCCAAGAGAAACCTCTCCC...CACAGCAGCTGGAGAGGAAGGGATAAGGTGTTGAAGTAGGCGGGAGTAAGGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | GAGCCGCCGGGAGAGATCATCGATGCGCACGTTCTTAAGTTGGAGCAGATGTTCGGGAGAGGTTTCTCTTaGGTCTGGACAGAGGGATAT | + |
|
Preference number: 4 (lower is better) Translates to: EPPGEIIDAHVLKLEQMFGRGFS*VWTEGY Trigger: ATATCCCTCTGTCCAGACCCAAGAGAAACCTCTCCC...GAACATCTGCTCCAACTTAAGAACGTGCGCATCGATGATCTCTCCCGGCGGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR TCA 90 bp | AACTCACTGCCTTTGGGGATCCATACAGGCAGAAAGAGAAGGCAGGCACAGGAAACCTTTCTGTTCAGGTaGCCCCAGTTGCTGAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: NSLPLGIHTGRKRRQAQETFLFR*PQLLSF Trigger: GAAGCTCAGCAACTGGGGTCACCTGAACAGAAAGGT...TTCCTGTGCCTGCCTTCTCTTTCTGCCTGTATGGATCCCCAAAGGCAGTGAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | CAGGCTTTCTGGGCTGTGGAAAGTGATCCTTTTTCCTGGCCCAGATGGAGTGTATTGCTGAGCTTCTGCTaGAGAGAGTTGGCAGGGACA | + |
|
Preference number: 4 (lower is better) Translates to: QAFWAVESDPFSWPRWSVLLSFC*RELAGT Trigger: TGTCCCTGCCAACTCTCTCCAGCAGAAGCTCAGCAA...TACACTCCATCTGGGCCAGGAAAAAGGATCACTTTCCACAGCCCAGAAAGCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | GTGCTAGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATTATCATCCAGTTGCTGAGCTTCTaGTGGAGAGAGTTGGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: VLEAGCHTSQNLPTGIIIQLLSF*WRELAG Trigger: CCCTGCCAACTCTCTCCAGCAGAAGCTCAGCAACTG...GATGATAATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCTAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | CATGTGGGTGCTGGGCATGGAACCTGTGTCCTCTGTAAGAACAGCAAATGCTCTGGGAGAGGTTTCTCTTaGGTCTGGACAGAGGGATAT | + |
|
Preference number: 4 (lower is better) Translates to: HVGAGHGTCVLCKNSKCSGRGFS*VWTEGY Trigger: ATATCCCTCTGTCCAGACCCAAGAGAAACCTCTCCC...AGAGCATTTGCTGTTCTTACAGAGGACACAGGTTCCATGCCCAGCACCCACATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | CAGGCTTTCTGGGCTGTGGAAAGTGATCCTTTTTCCTGGCCCAGATGGAGTGTACGCACGTTCTTAAGTTaGAGCAGATGTTCCAGACGC | + |
|
Preference number: 4 (lower is better) Translates to: QAFWAVESDPFSWPRWSVRTFLS*SRCSRR Trigger: GCGTCTGGAACATCTGCTCCAACTTAAGAACGTGCG...TACACTCCATCTGGGCCAGGAAAAAGGATCACTTTCCACAGCCCAGAAAGCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | ACTCACTGCCTTTGGGGATCCATACAGGCAGAAAGAGAAGGCAGGCACAGGAAACGCACGTTCTTAAGTTaGAGCAGATGTTCCAGACGC | + |
|
Preference number: 4 (lower is better) Translates to: THCLWGSIQAEREGRHRKRTFLS*SRCSRR Trigger: GCGTCTGGAACATCTGCTCCAACTTAAGAACGTGCG...TTTCCTGTGCCTGCCTTCTCTTTCTGCCTGTATGGATCCCCAAAGGCAGTGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| 3UTR CAA 72 bp | GAAAGGGATAAAGGACAAGCCAGGAACTCACTGCCTTaGGGGATCCATACAGGCAGAAAGAGAAGGCAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: ERDKGQARNSLP*GIHTGRKRRQA Trigger: TGCCTGCCTTCTCTTTCTGCCTGTATGGATCCCCAAAGGCAGTGAGTTCCTGGCTTGTCCTTTATCCCTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR GCA 90 bp | TTCTGTATGATTGTTACAGTGTATCTCCCAGAACTCAGGGCACAAGAGTTTCTCCGCTCCTCCAGGCGCTaGCTCAGTGGAATGAGCACT | + |
|
Preference number: 4 (lower is better) Translates to: FCMIVTVYLPELRAQEFLRSSRR*LSGMST Trigger: AGTGCTCATTCCACTGAGGCAGCGCCTGGAGGAGCG...GAGAAACTCTTGTGCCCTGAGTTCTGGGAGATACACTGTAACAATCATACAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | TCACCCAGTGCTAGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATTCTGCTGGAGAGAGTTaGCAGGGACATAATTGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: SPSARSRLSHVTKSSHWHSAGES*QGHNCA Trigger: TGCACAATTATGTCCCTGCCAACTCTCTCCAGCAGA...ATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCTAGCACTGGGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | AACTCACTGCCTTTGGGGATCCATACAGGCAGAAAGAGAAGGCAGGCACAGGAATCTGCTGGAGAGAGTTaGCAGGGACATAATTGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: NSLPLGIHTGRKRRQAQESAGES*QGHNCA Trigger: TGCACAATTATGTCCCTGCCAACTCTCTCCAGCAGA...TTCCTGTGCCTGCCTTCTCTTTCTGCCTGTATGGATCCCCAAAGGCAGTGAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | GTGCTAGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATTATCATCTCCTTTTCAGCGATCTaGAGGACGAAGCTCGGATCA | + |
|
Preference number: 4 (lower is better) Translates to: VLEAGCHTSQNLPTGIIISFSAI*RTKLGS Trigger: TGATCCGAGCTTCGTCCTCCAGATCGCTGAAAAGGA...GATGATAATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCTAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CCA 90 bp | TTCTGTATGATTGTTACAGTGTATCTCCCAGAACTCAGGGCACAAGAGTTTCTCTCTCCTCGAACCTTCTaGGGCAAACCCATATCCATG | + |
|
Preference number: 4 (lower is better) Translates to: FCMIVTVYLPELRAQEFLSPRTF*GKPISM Trigger: CATGGATATGGGTTTGCCCCAGAAGGTTCGAGGAGA...GAGAAACTCTTGTGCCCTGAGTTCTGGGAGATACACTGTAACAATCATACAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS TCA 90 bp | CCTGGTTATACCCAGGGGGTCGGGAAGCCAACGGACGGCCCTCTCTaGGCTGCTCTCCCAAGGCTGGGGCACCCTCTCCTCGAACCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: PGYTQGVGKPTDGPL*AALPRLGHPLLEPS Trigger: AGAAGGTTCGAGGAGAGGGTGCCCCAGCCTTGGGAGAGCAGCTCAGAGAGGGCCGTCCGTTGGCTTCCCGACCCCCTGGGTATAACCAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS GCA 90 bp | GGAGCCAGCTCCTGTAAGGAGCCAACACCCAGCTTCTGGCGCCTCTaGCGCTCCTCCAGGCGCTGCCTCAGTGGAATGAGCACTAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GASSCKEPTPSFWRL*RSSRRCLSGMSTSS Trigger: GGAGCTAGTGCTCATTCCACTGAGGCAGCGCCTGGAGGAGCGGCAGAGGCGCCAGAAGCTGGGTGTTGGCTCCTTACAGGAGCTGGCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS GCA 90 bp | TCCTGCTCCTTTTCAGCGATCTGGAGGACGAAGCTCGGATCACCCTaGAGCGCCTGGTTATACCCAGGGGGTCGGGAAGCCAACGGACGG | + |
|
Preference number: 5 (lower is better) Translates to: SCSFSAIWRTKLGSP*SAWLYPGGREANGR Trigger: CCGTCCGTTGGCTTCCCGACCCCCTGGGTATAACCAGGCGCTGCAGGGTGATCCGAGCTTCGTCCTCCAGATCGCTGAAAAGGAGCAGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS CCA 90 bp | TTTTCAGCGATCTGGAGGACGAAGCTCGGATCACCCTGCAGCGCCTaGTTATACCCAGGGGGTCGGGAAGCCAACGGACGGCCCTCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: FSAIWRTKLGSPCSA*LYPGGREANGRPSL Trigger: CAGAGAGGGCCGTCCGTTGGCTTCCCGACCCCCTGGGTATAACCAGGCGCTGCAGGGTGATCCGAGCTTCGTCCTCCAGATCGCTGAAAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CAA 90 bp | GACAGAGGACCGCCTCTCCAGGCCCAGCGCCGGGAGCTTCAAAGTGGTTTGGGACGGGAGAGGTTTCTCTaGGGTCTGGACAGAGGGATA | + |
|
Preference number: 5 (lower is better) Translates to: DRGPPLQAQRRELQSGLGRERFL*GLDRGI Trigger: TATCCCTCTGTCCAGACCCAAGAGAAACCTCTCCCG...TCCCAAACCACTTTGAAGCTCCCGGCGCTGGGCCTGGAGAGGCGGTCCTCTGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS CCA 90 bp | ACAGCTCCTGCTCCTTTTCAGCGATCTGAGCTGCTCTCCCAAGGCTaGGGCACCCTCTCCTCGAACCTTCTGGGGCAAACCCATATCCAT | + |
|
Preference number: 5 (lower is better) Translates to: TAPAPFQRSELLSQG*GTLSSNLLGQTHIH Trigger: ATGGATATGGGTTTGCCCCAGAAGGTTCGAGGAGAGGGTGCCCCAGCCTTGGGAGAGCAGCTCAGATCGCTGAAAAGGAGCAGGAGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS GCA 90 bp | CCTCTCCTCGAACCTTCTGGGGCAAACCCATATCCATGTAGCCACTaGTATCCTGAGGAGCCAGCTCCTGTAAGGAGCCAACACCCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: PLLEPSGANPYPCSH*YPEEPAPVRSQHPA Trigger: AGCTGGGTGTTGGCTCCTTACAGGAGCTGGCTCCTCAGGATAGCAGTGGCTACATGGATATGGGTTTGCCCCAGAAGGTTCGAGGAGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS GCA 90 bp | TGCCTCAGTGGAATGAGCACTAGCTCCACTACTCCCGGAGAACACTaGGCAATCTTCCGCATCACATCGTCAGGGACCGAGAAGTTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: CLSGMSTSSTTPGEH*AIFRITSSGTEKFS Trigger: GCTGAACTTCTCGGTCCCTGACGATGTGATGCGGAAGATTGCGCAGTGTTCTCCGGGAGTAGTGGAGCTAGTGCTCATTCCACTGAGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS TCA 90 bp | TCAGGGACCGAGAAGTTCAGCTTGTTCAGCACCTTTCTGTTCAGGTaGCCCCAGTTGCTGAGCTTCTGCTGGAGAGAGTTGGCAGGGACA | + |
|
Preference number: 5 (lower is better) Translates to: SGTEKFSLFSTFLFR*PQLLSFCWRELAGT Trigger: TGTCCCTGCCAACTCTCTCCAGCAGAAGCTCAGCAACTGGGGTCACCTGAACAGAAAGGTGCTGAACAAGCTGAACTTCTCGGTCCCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR CAA 90 bp | ACTCTGCCCTATCTTCCCAGGCACTCCTTAGAATGCTCCGTGAGAGGAGAGCGACTGGACAGAGGGATATaGTCTACCCAGAGGTACAGC | + |
|
Preference number: 5 (lower is better) Translates to: TLPYLPRHSLECSVRGERLDRGI*STQRYS Trigger: GCTGTACCTCTGGGTAGACAATATCCCTCTGTCCAG...TCGCTCTCCTCTCACGGAGCATTCTAAGGAGTGCCTGGGAAGATAGGGCAGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS-3UTR CAA 90 bp | GAGCCGCCGGGAGAGATCATCGATGCGCACGTTCTTAAGTTGGAGCAGATGTTCCTGGACAGAGGGATATaGTCTACCCAGAGGTACAGC | + |
|
Preference number: 5 (lower is better) Translates to: EPPGEIIDAHVLKLEQMFLDRGI*STQRYS Trigger: GCTGTACCTCTGGGTAGACAATATCCCTCTGTCCAG...GAACATCTGCTCCAACTTAAGAACGTGCGCATCGATGATCTCTCCCGGCGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS-3UTR CAA 90 bp | GTGCTAGAAGCAGGCTGTCACACGTCACAAAATCTTCCCACTGGCATTATCATCCGGGAGAGGTTTCTCTaGGGTCTGGACAGAGGGATA | + |
|
Preference number: 5 (lower is better) Translates to: VLEAGCHTSQNLPTGIIIRERFL*GLDRGI Trigger: TATCCCTCTGTCCAGACCCAAGAGAAACCTCTCCCG...GATGATAATGCCAGTGGGAAGATTTTGTGACGTGTGACAGCCTGCTTCTAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS TCA 90 bp | AGTTCAGCTTGTTCAGCACCTTTCTGTTCAGGTGACCCCAGTTGCTaGGCTTCTGCTGGAGAGAGTTGGCAGGGACATAATTGTGCATCT | + |
|
Preference number: 5 (lower is better) Translates to: SSACSAPFCSGDPSC*ASAGESWQGHNCAS Trigger: AGATGCACAATTATGTCCCTGCCAACTCTCTCCAGCAGAAGCTCAGCAACTGGGGTCACCTGAACAGAAAGGTGCTGAACAAGCTGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS-3UTR CAA 90 bp | GCACAAGAGTTTCTCCCATGTAATATGCCTATGAATGGAGTTGCCAGGCCTGTCCTGGACAGAGGGATATaGTCTACCCAGAGGTACAGC | + |
|
Preference number: 5 (lower is better) Translates to: AQEFLPCNMPMNGVARPVLDRGI*STQRYS Trigger: GCTGTACCTCTGGGTAGACAATATCCCTCTGTCCAG...GACAGGCCTGGCAACTCCATTCATAGGCATATTACATGGGAGAAACTCTTGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS GCA 72 bp | GGGGGTCGGGAAGCCAACGGACGGCCCTCTCTGAGCTaGTCTCCCAAGGCTGGGGCACCCTCTCCTCGAACC | + |
|
Preference number: 6 (lower is better) Translates to: GGREANGRPSLS*SPKAGAPSPRT Trigger: GGTTCGAGGAGAGGGTGCCCCAGCCTTGGGAGAGCAGCTCAGAGAGGGCCGTCCGTTGGCTTCCCGACCCCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS CCA 72 bp | GGAGCCAGCTCCTGTAAGGAGCCAACACCCAGCTTCTaGCGCCTCTGCCGCTCCTCCAGGCGCTGCCTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: GASSCKEPTPSF*RLCRSSRRCLS Trigger: ACTGAGGCAGCGCCTGGAGGAGCGGCAGAGGCGCCAGAAGCTGGGTGTTGGCTCCTTACAGGAGCTGGCTCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS CCA 72 bp | CAACGGACGGCCCTCTCTGAGCTGCTCTCCCAAGGCTaGGGCACCCTCTCCTCGAACCTTCTGGGGCAAACC | + |
|
Preference number: 6 (lower is better) Translates to: QRTALSELLSQG*GTLSSNLLGQT Trigger: GGTTTGCCCCAGAAGGTTCGAGGAGAGGGTGCCCCAGCCTTGGGAGAGCAGCTCAGAGAGGGCCGTCCGTTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS CCA 72 bp | ATCTGGAGGACGAAGCTCGGATCACCCTGCAGCGCCTaGTTATACCCAGGGGGTCGGGAAGCCAACGGACGG | + |
|
Preference number: 6 (lower is better) Translates to: IWRTKLGSPCSA*LYPGGREANGR Trigger: CCGTCCGTTGGCTTCCCGACCCCCTGGGTATAACCAGGCGCTGCAGGGTGATCCGAGCTTCGTCCTCCAGAT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS GCA 72 bp | TTTTCAGCGATCTGGAGGACGAAGCTCGGATCACCCTaGAGCGCCTGGTTATACCCAGGGGGTCGGGAAGCC | + |
|
Preference number: 6 (lower is better) Translates to: FSAIWRTKLGSP*SAWLYPGGREA Trigger: GGCTTCCCGACCCCCTGGGTATAACCAGGCGCTGCAGGGTGATCCGAGCTTCGTCCTCCAGATCGCTGAAAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS CCA 72 bp | GCTCCTTTTCAGCGATCTGAGCTGCTCTCCCAAGGCTaGGGCACCCTCTCCTCGAACCTTCTGGGGCAAACC | + |
|
Preference number: 6 (lower is better) Translates to: APFQRSELLSQG*GTLSSNLLGQT Trigger: GGTTTGCCCCAGAAGGTTCGAGGAGAGGGTGCCCCAGCCTTGGGAGAGCAGCTCAGATCGCTGAAAAGGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127987.2 |
||
| CDS CAA 90 bp | CTGAAGTCCCGGGAGAGGTTTCTCTTGGGTCTGGACAGAGGGATATaGTCTACCCAGAGGTACAGCTGGTGCAGAGCCTCCTCATCCACG | + |
|
Preference number: 6 (lower is better) Translates to: LKSRERFLLGLDRGI*STQRYSWCRASSST Trigger: CGTGGATGAGGAGGCTCTGCACCAGCTGTACCTCTGGGTAGACAATATCCCTCTGTCCAGACCCAAGAGAAACCTCTCCCGGGACTTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS CAA 72 bp | CGGGAGAGGTTTCTCTTGGGTCTGGACAGAGGGATATaGTCTACCCAGAGGTACAGCTGGTGCAGAGCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: RERFLLGLDRGI*STQRYSWCRAS Trigger: GGAGGCTCTGCACCAGCTGTACCTCTGGGTAGACAATATCCCTCTGTCCAGACCCAAGAGAAACCTCTCCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS CAA 90 bp | TCTGCAACCAGGACTCCGTCACTGAAGTCCCGGGAGAGGTTTCTCTaGGGTCTGGACAGAGGGATATTGTCTACCCAGAGGTACAGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: SATRTPSLKSRERFL*GLDRGILSTQRYSW Trigger: CCAGCTGTACCTCTGGGTAGACAATATCCCTCTGTCCAGACCCAAGAGAAACCTCTCCCGGGACTTCAGTGACGGAGTCCTGGTTGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
||
| CDS CAA 90 bp | CTGCTGGAGCCGCCGGGAGAGATCATCGATGCGCACGTTCTTAAGTaGGAGCAGATGTTCCAGACGCTTCACCTTCATCTGAAGGACCTG | + |
|
Preference number: 6 (lower is better) Translates to: LLEPPGEIIDAHVLK*EQMFQTLHLHLKDL Trigger: CAGGTCCTTCAGATGAAGGTGAAGCGTCTGGAACATCTGCTCCAACTTAAGAACGTGCGCATCGATGATCTCTCCCGGCGGCTCCAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS CAA 72 bp | CCGCCGGGAGAGATCATCGATGCGCACGTTCTTAAGTaGGAGCAGATGTTCCAGACGCTTCACCTTCATCTG | + |
|
Preference number: 6 (lower is better) Translates to: PPGEIIDAHVLK*EQMFQTLHLHL Trigger: CAGATGAAGGTGAAGCGTCTGGAACATCTGCTCCAACTTAAGAACGTGCGCATCGATGATCTCTCCCGGCGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 |
||
| CDS GCA 72 bp | CTCCACCATCTTGGGGAAGTAAAACTTGATAAGCTCTaGAACCAGGACTCCGTCACTGAAGTCCCGGGAGAG | + |
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Preference number: 6 (lower is better) Translates to: LHHLGEVKLDKL*NQDSVTEVPGE Trigger: CTCTCCCGGGACTTCAGTGACGGAGTCCTGGTTGCAGAGCTTATCAAGTTTTACTTCCCCAAGATGGTGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
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| CDS TCA 72 bp | GAGAAGTTCAGCTTGTTCAGCACCTTTCTGTTCAGGTaGCCCCAGTTGCTGAGCTTCTGCTGGAGAGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: EKFSLFSTFLFR*PQLLSFCWREL Trigger: CAACTCTCTCCAGCAGAAGCTCAGCAACTGGGGTCACCTGAACAGAAAGGTGCTGAACAAGCTGAACTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028801.8 ENSMUST00000110218.9 ENSMUST00000127987.2 |
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