Pregenerated sensors for SPEER4F1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058643Ensembl transcript IDs: ENSMUST00000076099.4
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCTCCTCTTGGACACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTaGCAAGAGGCGTTGTCTGAAGAGAAAAGGGAACAACGCCCTAAA | + |
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Preference number: 1 (lower is better) Translates to: CSSWTLDSSAASSVL*QEALSEEKREQRPK Trigger: TTTAGGGCGTTGTTCCCTTTTCTCTTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTGTCCAAGAGGAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR-3UTR CCA 90 bp | TCATCTGAGGAAGATTGTGGGTGCTGGAGATGGTGCTCAGCAGGGGCCTCCTGGTCAGCAGGGGCCTCCTaGGGTGGCAACTGCTCAGCA | + |
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Preference number: 2 (lower is better) Translates to: SSEEDCGCWRWCSAGASWSAGAS*GGNCSA Trigger: TGCTGAGCAGTTGCCACCCCAGGAGGCCCCTGCTGA...CCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCAGATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR-3UTR GCA 90 bp | CTTGATAGCAGTGCAGCCAGCTCAGTTCTTTGCCAAGAGGCGTTGTCTGAAGAGGGGTGCTGGAGATGGTaGTCAGCAGGGGCCTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: LDSSAASSVLCQEALSEEGCWRW*SAGASW Trigger: CCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCC...CTCTTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR-3UTR CCA 90 bp | ACACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTGCCAAGAGGCGTTGTCTGAATGTGGGTGCTGGAGATaGTGCTCAGCAGGGGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: TLDSSAASSVLCQEALSECGCWR*CSAGAS Trigger: GGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACA...TTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR-3UTR GCA 90 bp | CACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTGCCAAGAGGCGTTGTCTGAAGGAGGAAGATTGTGGGTaGTGGAGATGGTGCTCAGCA | + |
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Preference number: 2 (lower is better) Translates to: HLIAVQPAQFFAKRRCLKEEDCG*WRWCSA Trigger: TGCTGAGCACCATCTCCAGCACCCACAATCTTCCTC...CTTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR-3UTR CCA 90 bp | CTTTGCCAAGAGGCGTTGTCTGAAGAGAAAAGGGAACAACGCCCTAAATCAGCCGAAGATTGTGGGTGCTaGAGATGGTGCTCAGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: LCQEALSEEKREQRPKSAEDCGC*RWCSAG Trigger: CCCTGCTGAGCACCATCTCCAGCACCCACAATCTTC...GGCTGATTTAGGGCGTTGTTCCCTTTTCTCTTCAGACAACGCCTCTTGGCAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR CAA 90 bp | ACACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTGCCAAGAGGCGTaGTCTGAAGAGAAAAGGGAACAACGCCCTAAATCAGCCATGGCT | + |
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Preference number: 2 (lower is better) Translates to: TLDSSAASSVLCQEA*SEEKREQRPKSAMA Trigger: AGCCATGGCTGATTTAGGGCGTTGTTCCCTTTTCTCTTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR-3UTR TCA 90 bp | CACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTGCCAAGAGGCGTTGTCTGAAGCCCACTCAGGACAAGTaGTATAAGAAGATTCATCTG | + |
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Preference number: 2 (lower is better) Translates to: HLIAVQPAQFFAKRRCLKPTQDK*YKKIHL Trigger: CAGATGAATCTTCTTATATCACTTGTCCTGAGTGGG...CTTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR-3UTR TCA 90 bp | AAAATTATTGTTCAGCTGCTTTCTCTTTCTGTACTTTTAGCAGCACAGACCTACCCAAGAGGCGTTGTCTaGAGAGAAAAGGGAACAACG | + |
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Preference number: 2 (lower is better) Translates to: KIIVQLLSLSVLLAAQTYPRGVV*REKGTT Trigger: CGTTGTTCCCTTTTCTCTTCAGACAACGCCTCTTGG...GTAGGTCTGTGCTGCTAAAAGTACAGAAAGAGAAAGCAGCTGAACAATAATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR-3UTR GCA 90 bp | AAAATTATTGTTCAGCTGCTTTCTCTTTCTGTACTTTTAGCAGCACAGACCTACGCCAGCTCAGTTCTTTaGCAAGAGGCGTTGTCTGAA | + |
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Preference number: 2 (lower is better) Translates to: KIIVQLLSLSVLLAAQTYASSVL*QEALSE Trigger: TTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGC...GTAGGTCTGTGCTGCTAAAAGTACAGAAAGAGAAAGCAGCTGAACAATAATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR CCA 72 bp | GAAGATTCATCTGAGGAAGATTGTGGGTGCTGGAGATaGTGCTCAGCAGGGGCCTCCTGGGGTGGCAACTCC | + |
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Preference number: 3 (lower is better) Translates to: EDSSEEDCGCWR*CSAGASWGGNS Trigger: GGAGTTGCCACCCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCAGATGAATCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR GCA 72 bp | TGGACACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTaGCAAGAGGCGTTGTCTGAAGAGAAAAGGGAACAA | + |
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Preference number: 3 (lower is better) Translates to: WTLDSSAASSVL*QEALSEEKREQ Trigger: TTGTTCCCTTTTCTCTTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTGTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR GCA 90 bp | CATCTGAGGAAGATTGTGGGTGCTGGAGATGGTGCTCAGCAGGGGCCTCCTGGGGAAGGCCAGCATCCATaGTCCCCTCTCTTGTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: HLRKIVGAGDGAQQGPPGEGQHP*SPLLSL Trigger: GAGAGACAAGAGAGGGGAGCATGGATGCTGGCCTTC...CCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCAGATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR TCA 90 bp | TCTGAGGAAGATTGTGGGTGCTGGAGATGGTGCTCAGCAGGGGCCTCCTGGGGTGACAGGTACAGGGGATaGTGTCTGTCTGTGAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: SEEDCGCWRWCSAGASWGDRYRG*CLSVSH Trigger: ATGGCTCACAGACAGACATCATCCCCTGTACCTGTC...ACCCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR TCA 90 bp | TCATCTGAGGAAGATTGTGGGTGCTGGAGATGGTGCTCAGCAGGGGCCTCCTGGGATGATGTCTGTCTGTaGGCCATCCACATTCGCCAA | + |
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Preference number: 4 (lower is better) Translates to: SSEEDCGCWRWCSAGASWDDVCL*AIHIRQ Trigger: TTGGCGAATGTGGATGGCTCACAGACAGACATCATC...CCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCAGATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR CCA 90 bp | CACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTGCCAAGAGGCGTTGTCTGAAGTCAGTAGGGGCCTCCTaGGGTGGCAACTCCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: HLIAVQPAQFFAKRRCLKSVGAS*GGNSSA Trigger: TGCTGAGGAGTTGCCACCCCAGGAGGCCCCTACTGA...CTTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR TCA 90 bp | ACACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTGCCAAGAGGCGTTGTCTGAAACGTCCAAATGCTGTTaGATGCTGGCCCATTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: TLDSSAASSVLCQEALSETSKCC*MLAHSA Trigger: GGCTGAATGGGCCAGCATTCAACAGCATTTGGACGT...TTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR CCA 90 bp | GAGGCGTTGTCTGAAGAGAAAAGGGAACAACGCCCTAAATCAGCCATGGCTTCCTGTCTTCTTGATCTGTaGCCAATCCCAGCTCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: EALSEEKREQRPKSAMASCLLDL*PIPALL Trigger: CAAGAGAGCTGGGATTGGCCACAGATCAAGAAGACA...GGAAGCCATGGCTGATTTAGGGCGTTGTTCCCTTTTCTCTTCAGACAACGCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| 3UTR CAA 72 bp | AGCAGTGCAGCCAGCTCAGTTCTTTGCCAAGAGGCGTaGTCTGAAGAGAAAAGGGAACAACGCCCTAAATCA | + |
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Preference number: 4 (lower is better) Translates to: SSAASSVLCQEA*SEEKREQRPKS Trigger: TGATTTAGGGCGTTGTTCCCTTTTCTCTTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR TCA 90 bp | AAGATTCATCTGAGGAAGATTGTGGGTGCTGGAGATGGTGCTCAGCAGGGGCCTTTTGATTTAGCCTCATaGTCTTGGATCCCAAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: KIHLRKIVGAGDGAQQGPFDLAS*SWIPRS Trigger: TGACCTTGGGATCCAAGATCATGAGGCTAAATCAAA...AGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCAGATGAATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR TCA 90 bp | CACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTGCCAAGAGGCGTTGTCTGAAGCGTGTTGCAATGTCATaGGCTCCTTCTGCTTTAACT | + |
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Preference number: 4 (lower is better) Translates to: HLIAVQPAQFFAKRRCLKRVAMS*APSALT Trigger: AGTTAAAGCAGAAGGAGCTCATGACATTGCAACACG...CTTCAGACAACGCCTCTTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR GCA 90 bp | CTTTGCCAAGAGGCGTTGTCTGAAGAGAAAAGGGAACAACGCCCTAAATCAGCCTCCTTGCTCTCCTGCTaGAATGTCATCAACTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LCQEALSEEKREQRPKSASLLSC*NVINFF Trigger: GAAGAAGTTGATGACATTGCAGCAGGAGAGCAAGGA...GGCTGATTTAGGGCGTTGTTCCCTTTTCTCTTCAGACAACGCCTCTTGGCAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR GCA 90 bp | TGCTGCTCCTCTTGGACACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTGCCAAGTCATGAGCTCCTTCTaGTTTAACTTCAGTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: CCSSWTLDSSAASSVLCQVMSSF*FNFSSS Trigger: TGAAGAACTGAAGTTAAAGCAGAAGGAGCTCATGAC...TTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTGTCCAAGAGGAGCAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR CCA 90 bp | GAAAATTATTGTTCAGCTGCTTTCTCTTTCTGTACTTTTAGCAGCACAGACCTATCAGCAGGGGCCTCCTaGGGTGGCAACTCATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: ENYCSAAFSFCTFSSTDLSAGAS*GGNSFC Trigger: GCAGAATGAGTTGCCACCCCAGGAGGCCCCTGCTGA...TAGGTCTGTGCTGCTAAAAGTACAGAAAGAGAAAGCAGCTGAACAATAATTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR TCA 90 bp | AAAATTATTGTTCAGCTGCTTTCTCTTTCTGTACTTTTAGCAGCACAGACCTACCTCTCCCATCCACATTaGCTCTCTGAAAAAGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: KIIVQLLSLSVLLAAQTYLSHPH*LSEKVS Trigger: GGAGACTTTTTCAGAGAGTCAATGTGGATGGGAGAG...GTAGGTCTGTGCTGCTAAAAGTACAGAAAGAGAAAGCAGCTGAACAATAATTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR GCA 90 bp | AAAATTATTGTTCAGCTGCTTTCTCTTTCTGTACTTTTAGCAGCACAGACCTACACTCATTCTGCAGGATaGTGTCTTCTTGATCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: KIIVQLLSLSVLLAAQTYTHSAG*CLLDLW Trigger: CCACAGATCAAGAAGACAGCATCCTGCAGAATGAGT...GTAGGTCTGTGCTGCTAAAAGTACAGAAAGAGAAAGCAGCTGAACAATAATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS GCA 90 bp | ACTCCTCAGCAGGGGCCTCCTGGGGTGGCAACTCATTCTGCAGGATaGTGTCTTCTTGATCTGTGGCCAATCCCAGCTCTCTTGCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: TPQQGPPGVATHSAG*CLLDLWPIPALLQF Trigger: AAACTGCAAGAGAGCTGGGATTGGCCACAGATCAAGAAGACAGCATCCTGCAGAATGAGTTGCCACCCCAGGAGGCCCCTGCTGAGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS CCA 90 bp | CCTGGGGTGGCAACTCATTCTGCAGGATGCTGTCTTCTTGATCTGTaGCCAATCCCAGCTCTCTTGCAGTTTCTGAGACCTGATGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: PGVATHSAGCCLLDL*PIPALLQFLRPDVP Trigger: AGGAACATCAGGTCTCAGAAACTGCAAGAGAGCTGGGATTGGCCACAGATCAAGAAGACAGCATCCTGCAGAATGAGTTGCCACCCCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS TCA 90 bp | TTCTCCTGTTCGTCTTTACCACTCAGGTTCACGTCCAAATGCTGTTaGATGCTGGCCCATTCAGCCTGTACTTCCTTGCTCTCCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: FSCSSLPLRFTSKCC*MLAHSACTSLLSCC Trigger: GCAGCAGGAGAGCAAGGAAGTACAGGCTGAATGGGCCAGCATTCAACAGCATTTGGACGTGAACCTGAGTGGTAAAGACGAACAGGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS GCA 90 bp | CCTGTTCGTCTTTACCACTCAGGTTCACGTCCAAATGCTGTTGAATaGTGGCCCATTCAGCCTGTACTTCCTTGCTCTCCTGCTGCAATG | + |
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Preference number: 5 (lower is better) Translates to: PVRLYHSGSRPNAVE*WPIQPVLPCSPAAM Trigger: CATTGCAGCAGGAGAGCAAGGAAGTACAGGCTGAATGGGCCAGCATTCAACAGCATTTGGACGTGAACCTGAGTGGTAAAGACGAACAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS TCA 90 bp | TTAGGGCCCGGCTGTGCAGGTTACTATAGAAATTTATCTCCTTCTTaGGCTCCTCATTTTCCTCTCGGGCCTCCATGGTTGCCATCTCTA | + |
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Preference number: 5 (lower is better) Translates to: LGPGCAGYYRNLSPS*APHFPLGPPWLPSL Trigger: TAGAGATGGCAACCATGGAGGCCCGAGAGGAAAATGAGGAGCTCAAGAAGGAGATAAATTTCTATAGTAACCTGCACAGCCGGGCCCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR CAA 90 bp | TGCTGCTCCTCTTGGACACTTGATAGCAGTGCAGCCAGCTCAGTTCTTTGCCAATTTAGCCTCATGATCTaGGATCCCAAGGTCAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: CCSSWTLDSSAASSVLCQFSLMI*DPKVKF Trigger: GAACTTGACCTTGGGATCCAAGATCATGAGGCTAAA...TTGGCAAAGAACTGAGCTGGCTGCACTGCTATCAAGTGTCCAAGAGGAGCAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS TCA 90 bp | CTCGGGCCTCCATGGTTGCCATCTCTAAGTCGTGTTGCAATGTCATaGGCTCCTTCTGCTTTAACTTCAGTTCTTCATAACTTTGATTTA | + |
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Preference number: 5 (lower is better) Translates to: LGPPWLPSLSRVAMS*APSALTSVLHNFDL Trigger: TAAATCAAAGTTATGAAGAACTGAAGTTAAAGCAGAAGGAGCTCATGACATTGCAACACGACTTAGAGATGGCAACCATGGAGGCCCGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS-3UTR CAA 90 bp | GAAAATTATTGTTCAGCTGCTTTCTCTTTCTGTACTTTTAGCAGCACAGACCTATTCTTCTTTATAAGATaGTTCTCCATTAGGGCCCGG | + |
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Preference number: 5 (lower is better) Translates to: ENYCSAAFSFCTFSSTDLFFFIR*FSIRAR Trigger: CCGGGCCCTAATGGAGAACAATCTTATAAAGAAGAA...TAGGTCTGTGCTGCTAAAAGTACAGAAAGAGAAAGCAGCTGAACAATAATTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS CAA 90 bp | CTTCTCCTGTTCGTCTTTACCACTCAGGTTCACGTCCAAATGCTGTaGAATGCTGGCCCATTCAGCCTGTACTTCCTTGCTCTCCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: LLLFVFTTQVHVQML*NAGPFSLYFLALLL Trigger: CAGCAGGAGAGCAAGGAAGTACAGGCTGAATGGGCCAGCATTCAACAGCATTTGGACGTGAACCTGAGTGGTAAAGACGAACAGGAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS TCA 72 bp | TGGGGTGGCAACTCATTCTGCAGGATGCTGTCTTCTTaGTCTGTGGCCAATCCCAGCTCTCTTGCAGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: WGGNSFCRMLSS*SVANPSSLAVS Trigger: AGAAACTGCAAGAGAGCTGGGATTGGCCACAGATCAAGAAGACAGCATCCTGCAGAATGAGTTGCCACCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS TCA 72 bp | TCAGCTCCTCCTCTTCCTTCTCAAACTGATTGCTTGTaGCAGGTACAGGGGATGATGTCTGTCTGTGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: SAPPLPSQTDCL*QVQGMMSVCEP Trigger: TGGCTCACAGACAGACATCATCCCCTGTACCTGTCACAAGCAATCAGTTTGAGAAGGAAGAGGAGGAGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS TCA 72 bp | TCGTCTTTACCACTCAGGTTCACGTCCAAATGCTGTTaGATGCTGGCCCATTCAGCCTGTACTTCCTTGCTC | + |
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Preference number: 6 (lower is better) Translates to: SSLPLRFTSKCC*MLAHSACTSLL Trigger: GAGCAAGGAAGTACAGGCTGAATGGGCCAGCATTCAACAGCATTTGGACGTGAACCTGAGTGGTAAAGACGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS CCA 72 bp | GCAACTCATTCTGCAGGATGCTGTCTTCTTGATCTGTaGCCAATCCCAGCTCTCTTGCAGTTTCTGAGACCT | + |
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Preference number: 6 (lower is better) Translates to: ATHSAGCCLLDL*PIPALLQFLRP Trigger: AGGTCTCAGAAACTGCAAGAGAGCTGGGATTGGCCACAGATCAAGAAGACAGCATCCTGCAGAATGAGTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS TCA 72 bp | CTTCTCAAACTGATTGCTTGTGACAGGTACAGGGGATaGTGTCTGTCTGTGAGCCATCCACATTCGCCAAGT | + |
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Preference number: 6 (lower is better) Translates to: LLKLIACDRYRG*CLSVSHPHSPS Trigger: ACTTGGCGAATGTGGATGGCTCACAGACAGACATCATCCCCTGTACCTGTCACAAGCAATCAGTTTGAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS TCA 72 bp | TTGATCTGTGGCCAATCCCAGCTCTCTTGCAGTTTCTaGGACCTGATGTTCCTGAGTGTCAAGGATGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: LICGQSQLSCSF*DLMFLSVKDAV Trigger: AACAGCATCCTTGACACTCAGGAACATCAGGTCTCAGAAACTGCAAGAGAGCTGGGATTGGCCACAGATCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS GCA 72 bp | CAGTTTCTGAGACCTGATGTTCCTGAGTGTCAAGGATaGTGTTCTTCTCCTGTTCGTCTTTACCACTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: QFLRPDVPECQG*CSSPVRLYHSG Trigger: ACCTGAGTGGTAAAGACGAACAGGAGAAGAACAGCATCCTTGACACTCAGGAACATCAGGTCTCAGAAACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS CAA 72 bp | TCCTGCTGCAATGTCATCAACTTCTTCTTTATAAGATaGTTCTCCATTAGGGCCCGGCTGTGCAGGTTACTA | + |
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Preference number: 6 (lower is better) Translates to: SCCNVINFFFIR*FSIRARLCRLL Trigger: TAGTAACCTGCACAGCCGGGCCCTAATGGAGAACAATCTTATAAAGAAGAAGTTGATGACATTGCAGCAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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| CDS TCA 72 bp | CCATGGTTGCCATCTCTAAGTCGTGTTGCAATGTCATaGGCTCCTTCTGCTTTAACTTCAGTTCTTCATAAC | + |
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Preference number: 6 (lower is better) Translates to: PWLPSLSRVAMS*APSALTSVLHN Trigger: GTTATGAAGAACTGAAGTTAAAGCAGAAGGAGCTCATGACATTGCAACACGACTTAGAGATGGCAACCATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076099.4 |
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