Pregenerated sensors for SPEER4E (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091255Ensembl transcript IDs: ENSMUST00000159973.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCTCCTCTTGGACACTAGGTATCAGTGCAGCCGCCTCAGTTCTCTaGCAAGAGACGTTGTCTGAAGAGAAAAGGGAACAACGCCCTGAA | + |
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Preference number: 1 (lower is better) Translates to: CSSWTLGISAAASVL*QETLSEEKREQRPE Trigger: TTCAGGGCGTTGTTCCCTTTTCTCTTCAGACAACGTCTCTTGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTCCAAGAGGAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR TCA 90 bp | AGTATGGCAGTGATTACATCATCAAGTGTGTGTCCATGGGGTAAGTaGCATTATCCACACACAAAAGATGATCATTGCCTTGTATACCTC | + |
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Preference number: 1 (lower is better) Translates to: SMAVITSSSVCPWGK*HYPHTKDDHCLVYL Trigger: GAGGTATACAAGGCAATGATCATCTTTTGTGTGTGGATAATGTCACTTACCCCATGGACACACACTTGATGATGTAATCACTGCCATACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR TCA 90 bp | GTTAGAAGTAAGAGAATTCATGACACCATGGATGCAGTATGGCAGTaGTTACATCATCAAGTGTGTGTCCATGGGGTAAGTGACATTATC | + |
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Preference number: 1 (lower is better) Translates to: VRSKRIHDTMDAVWQ*LHHQVCVHGVSDII Trigger: GATAATGTCACTTACCCCATGGACACACACTTGATGATGTAATCACTGCCATACTGCATCCATGGTGTCATGAATTCTCTTACTTCTAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR CCA 90 bp | GTTACAGAGTACTATATGTTAGAAGTAAGAGAATTCATGACACCATaGATGCAGTATGGCAGTGATTACATCATCAAGTGTGTGTCCATG | + |
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Preference number: 1 (lower is better) Translates to: VTEYYMLEVREFMTP*MQYGSDYIIKCVSM Trigger: CATGGACACACACTTGATGATGTAATCACTGCCATACTGCATCCATGGTGTCATGAATTCTCTTACTTCTAACATATAGTACTCTGTAAC 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR CAA 90 bp | CTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTaGGACACTAGGTATCAGTGCAGCCGCCTCAGTTCTCTGCCAAGA | + |
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Preference number: 2 (lower is better) Translates to: LSALLAAQPSSLLLL*DTRYQCSRLSSLPR Trigger: TCTTGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR-3UTR GCA 90 bp | GCTGCTTTCGCTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTGACACTAGGTATCAGTaGAGCCGCCTCAGTTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: AAFAFCTFSSTALQPAAPDTRYQ*SRLSSL Trigger: CAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTC...AGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAGCGAAAGCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR-3UTR TCA 90 bp | GCTGCTTTCGCTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCCAAGAGACGTTGTCTaGAGAGAAAAGGGAACAACG | + |
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Preference number: 2 (lower is better) Translates to: AAFAFCTFSSTALQPAAPPRDVV*REKGTT Trigger: CGTTGTTCCCTTTTCTCTTCAGACAACGTCTCTTGG...AGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAGCGAAAGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR CAA 90 bp | ACACTAGGTATCAGTGCAGCCGCCTCAGTTCTCTGCCAAGAGACGTaGTCTGAAGAGAAAAGGGAACAACGCCCTGAATCAGCCATGGCT | + |
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Preference number: 2 (lower is better) Translates to: TLGISAAASVLCQET*SEEKREQRPESAMA Trigger: AGCCATGGCTGATTCAGGGCGTTGTTCCCTTTTCTCTTCAGACAACGTCTCTTGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR-3UTR GCA 90 bp | TGGCTATGGCTTTACTATGTAGCCCTGGCTGCCTGGAACTTACAGAGATCCATCAAATTATTGTTCAGCTaGTTTCGCTTTCTGCACTTT | + |
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Preference number: 2 (lower is better) Translates to: WLWLYYVALAAWNLQRSIKLLFS*FRFLHF Trigger: AAAGTGCAGAAAGCGAAAGCAGCTGAACAATAATTT...GATGGATCTCTGTAAGTTCCAGGCAGCCAGGGCTACATAGTAAAGCCATAGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR CCA 72 bp | AGGTGGCTATGGCTTTACTATGTAGCCCTGGCTGCCTaGAACTTACAGAGATCCATCGCTGGCTGTGATTCT | + |
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Preference number: 3 (lower is better) Translates to: RWLWLYYVALAA*NLQRSIAGCDS Trigger: AGAATCACAGCCAGCGATGGATCTCTGTAAGTTCCAGGCAGCCAGGGCTACATAGTAAAGCCATAGCCACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR GCA 72 bp | TGGACACTAGGTATCAGTGCAGCCGCCTCAGTTCTCTaGCAAGAGACGTTGTCTGAAGAGAAAAGGGAACAA | + |
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Preference number: 3 (lower is better) Translates to: WTLGISAAASVL*QETLSEEKREQ Trigger: TTGTTCCCTTTTCTCTTCAGACAACGTCTCTTGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR GCA 72 bp | CTAAAGGAAAATTATTGTTCAGCTGCTTTCGCTTTCTaGACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: LKENYCSAAFAF*TFSSTALQPAA Trigger: AGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAGCGAAAGCAGCTGAACAATAATTTTCCTTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR-3UTR CAA 90 bp | ACCAAAACTCTAAAGGAAAATTATTGTTCAGCTGCTTTCGCTTTCTGCACTTTTCTCTGCCAAGAGACGTaGTCTGAAGAGAAAAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: TKTLKENYCSAAFAFCTFLCQET*SEEKRE Trigger: TTCCCTTTTCTCTTCAGACAACGTCTCTTGGCAGAG...AAAAGTGCAGAAAGCGAAAGCAGCTGAACAATAATTTTCCTTTAGAGTTTTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR TCA 72 bp | GACGGTATATTACTCAGTATCTGGTCCACAGGATCATaGATGGATGTGTGTTACAGAGTACTATATGTTAGA | + |
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Preference number: 3 (lower is better) Translates to: DGILLSIWSTGS*MDVCYRVLYVR Trigger: TCTAACATATAGTACTCTGTAACACACATCCATTCATGATCCTGTGGACCAGATACTGAGTAATATACCGTC 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR CCA 72 bp | TACTATATGTTAGAAGTAAGAGAATTCATGACACCATaGATGCAGTATGGCAGTGATTACATCATCAAGTGT | + |
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Preference number: 3 (lower is better) Translates to: YYMLEVREFMTP*MQYGSDYIIKC Trigger: ACACTTGATGATGTAATCACTGCCATACTGCATCCATGGTGTCATGAATTCTCTTACTTCTAACATATAGTA 36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR GCA 90 bp | GCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTAGGTATCAGTGCAGCCGCGGGTGCTGGAGATGGTaGTCAGCAGGGGCCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: AQPSSLLLLLDTRYQCSRGCWRW*SAGASW Trigger: CCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCC...GCGGCTGCACTGATACCTAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR TCA 90 bp | GCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTAGGTATCAGTGCAGCCGCGGGATGATGTCTGTCTaGGAGCCATCCACATTCGCC | + |
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Preference number: 4 (lower is better) Translates to: AQPSSLLLLLDTRYQCSRGMMSV*EPSTFA Trigger: GGCGAATGTGGATGGCTCTCAGACAGACATCATCCC...GCGGCTGCACTGATACCTAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR TCA 90 bp | CTGCTGCTCCTCTTGGACACTAGGTATCAGTGCAGCCGCCTCAGTTCTCTGCCAGCAGCTTCTGAGACCTaGTATTCTGGAGTCTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: LLLLLDTRYQCSRLSSLPAASET*YSGVSR Trigger: TCTTGAGACTCCAGAATATCAGGTCTCAGAAGCTGC...TGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTCCAAGAGGAGCAGCAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR GCA 90 bp | GCTGCTTTCGCTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTCTCTGAAAAAGTCTaGAGAGTCGGGCAAACAAGG | + |
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Preference number: 4 (lower is better) Translates to: AAFAFCTFSSTALQPAAPLSEKV*RVGQTR Trigger: CCTTGTTTGCCCGACTCTGCAGACTTTTTCAGAGAG...AGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAGCGAAAGCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR CCA 90 bp | CTGCTGCTCCTCTTGGACACTAGGTATCAGTGCAGCCGCCTCAGTTCTCTGCCACACTCCCATCCACATTaGCTCTCTGAAAAAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: LLLLLDTRYQCSRLSSLPHSHPH*LSEKVC Trigger: GCAGACTTTTTCAGAGAGCCAATGTGGATGGGAGTG...TGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTCCAAGAGGAGCAGCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR CCA 90 bp | CTGCTGCTCCTCTTGGACACTAGGTATCAGTGCAGCCGCCTCAGTTCTCTGCCATTCATTCCTCTCAGATaGAAGGTCAGCATCCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LLLLLDTRYQCSRLSSLPFIPLR*KVSILP Trigger: AGGAAGGATGCTGACCTTCCATCTGAGAGGAATGAA...TGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTCCAAGAGGAGCAGCAG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR TCA 90 bp | CCGCCTCAGTTCTCTGCCAAGAGACGTTGTCTGAAGAGAAAAGGGAACAACGCCAATGTGTCTCCTTCTTaGGCTCCTGCTTGGTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: PPQFSAKRRCLKRKGNNANVSPS*APAWSL Trigger: AAGAGACCAAGCAGGAGCTCAAGAAGGAGACACATT...GGCGTTGTTCCCTTTTCTCTTCAGACAACGTCTCTTGGCAGAGAACTGAGGCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR TCA 90 bp | CCGCCTCAGTTCTCTGCCAAGAGACGTTGTCTGAAGAGAAAAGGGAACAACGCCCTCTCTTGCAGCTTCTaGGACCTGATATTCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: PPQFSAKRRCLKRKGNNALSCSF*DLIFWS Trigger: ACTCCAGAATATCAGGTCTCAGAAGCTGCAAGAGAG...GGCGTTGTTCCCTTTTCTCTTCAGACAACGTCTCTTGGCAGAGAACTGAGGCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| 3UTR CAA 72 bp | ATCAGTGCAGCCGCCTCAGTTCTCTGCCAAGAGACGTaGTCTGAAGAGAAAAGGGAACAACGCCCTGAATCA | + |
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Preference number: 4 (lower is better) Translates to: ISAAASVLCQET*SEEKREQRPES Trigger: TGATTCAGGGCGTTGTTCCCTTTTCTCTTCAGACAACGTCTCTTGGCAGAGAACTGAGGCGGCTGCACTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR CCA 90 bp | AAAGGGAACAACGCCCTGAATCAGCCATGGCTTCCTTGTAAAGGCCTATTCACCCCTGCTTGGTCTCTTTaGCCTCCATGTTCTCCATCT | + |
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Preference number: 4 (lower is better) Translates to: KGNNALNQPWLPCKGLFTPAWSL*PPCSPS Trigger: AGATGGAGAACATGGAGGCCAAAGAGACCAAGCAGG...GGTGAATAGGCCTTTACAAGGAAGCCATGGCTGATTCAGGGCGTTGTTCCCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR GCA 90 bp | TCCTCTTGGACACTAGGTATCAGTGCAGCCGCCTCAGTTCTCTGCCAAGAGACGTCTTCCTTCTCAAACTaGTTCTTGCTTATGACAGGT | + |
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Preference number: 4 (lower is better) Translates to: SSWTLGISAAASVLCQETSSFSN*FLLMTG Trigger: ACCTGTCATAAGCAAGAAGCAGTTTGAGAAGGAAGA...CGTCTCTTGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTCCAAGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR GCA 90 bp | GAACACCTGAATAAGGAAGATGGTCTCAAGAGTCACTACTTGCAAATCAATTTTGAGGAAGATTGTGGGTaGTGGAGATGGTGCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: EHLNKEDGLKSHYLQINFEEDCG*WRWCSA Trigger: TGCTGAGCACCATCTCCAGCACCCACAATCTTCCTC...AAAATTGATTTGCAAGTAGTGACTCTTGAGACCATCTTCCTTATTCAGGTGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR GCA 90 bp | AACCAAAACTCTAAAGGAAAATTATTGTTCAGCTGCTTTCGCTTTCTGCACTTTACTCATTCTGCAGGATaGTGTCTTCTTCAGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: NQNSKGKLLFSCFRFLHFTHSAG*CLLQLW Trigger: CCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGT...AAAGTGCAGAAAGCGAAAGCAGCTGAACAATAATTTTCCTTTAGAGTTTTGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR GCA 90 bp | AACCAAAACTCTAAAGGAAAATTATTGTTCAGCTGCTTTCGCTTTCTGCACTTTCCTGGCAACTCATTCTaGAGGATGCTGTCTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: NQNSKGKLLFSCFRFLHFPGNSF*RMLSSS Trigger: TGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAGG...AAAGTGCAGAAAGCGAAAGCAGCTGAACAATAATTTTCCTTTAGAGTTTTGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS CCA 90 bp | CCACATTCGCCAAGTCCCCCTACTTCGTCCTTCATTCCTCTCAGATaGAAGGTCAGCATCCTTCCTCCCCTCTCTGGTATCACTCCCATC | + |
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Preference number: 5 (lower is better) Translates to: PHSPSPPTSSFIPLR*KVSILPPLSGITPI Trigger: GATGGGAGTGATACCAGAGAGGGGAGGAAGGATGCTGACCTTCCATCTGAGAGGAATGAAGGACGAAGTAGGGGGACTTGGCGAATGTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR CAA 90 bp | TCCTCTTGGACACTAGGTATCAGTGCAGCCGCCTCAGTTCTCTGCCAAGAGACGTCCTGCTTGGTCTCTTaGGCCTCCATGTTCTCCATC | + |
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Preference number: 5 (lower is better) Translates to: SSWTLGISAAASVLCQETSCLVS*ASMFSI Trigger: GATGGAGAACATGGAGGCCAAAGAGACCAAGCAGGA...CGTCTCTTGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTCCAAGAGGA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS CCA 90 bp | CCTGGCCTGGCAACTCATTCTGCAGGATGCTGTCTTCTTCAGCTGTaGCCAATCCCAGCTCTCTTGCAGCTTCTGAGACCTGATATTCTG | + |
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Preference number: 5 (lower is better) Translates to: PGLATHSAGCCLLQL*PIPALLQLLRPDIL Trigger: CAGAATATCAGGTCTCAGAAGCTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAGGCCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR CAA 90 bp | CCGCCTCAGTTCTCTGCCAAGAGACGTTGTCTGAAGAGAAAAGGGAACAACGCCTTCTTGAGCTCCTGCTaGGTCTCTTTGGCCTCCATG | + |
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Preference number: 5 (lower is better) Translates to: PPQFSAKRRCLKRKGNNAFLSSC*VSLASM Trigger: CATGGAGGCCAAAGAGACCAAGCAGGAGCTCAAGAA...GGCGTTGTTCCCTTTTCTCTTCAGACAACGTCTCTTGGCAGAGAACTGAGGCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS TCA 90 bp | TCAGGAGCCGGCTGTGCAGGTTACGATAGAAATGTGTCTCCTTCTTaGGCTCCTGCTTGGTCTCTTTGGCCTCCATGTTCTCCATCTCTA | + |
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Preference number: 5 (lower is better) Translates to: SGAGCAGYDRNVSPS*APAWSLWPPCSPSL Trigger: TAGAGATGGAGAACATGGAGGCCAAAGAGACCAAGCAGGAGCTCAAGAAGGAGACACATTTCTATCGTAACCTGCACAGCCGGCTCCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR CAA 90 bp | TGGCTATGGCTTTACTATGTAGCCCTGGCTGCCTGGAACTTACAGAGATCCATCTTCATCCGAGGAAGATaGTGGGTGCTGGAGATGGTG | + |
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Preference number: 5 (lower is better) Translates to: WLWLYYVALAAWNLQRSIFIRGR*WVLEMV Trigger: CACCATCTCCAGCACCCACAATCTTCCTCGGATGAA...GATGGATCTCTGTAAGTTCCAGGCAGCCAGGGCTACATAGTAAAGCCATAGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS TCA 90 bp | GCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTCTTGCAGCTTCTaGGACCTGATATTCTGGAGTCTCAAGATTGCTGTTCTCCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: AVFFSCGQSQLSCSF*DLIFWSLKIAVLLF Trigger: GAACAGGAGAACAGCAATCTTGAGACTCCAGAATATCAGGTCTCAGAAGCTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS TCA 90 bp | TCTTCAGCTGTGGCCAATCCCAGCTCTCTTGCAGCTTCTGAGACCTaGTATTCTGGAGTCTCAAGATTGCTGTTCTCCTGTTCGTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: SSAVANPSSLAASET*YSGVSRLLFSCSSF Trigger: AAAAGACGAACAGGAGAACAGCAATCTTGAGACTCCAGAATATCAGGTCTCAGAAGCTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR CAA 90 bp | GAGACAGAACACCTGAATAAGGAAGATGGTCTCAAGAGTCACTACTTGCAAATCTCTGGAGTCTCAAGATaGCTGTTCTCCTGTTCGTCT | + |
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Preference number: 5 (lower is better) Translates to: ETEHLNKEDGLKSHYLQISGVSR*LFSCSS Trigger: AGACGAACAGGAGAACAGCAATCTTGAGACTCCAGA...GATTTGCAAGTAGTGACTCTTGAGACCATCTTCCTTATTCAGGTGTTCTGTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS-3UTR CAA 90 bp | AACCAAAACTCTAAAGGAAAATTATTGTTCAGCTGCTTTCGCTTTCTGCACTTTAAATGTGTCTCCTTCTaGAGCTCCTGCTTGGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: NQNSKGKLLFSCFRFLHFKCVSF*SSCLVS Trigger: AGAGACCAAGCAGGAGCTCAAGAAGGAGACACATTT...AAAGTGCAGAAAGCGAAAGCAGCTGAACAATAATTTTCCTTTAGAGTTTTGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS GCA 72 bp | TGCTCAGCAGGGGCCTCCTGGCCTGGCAACTCATTCTaGAGGATGCTGTCTTCTTCAGCTGTGGCCAATCCC | + |
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Preference number: 6 (lower is better) Translates to: CSAGASWPGNSF*RMLSSSAVANP Trigger: GGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAGGCCAGGAGGCCCCTGCTGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS CCA 72 bp | GTGCTGGAGATGGTGCTCAGCAGGGGCCTCCTGGCCTaGCAACTCATTCTGCAGGATGCTGTCTTCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: VLEMVLSRGLLA*QLILQDAVFFS Trigger: GCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAGGCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS CCA 72 bp | GAAGATTCATCCGAGGAAGATTGTGGGTGCTGGAGATaGTGCTCAGCAGGGGCCTCCTGGCCTGGCAACTCA | + |
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Preference number: 6 (lower is better) Translates to: EDSSEEDCGCWR*CSAGASWPGNS Trigger: TGAGTTGCCAGGCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCGGATGAATCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS CCA 72 bp | CCTTCCTCCCCTCTCTGGTATCACTCCCATCCACATTaGCTCTCTGAAAAAGTCTGCAGAGTCGGGCAAACA | + |
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Preference number: 6 (lower is better) Translates to: PSSPLWYHSHPH*LSEKVCRVGQT Trigger: TGTTTGCCCGACTCTGCAGACTTTTTCAGAGAGCCAATGTGGATGGGAGTGATACCAGAGAGGGGAGGAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS CCA 72 bp | GCAACTCATTCTGCAGGATGCTGTCTTCTTCAGCTGTaGCCAATCCCAGCTCTCTTGCAGCTTCTGAGACCT | + |
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Preference number: 6 (lower is better) Translates to: ATHSAGCCLLQL*PIPALLQLLRP Trigger: AGGTCTCAGAAGCTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS TCA 72 bp | TTCCACTCAGGTTCAATTCCAACAAACATTGGTGAATaGTGGCCCAATCAGCCTGTACTTCCTTGCTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: FHSGSIPTNIGE*WPNQPVLPCSP Trigger: AGGAGAGCAAGGAAGTACAGGCTGATTGGGCCATCATTCACCAATGTTTGTTGGAATTGAACCTGAGTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS GCA 72 bp | CAGCTTCTGAGACCTGATATTCTGGAGTCTCAAGATTaGTGTTCTCCTGTTCGTCTTTTCCACTCAGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: QLLRPDILESQD*CSPVRLFHSGS Trigger: TGAACCTGAGTGGAAAAGACGAACAGGAGAACAGCAATCTTGAGACTCCAGAATATCAGGTCTCAGAAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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| CDS GCA 72 bp | ATGATGGCCCAATCAGCCTGTACTTCCTTGCTCTCCTaGTGCAATGTCATCAACTTCTTCTTTATAAGATTC | + |
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Preference number: 6 (lower is better) Translates to: MMAQSACTSLLS*CNVINFFFIRF Trigger: GAATCTTATAAAGAAGAAGTTGATGACATTGCAGCAGGAGAGCAAGGAAGTACAGGCTGATTGGGCCATCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159973.3 |
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