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Pregenerated sensors for SPEER4C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073208

Ensembl transcript IDs: ENSMUST00000095005.12

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTTaGTGGCAGTGCAGTCACCTCAGTTCTCTGCCAAGAGTTGTTGTC +
Preference number: 1 (lower is better)
Translates to: LLAAQPSSLLLLLDT*WQCSHLSSLPRVVV
Trigger: GACAACAACTCTTGGCAGAGAACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR GCA 90 bp TGCTCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTTCTCTaGCAAGAGTTGTTGTCTGAAGAGAAAAGGGAACAATGCCCTGAA +
Preference number: 1 (lower is better)
Translates to: CSSWTLGGSAVTSVL*QELLSEEKREQCPE
Trigger: TTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGAACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR CAA 90 bp ACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTaGGTGGCAGTGCAGTCACCTCAGTTCTCTGCCAAGAGTTGTTGT +
Preference number: 2 (lower is better)
Translates to: TFSSTALQPAAPLGH*VAVQSPQFSAKSCC
Trigger: ACAACAACTCTTGGCAGAGAACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR CAA 90 bp TTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTaGGACACTTGGTGGCAGTGCAGTCACCTCAGTTCTCTGCCAAGA +
Preference number: 2 (lower is better)
Translates to: FSALLAAQPSSLLLL*DTWWQCSHLSSLPR
Trigger: TCTTGGCAGAGAACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR CAA 90 bp ACACTTGGTGGCAGTGCAGTCACCTCAGTTCTCTGCCAAGAGTTGTaGTCTGAAGAGAAAAGGGAACAATGCCCTGAATCAGCCATGGCT +
Preference number: 2 (lower is better)
Translates to: TLGGSAVTSVLCQEL*SEEKREQCPESAMA
Trigger: AGCCATGGCTGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGAACTGAGGTGACTGCACTGCCACCAAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR CAA 90 bp TGGACACTTGGTGGCAGTGCAGTCACCTCAGTTCTCTGCCAAGAGTaGTTGTCTGAAGAGAAAAGGGAACAATGCCCTGAATCAGCCATG +
Preference number: 2 (lower is better)
Translates to: WTLGGSAVTSVLCQE*LSEEKREQCPESAM
Trigger: CATGGCTGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGAACTGAGGTGACTGCACTGCCACCAAGTGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR-3UTR GCA 90 bp TTTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACGTCACCTCAGTTCTCTaGCAAGAGTTGTTGTCTGAA +
Preference number: 2 (lower is better)
Translates to: FFCTFSSTALQPAAPLGHVTSVL*QELLSE
Trigger: TTCAGACAACAACTCTTGGCAGAGAACTGAGGTGAC...GTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR CCA 72 bp GCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTTaGTGGCAGTGCAGTCACCTCAGTTCTCTGCCAAGA +
Preference number: 3 (lower is better)
Translates to: AQPSSLLLLLDT*WQCSHLSSLPR
Trigger: TCTTGGCAGAGAACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR CCA 72 bp CAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTTGGTaGCAGTGCAGTCACCTCAGTTCTCTGCCAAGAGTT +
Preference number: 3 (lower is better)
Translates to: QPSSLLLLLDTW*QCSHLSSLPRV
Trigger: AACTCTTGGCAGAGAACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR-3UTR CAA 90 bp TTTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACGTTCTCTGCCAAGAGTaGTTGTCTGAAGAGAAAAGG +
Preference number: 3 (lower is better)
Translates to: FFCTFSSTALQPAAPLGHVLCQE*LSEEKR
Trigger: CCTTTTCTCTTCAGACAACAACTCTTGGCAGAGAAC...GTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR CCA 72 bp CTGAAGAGAAAAGGGAACAATGCCCTGAATCAGCCATaGCTTCCTAGTAAAGGCCTATTCACCCTAAGAAAA +
Preference number: 3 (lower is better)
Translates to: LKRKGNNALNQP*LPSKGLFTLRK
Trigger: TTTTCTTAGGGTGAATAGGCCTTTACTAGGAAGCCATGGCTGATTCAGGGCATTGTTCCCTTTTCTCTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS-3UTR CCA 90 bp TTTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACGAAGATTGTGGGTGCTaGAGATGGTGCTCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: FFCTFSSTALQPAAPLGHEDCGC*RWCSAG
Trigger: CCCTGCTGAGCACCATCTCCAGCACCCACAATCTTC...GTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS-3UTR CCA 90 bp GTCACCTCAGTTCTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAGGGAACAATGCTGTGGGTGCTGGAGATaGTGCTCAGCAGGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: VTSVLCQELLSEEKREQCCGCWR*CSAGAS
Trigger: GGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACA...GCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGAACTGAGGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS-3UTR GCA 90 bp CAGCCTGCTGCTCCTCTTGGACACTTGGTGGCAGTGCAGTCACCTCAGTTCTCTTCCTTGCTCTCCTGCTaGAATGTCATAGACTTCTTC +
Preference number: 4 (lower is better)
Translates to: QPAAPLGHLVAVQSPQFSSLLSC*NVIDFF
Trigger: GAAGAAGTCTATGACATTGCAGCAGGAGAGCAAGGA...AGAGAACTGAGGTGACTGCACTGCCACCAAGTGTCCAAGAGGAGCAGCAGGCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS-3UTR CCA 90 bp GTGCAGTCACCTCAGTTCTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAGGGAACATCCGAGGAAGATTGTaGGTGCTGGAGATGGTGCTC +
Preference number: 4 (lower is better)
Translates to: VQSPQFSAKSCCLKRKGNIRGRL*VLEMVL
Trigger: GAGCACCATCTCCAGCACCCACAATCTTCCTCGGAT...GTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGAACTGAGGTGACTGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR CAA 72 bp GGTGGCAGTGCAGTCACCTCAGTTCTCTGCCAAGAGTaGTTGTCTGAAGAGAAAAGGGAACAATGCCCTGAA +
Preference number: 4 (lower is better)
Translates to: GGSAVTSVLCQE*LSEEKREQCPE
Trigger: TTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGAACTGAGGTGACTGCACTGCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS-3UTR GCA 90 bp TTGTTCAGCTTTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTCTCTGAAAAAGTCTaGAGAGTTGGGCAAACAAGG +
Preference number: 4 (lower is better)
Translates to: LFSFFCTFSSTALQPAAPLSEKV*RVGQTR
Trigger: CCTTGTTTGCCCAACTCTGCAGACTTTTTCAGAGAG...AGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAAAGCTGAACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
3UTR CAA 72 bp GGCAGTGCAGTCACCTCAGTTCTCTGCCAAGAGTTGTaGTCTGAAGAGAAAAGGGAACAATGCCCTGAATCA +
Preference number: 4 (lower is better)
Translates to: GSAVTSVLCQEL*SEEKREQCPES
Trigger: TGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGAACTGAGGTGACTGCACTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS-3UTR CCA 90 bp GTGCAGTCACCTCAGTTCTCTGCCAAGAGTTGTTGTCTGAAGAGAAAAGGGAACTTCATTACTCTCAGATaGAAGGTCAGCATCCTTCCT +
Preference number: 4 (lower is better)
Translates to: VQSPQFSAKSCCLKRKGNFITLR*KVSILP
Trigger: AGGAAGGATGCTGACCTTCCATCTGAGAGTAATGAA...GTTCCCTTTTCTCTTCAGACAACAACTCTTGGCAGAGAACTGAGGTGACTGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS GCA 90 bp TGGAGATGGTGCTCAGCAGGGGCCTCCTGGCCTGGCAACTCATTCTaGAGGATGCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTCTT +
Preference number: 5 (lower is better)
Translates to: WRWCSAGASWPGNSF*RMLSSSAVANPSSL
Trigger: AAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAGGCCAGGAGGCCCCTGCTGAGCACCATCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS CCA 90 bp AGATTGTGGGTGCTGGAGATGGTGCTCAGCAGGGGCCTCCTGGCCTaGCAACTCATTCTGCAGGATGCTGTCTTCTTCAGCTGTGGCCAA +
Preference number: 5 (lower is better)
Translates to: RLWVLEMVLSRGLLA*QLILQDAVFFSCGQ
Trigger: TTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAGGCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS GCA 90 bp ATGGAAGAAGATTCATCCGAGGAAGATTGTGGGTGCTGGAGATGGTaGTCAGCAGGGGCCTCCTGGCCTGGCAACTCATTCTGCAGGATG +
Preference number: 5 (lower is better)
Translates to: MEEDSSEEDCGCWRW*SAGASWPGNSFCRM
Trigger: CATCCTGCAGAATGAGTTGCCAGGCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCGGATGAATCTTCTTCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS CCA 90 bp TATATGGAAGAAGATTCATCCGAGGAAGATTGTGGGTGCTGGAGATaGTGCTCAGCAGGGGCCTCCTGGCCTGGCAACTCATTCTGCAGG +
Preference number: 5 (lower is better)
Translates to: YMEEDSSEEDCGCWR*CSAGASWPGNSFCR
Trigger: CCTGCAGAATGAGTTGCCAGGCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCGGATGAATCTTCTTCCATATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS CCA 90 bp CCTGGCCTGGCAACTCATTCTGCAGGATGCTGTCTTCTTCAGCTGTaGCCAATCCCAGCTCTCTTGCAGTTTCTGAGACCTGATATTCTG +
Preference number: 5 (lower is better)
Translates to: PGLATHSAGCCLLQL*PIPALLQFLRPDIL
Trigger: CAGAATATCAGGTCTCAGAAACTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAGGCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS TCA 90 bp TCAGGAGCCGGCTGTGCAGGTTACGATAGAAATGTGTCTCCTTCTTaGGCTCCTGCTTGTTCTCTTGGGCCTCCATGTTCTCCATCTCTA +
Preference number: 5 (lower is better)
Translates to: SGAGCAGYDRNVSPS*APACSLGPPCSPSL
Trigger: TAGAGATGGAGAACATGGAGGCCCAAGAGAACAAGCAGGAGCTCAAGAAGGAGACACATTTCTATCGTAACCTGCACAGCCGGCTCCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS TCA 90 bp TCTTCAGCTGTGGCCAATCCCAGCTCTCTTGCAGTTTCTGAGACCTaGTATTCTGGAGTCTCAAGATTGCTGTTCTCCTCCTGTTCGTCT +
Preference number: 5 (lower is better)
Translates to: SSAVANPSSLAVSET*YSGVSRLLFSSCSS
Trigger: AGACGAACAGGAGGAGAACAGCAATCTTGAGACTCCAGAATATCAGGTCTCAGAAACTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS TCA 72 bp TACCACTCAGGTTCAATTCCACCAAACGTTGGTGAATaGTGGCCCAATCAGCCTGTACTTCCTTGCTCTCCT +
Preference number: 6 (lower is better)
Translates to: YHSGSIPPNVGE*WPNQPVLPCSP
Trigger: AGGAGAGCAAGGAAGTACAGGCTGATTGGGCCATCATTCACCAACGTTTGGTGGAATTGAACCTGAGTGGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS CAA 72 bp TGCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTCTaGCAGTTTCTGAGACCTGATATTCTGGAGTCTCAA +
Preference number: 6 (lower is better)
Translates to: CCLLQLWPIPAL*QFLRPDILESQ
Trigger: TTGAGACTCCAGAATATCAGGTCTCAGAAACTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12
CDS GCA 72 bp ATGATGGCCCAATCAGCCTGTACTTCCTTGCTCTCCTaGTGCAATGTCATAGACTTCTTCTTTATAAGATTC +
Preference number: 6 (lower is better)
Translates to: MMAQSACTSLLS*CNVIDFFFIRF
Trigger: GAATCTTATAAAGAAGAAGTCTATGACATTGCAGCAGGAGAGCAAGGAAGTACAGGCTGATTGGGCCATCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095005.12