Pregenerated sensors for SPEER4D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070933Ensembl transcript IDs: ENSMUST00000095006.9, ENSMUST00000119100.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTTaGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTTGTC | + |
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Preference number: 1 (lower is better) Translates to: LLAAQPSSLLLLLDT*WQCSHLSTLPRVVV Trigger: GACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| 3UTR GCA 90 bp | TGCTCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTaGCAAGAGTTGTTGTCTGAAGAGAAAAGGGAACAATGCCCTGAA | + |
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Preference number: 1 (lower is better) Translates to: CSSWTLGGSAVTSVL*QELLSEEKREQCPE Trigger: TTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| 3UTR CAA 90 bp | ACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTaGGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTTGT | + |
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Preference number: 2 (lower is better) Translates to: TFSSTALQPAAPLGH*VAVQSPQYSAKSCC Trigger: ACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| 3UTR CAA 90 bp | TTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTaGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGA | + |
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Preference number: 2 (lower is better) Translates to: FSALLAAQPSSLLLL*DTWWQCSHLSTLPR Trigger: TCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| 3UTR-3UTR TCA 90 bp | TCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGAAGGGAACAATGCCCTaGATCAGCCATGGCTTCCTA | + |
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Preference number: 2 (lower is better) Translates to: SSWTLGGSAVTSVLCQELKGTMP*ISHGFL Trigger: TAGGAAGCCATGGCTGATTCAGGGCATTGTTCCCTT...CAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| 3UTR CAA 90 bp | ACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTaGTCTGAAGAGAAAAGGGAACAATGCCCTGAATCAGCCATGGCT | + |
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Preference number: 2 (lower is better) Translates to: TLGGSAVTSVLCQEL*SEEKREQCPESAMA Trigger: AGCCATGGCTGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| 3UTR CAA 90 bp | TGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTaGTTGTCTGAAGAGAAAAGGGAACAATGCCCTGAATCAGCCATG | + |
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Preference number: 2 (lower is better) Translates to: WTLGGSAVTSVLCQE*LSEEKREQCPESAM Trigger: CATGGCTGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| 3UTR-3UTR CCA 90 bp | GTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAGGGAACGCCCTGAATCAGCCATaGCTTCCTAGTAAAGGCCTA | + |
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Preference number: 2 (lower is better) Translates to: VQSPQYSAKSCCLKRKGNALNQP*LPSKGL Trigger: TAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGC...GTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| 3UTR CCA 72 bp | GCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTTaGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGA | + |
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Preference number: 3 (lower is better) Translates to: AQPSSLLLLLDT*WQCSHLSTLPR Trigger: TCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| 3UTR CCA 72 bp | CAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTTGGTaGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTT | + |
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Preference number: 3 (lower is better) Translates to: QPSSLLLLLDTW*QCSHLSTLPRV Trigger: AACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CCA 90 bp | CCTGCTGCTCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTGCCAGGGGCCTCCTGGCCTaGCAACTCATTCTGCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: PAAPLGHLVAVQSPQYSARGLLA*QLILQD Trigger: ATCCTGCAGAATGAGTTGCCAGGCCAGGAGGCCCCT...GGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR GCA 90 bp | TCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGAGGTGCTGGAGATGGTaGTCAGCAGGGGCCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: SSWTLGGSAVTSVLCQELRCWRW*SAGASW Trigger: CCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCT...CAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CCA 90 bp | TCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTCAGCAGGGGCCTCCTaGCCTGGCAACTCATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SSWTLGGSAVTSVLCQELSAGAS*PGNSFC Trigger: GCAGAATGAGTTGCCAGGCCAGGAGGCCCCTGCTGA...CAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CCA 90 bp | CCTGCTGCTCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTGCCTCCTGCTTGTTCTCTTaGGCCTCCATGTTCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: PAAPLGHLVAVQSPQYSASCLFS*ASMFSI Trigger: GATGGAGAACATGGAGGCCCAAGAGAACAAGCAGGA...GGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR GCA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGAAGGTGCTGGAGATGGTaGTCAGCAGGGGCCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: NNALNQPWLPSKGLFTLRRCWRW*SAGASW Trigger: CCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCT...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS-3UTR CCA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGATCAGCAGGGGCCTCCTaGCCTGGCAACTCATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: NNALNQPWLPSKGLFTLRSAGAS*PGNSFC Trigger: GCAGAATGAGTTGCCAGGCCAGGAGGCCCCTGCTGA...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS-3UTR CCA 90 bp | TCACCTCAGTACTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAGGGAACAATGCCTGTAGGTGCTGGAGATaGTGCTCAGCAGGGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SPQYSAKSCCLKRKGNNACRCWR*CSAGAS Trigger: GGAGGCCCCTGCTGAGCACCATCTCCAGCACCTACA...GGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CCA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGATGTAGGTGCTGGAGATaGTGCTCAGCAGGGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: NNALNQPWLPSKGLFTLRCRCWR*CSAGAS Trigger: GGAGGCCCCTGCTGAGCACCATCTCCAGCACCTACA...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS-3UTR GCA 90 bp | GGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAGGTCCTTCTTGAGCTCCTaGTTGTTCTCTTGGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: GSAVTSVLCQELLSEEKRSFLSS*LFSWAS Trigger: GGAGGCCCAAGAGAACAAGCAGGAGCTCAAGAAGGA...CCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR GCA 90 bp | GGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAGGGAGGATGATTGTAGGTaGTGGAGATGGTGCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GSAVTSVLCQELLSEEKREDDCR*WRWCSA Trigger: TGCTGAGCACCATCTCCAGCACCTACAATCATCCTC...CCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CCA 90 bp | GGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAGGTGTCTTCTTCAGCTGTaGCCAATCCCAGCTCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GSAVTSVLCQELLSEEKRCLLQL*PIPALL Trigger: CAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACA...CCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| 3UTR CAA 72 bp | GGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTaGTTGTCTGAAGAGAAAAGGGAACAATGCCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: GGSAVTSVLCQE*LSEEKREQCPE Trigger: TTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR TCA 90 bp | CAGCCTGCTGCTCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTTGTGTAGAAATGTCATaGTCTCCTTCTCCTTTAACT | + |
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Preference number: 4 (lower is better) Translates to: QPAAPLGHLVAVQSPQYSCVEMS*SPSPLT Trigger: AGTTAAAGGAGAAGGAGATCATGACATTTCTACACA...AGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR GCA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGATCCTTCTTGAGCTCCTaGTTGTTCTCTTGGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: NNALNQPWLPSKGLFTLRSFLSS*LFSWAS Trigger: GGAGGCCCAAGAGAACAAGCAGGAGCTCAAGAAGGA...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS-3UTR CCA 90 bp | TCACCTCAGTACTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAGGGAACAATGCCGATGATTGTAGGTGCTaGAGATGGTGCTCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: SPQYSAKSCCLKRKGNNADDCRC*RWCSAG Trigger: CCCTGCTGAGCACCATCTCCAGCACCTACAATCATC...GGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CCA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGAGATGATTGTAGGTGCTaGAGATGGTGCTCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: NNALNQPWLPSKGLFTLRDDCRC*RWCSAG Trigger: CCCTGCTGAGCACCATCTCCAGCACCTACAATCATC...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| 3UTR CAA 72 bp | GGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTaGTCTGAAGAGAAAAGGGAACAATGCCCTGAATCA | + |
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Preference number: 4 (lower is better) Translates to: GSAVTSVLCQEL*SEEKREQCPES Trigger: TGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR TCA 90 bp | GTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAACTGCTTCTTGCTTATaGCAGGTACAGGGGATGATG | + |
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Preference number: 4 (lower is better) Translates to: VAVQSPQYSAKSCCLKRKTASCL*QVQGMM Trigger: CATCATCCCCTGTACCTGTCATAAGCAAGAAGCAGT...TTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CCA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGATCCTGCTTGTTCTCTTaGGCCTCCATGTTCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: NNALNQPWLPSKGLFTLRSCLFS*ASMFSI Trigger: GATGGAGAACATGGAGGCCCAAGAGAACAAGCAGGA...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS-3UTR CCA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGATGTCTTCTTCAGCTGTaGCCAATCCCAGCTCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: NNALNQPWLPSKGLFTLRCLLQL*PIPALL Trigger: CAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACA...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS-3UTR TCA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGATGTGTAGAAATGTCATaGTCTCCTTCTCCTTTAACT | + |
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Preference number: 4 (lower is better) Translates to: NNALNQPWLPSKGLFTLRCVEMS*SPSPLT Trigger: AGTTAAAGGAGAAGGAGATCATGACATTTCTACACA...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS-3UTR CAA 90 bp | CAGCCTGCTGCTCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTCCAATCCCAGCTCTCTaGCAGTTTCTGAGACCTGAT | + |
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Preference number: 5 (lower is better) Translates to: QPAAPLGHLVAVQSPQYSPIPAL*QFLRPD Trigger: ATCAGGTCTCAGAAACTGCAAGAGAGCTGGGATTGG...AGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CAA 90 bp | CCTGCTGCTCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTGCCGTGAGCTGGATCTCTTaGATCAGCTTTTTCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: PAAPLGHLVAVQSPQYSAVSWIS*ISFFSS Trigger: GGAAGAGAAAAAGCTGATCAAAGAGATCCAGCTCAC...GGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CAA 90 bp | GGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAGGCTCCTGCTTGTTCTCTaGGGCCTCCATGTTCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: GSAVTSVLCQELLSEEKRLLLVL*GLHVLH Trigger: ATGGAGAACATGGAGGCCCAAGAGAACAAGCAGGAG...CCTTTTCTCTTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CAA 90 bp | ACACTTGGTGGCAGTGCAGTCACCTCAGTACTCTGCCAAGAGTTGTTGTCTGAATTCATAAAGGGGATTTaGCCTGTGGTAGGGCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: TLGGSAVTSVLCQELLSEFIKGI*PVVGPL Trigger: AAGAGGCCCTACCACAGGCAAAATCCCCTTTATGAA...TTCAGACAACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095006.9 |
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| CDS-3UTR CAA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGACTCCTGCTTGTTCTCTaGGGCCTCCATGTTCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: NNALNQPWLPSKGLFTLRLLLVL*GLHVLH Trigger: ATGGAGAACATGGAGGCCCAAGAGAACAAGCAGGAG...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS-3UTR CAA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGACCAATCCCAGCTCTCTaGCAGTTTCTGAGACCTGAT | + |
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Preference number: 5 (lower is better) Translates to: NNALNQPWLPSKGLFTLRPIPAL*QFLRPD Trigger: ATCAGGTCTCAGAAACTGCAAGAGAGCTGGGATTGG...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS-3UTR CAA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGATTCATAAAGGGGATTTaGCCTGTGGTAGGGCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: NNALNQPWLPSKGLFTLRFIKGI*PVVGPL Trigger: AAGAGGCCCTACCACAGGCAAAATCCCCTTTATGAA...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS-3UTR CAA 90 bp | AACAATGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGAAAATGTGTCTCCTTCTaGAGCTCCTGCTTGTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: NNALNQPWLPSKGLFTLRKCVSF*SSCLFS Trigger: AGAGAACAAGCAGGAGCTCAAGAAGGAGACACATTT...TCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS CCA 72 bp | GAAGATTCATCCGAGGATGATTGTAGGTGCTGGAGATaGTGCTCAGCAGGGGCCTCCTGGCCTGGCAACTCA | + |
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Preference number: 6 (lower is better) Translates to: EDSSEDDCRCWR*CSAGASWPGNS Trigger: TGAGTTGCCAGGCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCTACAATCATCCTCGGATGAATCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS GCA 72 bp | TATATGGAAGAAGATTCATCCGAGGATGATTGTAGGTaGTGGAGATGGTGCTCAGCAGGGGCCTCCTGGCCT | + |
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Preference number: 6 (lower is better) Translates to: YMEEDSSEDDCR*WRWCSAGASWP Trigger: AGGCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCTACAATCATCCTCGGATGAATCTTCTTCCATATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS CCA 72 bp | GCAACTCATTCTGCAGGATGCTGTCTTCTTCAGCTGTaGCCAATCCCAGCTCTCTTGCAGTTTCTGAGACCT | + |
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Preference number: 6 (lower is better) Translates to: ATHSAGCCLLQL*PIPALLQFLRP Trigger: AGGTCTCAGAAACTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS TCA 72 bp | GTGGCCAATCCCAGCTCTCTTGCAGTTTCTGAGACCTaGTATTCTGGAGTCTCAAGATTGCTGTTCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: VANPSSLAVSET*YSGVSRLLFSS Trigger: GGAGGAGAACAGCAATCTTGAGACTCCAGAATATCAGGTCTCAGAAACTGCAAGAGAGCTGGGATTGGCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS CAA 90 bp | TCTGCAGGATGCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTCTaGCAGTTTCTGAGACCTGATATTCTGGAGTCTCAAGATTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: SAGCCLLQLWPIPAL*QFLRPDILESQDCC Trigger: ACAGCAATCTTGAGACTCCAGAATATCAGGTCTCAGAAACTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS TCA 72 bp | TACCACTCAGGTTCAATTCCACCAAACATTGGTGAATaGTGGCCCAATCAGCCTGTACTTCCTTGCTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: YHSGSIPPNIGE*WPNQPVLPCSP Trigger: AGGAGAGCAAGGAAGTACAGGCTGATTGGGCCATCATTCACCAATGTTTGGTGGAATTGAACCTGAGTGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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| CDS CAA 90 bp | AGCTCCTGCTTGTTCTCTTGGGCCTCCATGTTCTCCATCTCTAAGTaGTGTAGAAATGTCATGATCTCCTTCTCCTTTAACTTCAATTTT | + |
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Preference number: 6 (lower is better) Translates to: SSCLFSWASMFSISK*CRNVMISFSFNFNF Trigger: AAAATTGAAGTTAAAGGAGAAGGAGATCATGACATTTCTACACAACTTAGAGATGGAGAACATGGAGGCCCAAGAGAACAAGCAGGAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095006.9 ENSMUST00000119100.2 |
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