Pregenerated sensors for SPEER4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073119Ensembl transcript IDs: ENSMUST00000079447.4
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTCACAGAAAGTCATGTTTAGACATCCCTCCCTTTCAGGAGGGATaGCCCATGACCTTTCCCCAGTTAACGGCTCTGACCCTTTCAGGC | + |
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Preference number: 1 (lower is better) Translates to: AHRKSCLDIPPFQEG*PMTFPQLTALTLSG Trigger: GCCTGAAAGGGTCAGAGCCGTTAACTGGGGAAAGGTCATGGGTCATCCCTCCTGAAAGGGAGGGATGTCTAAACATGACTTTCTGTGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR CCA 90 bp | AACACAGAACTGCCAGTGGTAACTTCAGAGCCCTGCATACATGCCTaGCAGCATAGGACAATGAGTATGCGCAGGTCAGGCACTGTACCT | + |
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Preference number: 1 (lower is better) Translates to: NTELPVVTSEPCIHA*QHRTMSMRRSGTVP Trigger: AGGTACAGTGCCTGACCTGCGCATACTCATTGTCCTATGCTGCCAGGCATGTATGCAGGGCTCTGAAGTTACCACTGGCAGTTCTGTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 90 bp | CTTTCAGGCCAGAACCAAAGGGAAGCCATTGTTCTCCTCAATCACTaGTGGTCTATTGCAAGTAAACTGAGGCAGATGGCTCTGGCCTTC | + |
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Preference number: 1 (lower is better) Translates to: LSGQNQREAIVLLNH*WSIASKLRQMALAF Trigger: GAAGGCCAGAGCCATCTGCCTCAGTTTACTTGCAATAGACCATCAGTGATTGAGGAGAACAATGGCTTCCCTTTGGTTCTGGCCTGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 90 bp | CACTGTACCTACACATCTCCTGAGATTTCTCCACTCAACTGGACTTaGTCCTGGCCATCTAAACAGCACATTCTCTGGAAGGACAAAAGC | + |
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Preference number: 1 (lower is better) Translates to: HCTYTSPEISPLNWT*SWPSKQHILWKDKS Trigger: GCTTTTGTCCTTCCAGAGAATGTGCTGTTTAGATGGCCAGGATCAAGTCCAGTTGAGTGGAGAAATCTCAGGAGATGTGTAGGTACAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR GCA 90 bp | ATATCTGCTATGTGGTTAACACTTGATGAAGACCAGCTTCGAGAATaGCTTAAAGAAACAGATGGACTACCGCTCTGGTGGCAAGTAGCA | + |
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Preference number: 1 (lower is better) Translates to: ISAMWLTLDEDQLRE*LKETDGLPLWWQVA Trigger: TGCTACTTGCCACCAGAGCGGTAGTCCATCTGTTTCTTTAAGGCATTCTCGAAGCTGGTCTTCATCAAGTGTTAACCACATAGCAGATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 90 bp | TCTGAAGACCCAAGGACATCTTCTCTCAGGGTAAATATTAACTCTTaGCTAGGAACAAGGAAAAACTCTGGCTCACAGAAAGTCATGTTT | + |
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Preference number: 1 (lower is better) Translates to: SEDPRTSSLRVNINS*LGTRKNSGSQKVMF Trigger: AAACATGACTTTCTGTGAGCCAGAGTTTTTCCTTGTTCCTAGTCAAGAGTTAATATTTACCCTGAGAGAAGATGTCCTTGGGTCTTCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 90 bp | GTTACCAGTAATAGAATTCATGACACAATGGATGCAATATGGCAGTaGTTACATCATCAAGTGTGTTTCCATGGGGTAAGTAATATCATT | + |
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Preference number: 1 (lower is better) Translates to: VTSNRIHDTMDAIWQ*LHHQVCFHGVSNII Trigger: AATGATATTACTTACCCCATGGAAACACACTTGATGATGTAATCACTGCCATATTGCATCCATTGTGTCATGAATTCTATTACTGGTAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR CAA 90 bp | ACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTaGGTAGCAGTGCAGCCGCCTCAGTTCTCTACCAAGAGTCGTTGT | + |
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Preference number: 2 (lower is better) Translates to: TFSSTALQPAAPLGH*VAVQPPQFSTKSRC Trigger: ACAACGACTCTTGGTAGAGAACTGAGGCGGCTGCACTGCTACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR GCA 90 bp | CGCAGGTCAGGCACTGTACCTACACATCTCCTGAGATTTCTCCACTCAACTGGAAGCCCTCCAGCCTGCTaGTCCTCTTGGACACTTGGT | + |
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Preference number: 2 (lower is better) Translates to: RRSGTVPTHLLRFLHSTGSPPAC*SSWTLG Trigger: ACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCT...TCCAGTTGAGTGGAGAAATCTCAGGAGATGTGTAGGTACAGTGCCTGACCTGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR GCA 90 bp | ATGAGTATGCGCAGGTCAGGCACTGTACCTACACATCTCCTGAGATTTCTCCACCACAGCCCTCCAGCCTaGTGCTCCTCTTGGACACTT | + |
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Preference number: 2 (lower is better) Translates to: MSMRRSGTVPTHLLRFLHHSPPA*CSSWTL Trigger: AAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTG...GTGGAGAAATCTCAGGAGATGTGTAGGTACAGTGCCTGACCTGCGCATACTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR CAA 90 bp | ACACTTGGTAGCAGTGCAGCCGCCTCAGTTCTCTACCAAGAGTCGTaGTCTGAAGAGAAAAGGGAACAATGCCCTGAATCAGCCATGGCT | + |
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Preference number: 2 (lower is better) Translates to: TLGSSAAASVLYQES*SEEKREQCPESAMA Trigger: AGCCATGGCTGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACGACTCTTGGTAGAGAACTGAGGCGGCTGCACTGCTACCAAGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR GCA 90 bp | CACTCAACTGGACTTGATCCTGGCCATCTAAACAGCACATTCTCTGGAAGGACAGAGAAAAGGGAACAATaGCCTGAATCAGCCATGGCT | + |
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Preference number: 2 (lower is better) Translates to: HSTGLDPGHLNSTFSGRTEKREQ*PESAMA Trigger: AGCCATGGCTGATTCAGGGCATTGTTCCCTTTTCTC...TGTCCTTCCAGAGAATGTGCTGTTTAGATGGCCAGGATCAAGTCCAGTTGAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR GCA 90 bp | CCTTTCAGGCCAGAACCAAAGGGAAGCCATTGTTCTCCTCAATCACTGATGGTCGAGTGTTTTTATATCTaGAGCCGCTCTAGAACAATG | + |
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Preference number: 2 (lower is better) Translates to: PFRPEPKGSHCSPQSLMVECFYI*SRSRTM Trigger: CATTGTTCTAGAGCGGCTGCAGATATAAAAACACTC...GACCATCAGTGATTGAGGAGAACAATGGCTTCCCTTTGGTTCTGGCCTGAAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR CCA 90 bp | CGCAGGTCAGGCACTGTACCTACACATCTCCTGAGATTTCTCCACTCAACTGGAAACAAGGAAAAACTCTaGCTCACAGAAAGTCATGTT | + |
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Preference number: 2 (lower is better) Translates to: RRSGTVPTHLLRFLHSTGNKEKL*LTESHV Trigger: AACATGACTTTCTGTGAGCCAGAGTTTTTCCTTGTT...TCCAGTTGAGTGGAGAAATCTCAGGAGATGTGTAGGTACAGTGCCTGACCTGCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR TCA 90 bp | TTGATGAAGACCAGCTTCGAGAATGCCTTAAAGAAACAGATGGACTACCGCTCTCCAAGAGTCGTTGTCTaGAGAGAAAAGGGAACAATG | + |
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Preference number: 2 (lower is better) Translates to: LMKTSFENALKKQMDYRSPRVVV*REKGTM Trigger: CATTGTTCCCTTTTCTCTTCAGACAACGACTCTTGG...AGAGCGGTAGTCCATCTGTTTCTTTAAGGCATTCTCGAAGCTGGTCTTCATCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR TCA 90 bp | TCTAATCAGCAACAGCAAAAACACAGCAAGTTTATGGTCAAGGACAGCAGCATCATCCATCACTGGATGTaGGTTCTAGGTCTACAGCAG | + |
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Preference number: 2 (lower is better) Translates to: SNQQQQKHSKFMVKDSSIIHHWM*VLGLQQ Trigger: CTGCTGTAGACCTAGAACTCACATCCAGTGATGGAT...GATGCTGCTGTCCTTGACCATAAACTTGCTGTGTTTTTGCTGTTGCTGATTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR CCA 90 bp | ATGAGTATGCGCAGGTCAGGCACTGTACCTACACATCTCCTGAGATTTCTCCACGAATTCATGACACAATaGATGCAATATGGCAGTGAT | + |
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Preference number: 2 (lower is better) Translates to: MSMRRSGTVPTHLLRFLHEFMTQ*MQYGSD Trigger: ATCACTGCCATATTGCATCCATTGTGTCATGAATTC...GTGGAGAAATCTCAGGAGATGTGTAGGTACAGTGCCTGACCTGCGCATACTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR TCA 90 bp | TTGATGAAGACCAGCTTCGAGAATGCCTTAAAGAAACAGATGGACTACCGCTCTGAAGAAACTGTTATCTaGAGACCCAAGGACATCTTC | + |
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Preference number: 2 (lower is better) Translates to: LMKTSFENALKKQMDYRSEETVI*RPKDIF Trigger: GAAGATGTCCTTGGGTCTTCAGATAACAGTTTCTTC...AGAGCGGTAGTCCATCTGTTTCTTTAAGGCATTCTCGAAGCTGGTCTTCATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR CCA 90 bp | ACCTGCACACTTAGATCAGGAAAATGTACCTACATTACTCTATTTCCCATTTATTCTAGAAGACCCACATaGTGCCTAACAACCATCTCC | + |
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Preference number: 2 (lower is better) Translates to: TCTLRSGKCTYITLFPIYSRRPT*CLTTIS Trigger: GGAGATGGTTGTTAGGCACCATGTGGGTCTTCTAGA...ATAAATGGGAAATAGAGTAATGTAGGTACATTTTCCTGATCTAAGTGTGCAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR CCA 90 bp | TCTATCAAAAGCTATTTCCCAGCAAGCCATGGAAGGTCATTATATCTGCTATGTGCCGCTCTAGAACAATaGCTGTATATTACTCAGTAT | + |
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Preference number: 2 (lower is better) Translates to: SIKSYFPASHGRSLYLLCAALEQ*LYITQY Trigger: ATACTGAGTAATATACAGCCATTGTTCTAGAGCGGC...ACATAGCAGATATAATGACCTTCCATGGCTTGCTGGGAAATAGCTTTTGATAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR CCA 72 bp | CTGCCAGTGGTAACTTCAGAGCCCTGCATACATGCCTaGCAGCATAGGACAATGAGTATGCGCAGGTCAGGC | + |
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Preference number: 3 (lower is better) Translates to: LPVVTSEPCIHA*QHRTMSMRRSG Trigger: GCCTGACCTGCGCATACTCATTGTCCTATGCTGCCAGGCATGTATGCAGGGCTCTGAAGTTACCACTGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 72 bp | CAGAGCCCTGCATACATGCCTGGCAGCATAGGACAATaGGTATGCGCAGGTCAGGCACTGTACCTACACATC | + |
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Preference number: 3 (lower is better) Translates to: QSPAYMPGSIGQ*VCAGQALYLHI Trigger: GATGTGTAGGTACAGTGCCTGACCTGCGCATACTCATTGTCCTATGCTGCCAGGCATGTATGCAGGGCTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 72 bp | GTATGCGCAGGTCAGGCACTGTACCTACACATCTCCTaGGATTTCTCCACTCAACTGGACTTGATCCTGGCC | + |
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Preference number: 3 (lower is better) Translates to: VCAGQALYLHIS*DFSTQLDLILA Trigger: GGCCAGGATCAAGTCCAGTTGAGTGGAGAAATCTCAGGAGATGTGTAGGTACAGTGCCTGACCTGCGCATAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR CAA 90 bp | AGCACATTCTCTGGAAGGACAAAAGCCAACTGCAGGAGGTGTGGGGATGCCTCACATCTCCAGGAATGGTaGTGGTTCCTTCTTCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: STFSGRTKANCRRCGDASHLQEW*WFLLLS Trigger: GGACAGAAGAAGGAACCACAACCATTCCTGGAGATG...TGAGGCATCCCCACACCTCCTGCAGTTGGCTTTTGTCCTTCCAGAGAATGTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR GCA 72 bp | CTAAACAGCACATTCTCTGGAAGGACAAAAGCCAACTaGAGGAGGTGTGGGGATGCCTCACAGGTTAGAGCA | + |
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Preference number: 3 (lower is better) Translates to: LNSTFSGRTKAN*RRCGDASQVRA Trigger: TGCTCTAACCTGTGAGGCATCCCCACACCTCCTGCAGTTGGCTTTTGTCCTTCCAGAGAATGTGCTGTTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 72 bp | GGCTGCCTGGAACTTACAAAGATCCATCACTGGATGTaGGTTCTAGGTCTACAGCAGGGGATAGAACACCTG | + |
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Preference number: 3 (lower is better) Translates to: GCLELTKIHHWM*VLGLQQGIEHL Trigger: CAGGTGTTCTATCCCCTGCTGTAGACCTAGAACTCACATCCAGTGATGGATCTTTGTAAGTTCCAGGCAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR GCA 72 bp | CTAAACACAGAACTGCCAGTGGTAACTTCAGAGCCCTaGATACATGCCTGGCAGCATAGGACAATGAGTATG | + |
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Preference number: 3 (lower is better) Translates to: LNTELPVVTSEP*IHAWQHRTMSM Trigger: CATACTCATTGTCCTATGCTGCCAGGCATGTATGCAGGGCTCTGAAGTTACCACTGGCAGTTCTGTGTTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR CCA 72 bp | CACATGGTGCCTAACAACCATCTCCAGGAATGGTTGTaGTTCCTTCTTCTGTCCTCTGAGAGAAATGTCCCT | + |
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Preference number: 3 (lower is better) Translates to: HMVPNNHLQEWL*FLLLSSERNVP Trigger: AGGGACATTTCTCTCAGAGGACAGAAGAAGGAACCACAACCATTCCTGGAGATGGTTGTTAGGCACCATGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 72 bp | AGATTTCACCTGACTGCACCCGTGTTTAGGGACTCTTaGGGGAGCAGAAAACACAAACAGCAATCCACAACT | + |
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Preference number: 3 (lower is better) Translates to: RFHLTAPVFRDS*GSRKHKQQSTT Trigger: AGTTGTGGATTGCTGTTTGTGTTTTCTGCTCCCTCAAGAGTCCCTAAACACGGGTGCAGTCAGGTGAAATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 72 bp | CAGAACCAAAGGGAAGCCATTGTTCTCCTCAATCACTaGTGGTCTATTGCAAGTAAACTGAGGCAGATGGCT | + |
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Preference number: 3 (lower is better) Translates to: QNQREAIVLLNH*WSIASKLRQMA Trigger: AGCCATCTGCCTCAGTTTACTTGCAATAGACCATCAGTGATTGAGGAGAACAATGGCTTCCCTTTGGTTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 72 bp | TACACATCTCCTGAGATTTCTCCACTCAACTGGACTTaGTCCTGGCCATCTAAACAGCACATTCTCTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: YTSPEISPLNWT*SWPSKQHILWK Trigger: CTTCCAGAGAATGTGCTGTTTAGATGGCCAGGATCAAGTCCAGTTGAGTGGAGAAATCTCAGGAGATGTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR CCA 72 bp | CCCAGCAAGCCATGGAAGGTCATTATATCTGCTATGTaGTTAACACTTGATGAAGACCAGCTTCGAGAATGC | + |
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Preference number: 3 (lower is better) Translates to: PSKPWKVIISAM*LTLDEDQLREC Trigger: GCATTCTCGAAGCTGGTCTTCATCAAGTGTTAACCACATAGCAGATATAATGACCTTCCATGGCTTGCTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR CCA 72 bp | CTGAGTGTTTTTATATCTGCAGCCGCTCTAGAACAATaGCTGTATATTACTCAGTATCTGGTTCACGGGATC | + |
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Preference number: 3 (lower is better) Translates to: LSVFISAAALEQ*LYITQYLVHGI Trigger: GATCCCGTGAACCAGATACTGAGTAATATACAGCCATTGTTCTAGAGCGGCTGCAGATATAAAAACACTCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR CAA 90 bp | ACCTGCACACTTAGATCAGGAAAATGTACCTACATTACTCTATTTCCCATTTATCTATTCCTCCATCTTTaGTCCTCCATTCCCTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: TCTLRSGKCTYITLFPIYLFLHL*SSIPSL Trigger: GAGAGAGGGAATGGAGGACAAAAGATGGAGGAATAG...ATAAATGGGAAATAGAGTAATGTAGGTACATTTTCCTGATCTAAGTGTGCAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR CCA 72 bp | AGTCTAATCAGCAACAGCAAAAACACAGCAAGTTTATaGTCAAGGACAGCAGCATCTATCAAAAGCTATTTC | + |
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Preference number: 3 (lower is better) Translates to: SLISNSKNTASL*SRTAASIKSYF Trigger: GAAATAGCTTTTGATAGATGCTGCTGTCCTTGACCATAAACTTGCTGTGTTTTTGCTGTTGCTGATTAGACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 72 bp | AATAGAATTCATGACACAATGGATGCAATATGGCAGTaGTTACATCATCAAGTGTGTTTCCATGGGGTAAGT | + |
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Preference number: 3 (lower is better) Translates to: NRIHDTMDAIWQ*LHHQVCFHGVS Trigger: ACTTACCCCATGGAAACACACTTGATGATGTAATCACTGCCATATTGCATCCATTGTGTCATGAATTCTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR-3UTR CAA 90 bp | ACCTGCACACTTAGATCAGGAAAATGTACCTACATTACTCTATTTCCCATTTATCTCAAGAGTCACTACTaGCAAATCAATTTTTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: TCTLRSGKCTYITLFPIYLKSHY*QINFSA Trigger: TGCAGAAAAATTGATTTGCAAGTAGTGACTCTTGAG...ATAAATGGGAAATAGAGTAATGTAGGTACATTTTCCTGATCTAAGTGTGCAGGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR TCA 72 bp | GTATATTACTCAGTATCTGGTTCACGGGATCATGAATaGATGTGTGTTATAGAGTGCTATATGTTACCAGTA | + |
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Preference number: 3 (lower is better) Translates to: VYYSVSGSRDHE*MCVIECYMLPV Trigger: TACTGGTAACATATAGCACTCTATAACACACATTCATTCATGATCCCGTGAACCAGATACTGAGTAATATAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR GCA 90 bp | ATGAGTATGCGCAGGTCAGGCACTGTACCTACACATCTCCTGAGATTTCTCCACGGGTTCTGGGTATGGTaGTCAGCAGGGGCCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: MSMRRSGTVPTHLLRFLHGFWVW*SAGASW Trigger: CCAGGAGGCCCCTGCTGAGCACCATACCCAGAACCC...GTGGAGAAATCTCAGGAGATGTGTAGGTACAGTGCCTGACCTGCGCATACTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CCA 90 bp | CGCAGGTCAGGCACTGTACCTACACATCTCCTGAGATTTCTCCACTCAACTGGATCAGCAGGGGCCTCCTaGCATGGCAACTCATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: RRSGTVPTHLLRFLHSTGSAGAS*HGNSFC Trigger: GCAGAATGAGTTGCCATGCCAGGAGGCCCCTGCTGA...TCCAGTTGAGTGGAGAAATCTCAGGAGATGTGTAGGTACAGTGCCTGACCTGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR TCA 90 bp | AGCACATTCTCTGGAAGGACAAAAGCCAACTGCAGGAGGTGTGGGGATGCCTCATTCACATTGGCTCTCTaGAAGAGTCTGCAGAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: STFSGRTKANCRRCGDASFTLAL*KSLQSR Trigger: CCGACTCTGCAGACTCTTTCAGAGAGCCAATGTGAA...TGAGGCATCCCCACACCTCCTGCAGTTGGCTTTTGTCCTTCCAGAGAATGTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CCA 90 bp | GCAGCCGCCTCAGTTCTCTACCAAGAGTCGTTGTCTGAAGAGAAAAGGGAACAAGAAGATGGTGGGTTCTaGGTATGGTGCTCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: AAASVLYQESLSEEKREQEDGGF*VWCSAG Trigger: CCCTGCTGAGCACCATACCCAGAACCCACCATCTTC...TTGTTCCCTTTTCTCTTCAGACAACGACTCTTGGTAGAGAACTGAGGCGGCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CCA 90 bp | TCTAATCAGCAACAGCAAAAACACAGCAAGTTTATGGTCAAGGACAGCAGCATCGGTGGGTTCTGGGTATaGTGCTCAGCAGGGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SNQQQQKHSKFMVKDSSIGGFWV*CSAGAS Trigger: GGAGGCCCCTGCTGAGCACCATACCCAGAACCCACC...GATGCTGCTGTCCTTGACCATAAACTTGCTGTGTTTTTGCTGTTGCTGATTAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| 3UTR CAA 72 bp | AGCAGTGCAGCCGCCTCAGTTCTCTACCAAGAGTCGTaGTCTGAAGAGAAAAGGGAACAATGCCCTGAATCA | + |
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Preference number: 4 (lower is better) Translates to: SSAAASVLYQES*SEEKREQCPES Trigger: TGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACGACTCTTGGTAGAGAACTGAGGCGGCTGCACTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR TCA 90 bp | AGCACATTCTCTGGAAGGACAAAAGCCAACTGCAGGAGGTGTGGGGATGCCTCAATAAGAAGATTCATCTaGGGAAGATTCATCCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: STFSGRTKANCRRCGDASIRRFI*GRFIRG Trigger: TCCTCGGATGAATCTTCCTCAGATGAATCTTCTTAT...TGAGGCATCCCCACACCTCCTGCAGTTGGCTTTTGTCCTTCCAGAGAATGTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR GCA 90 bp | ATGAGTATGCGCAGGTCAGGCACTGTACCTACACATCTCCTGAGATTTCTCCACCAGCATGTATTTCCTTaGTCTCCTGCTGCAATATCG | + |
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Preference number: 4 (lower is better) Translates to: MSMRRSGTVPTHLLRFLHQHVFP*SPAAIS Trigger: CGATATTGCAGCAGGAGAGCAAGGAAATACATGCTG...GTGGAGAAATCTCAGGAGATGTGTAGGTACAGTGCCTGACCTGCGCATACTCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CCA 90 bp | ACTGGACTTGATCCTGGCCATCTAAACAGCACATTCTCTGGAAGGACAAAAGCCCTCTCCCATTCACATTaGCTCTCTGAAAGAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: TGLDPGHLNSTFSGRTKALSHSH*LSERVC Trigger: GCAGACTCTTTCAGAGAGCCAATGTGAATGGGAGAG...GGCTTTTGTCCTTCCAGAGAATGTGCTGTTTAGATGGCCAGGATCAAGTCCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CCA 90 bp | CAAGGAAAAACTCTGGCTCACAGAAAGTCATGTTTAGACATCCCTCCCTTTCAGATCCGAGGAAGATGGTaGGTTCTGGGTATGGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: QGKTLAHRKSCLDIPPFQIRGRW*VLGMVL Trigger: GAGCACCATACCCAGAACCCACCATCTTCCTCGGAT...CTGAAAGGGAGGGATGTCTAAACATGACTTTCTGTGAGCCAGAGTTTTTCCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR TCA 90 bp | CAAGGAAAAACTCTGGCTCACAGAAAGTCATGTTTAGACATCCCTCCCTTTCAGGATGTTGTCTGTCTGTaGGCCATCCACATTCGCCAA | + |
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Preference number: 4 (lower is better) Translates to: QGKTLAHRKSCLDIPPFQDVVCL*AIHIRQ Trigger: TTGGCGAATGTGGATGGCTCACAGACAGACAACATC...CTGAAAGGGAGGGATGTCTAAACATGACTTTCTGTGAGCCAGAGTTTTTCCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR TCA 90 bp | ACTGGACTTGATCCTGGCCATCTAAACAGCACATTCTCTGGAAGGACAAAAGCCCTCTCTTGCAGCTTCTaGGACCTGATTTTCTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: TGLDPGHLNSTFSGRTKALSCSF*DLIFLS Trigger: ACTCAAGAAAATCAGGTCTCAGAAGCTGCAAGAGAG...GGCTTTTGTCCTTCCAGAGAATGTGCTGTTTAGATGGCCAGGATCAAGTCCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CCA 90 bp | CCTTTCAGGCCAGAACCAAAGGGAAGCCATTGTTCTCCTCAATCACTGATGGTCTTCATTACTCTCAGGTaGAAGGTTAGCATCCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: PFRPEPKGSHCSPQSLMVFITLR*KVSILP Trigger: AGGAAGGATGCTAACCTTCCACCTGAGAGTAATGAA...GACCATCAGTGATTGAGGAGAACAATGGCTTCCCTTTGGTTCTGGCCTGAAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CCA 90 bp | TTCTCTACCAAGAGTCGTTGTCTGAAGAGAAAAGGGAACAATGCCCTGAATCAGTTCATCCGAGGAAGATaGTGGGTTCTGGGTATGGTG | + |
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Preference number: 4 (lower is better) Translates to: FSTKSRCLKRKGNNALNQFIRGR*WVLGMV Trigger: CACCATACCCAGAACCCACCATCTTCCTCGGATGAA...CTGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACAACGACTCTTGGTAGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR GCA 90 bp | TGCCTTAAAGAAACAGATGGACTACCGCTCTGGTGGCAAGTAGCAAAGCTTTACCCCACGCAGGACATGTaGTATAAGAAGATTCATCTG | + |
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Preference number: 4 (lower is better) Translates to: CLKETDGLPLWWQVAKLYPTQDM*YKKIHL Trigger: CAGATGAATCTTCTTATAGCACATGTCCTGCGTGGG...GTAAAGCTTTGCTACTTGCCACCAGAGCGGTAGTCCATCTGTTTCTTTAAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR TCA 90 bp | CAAGGAAAAACTCTGGCTCACAGAAAGTCATGTTTAGACATCCCTCCCTTTCAGACTGCTTTTTGCTTGTaGCAGGTACAGAGGATGTTG | + |
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Preference number: 4 (lower is better) Translates to: QGKTLAHRKSCLDIPPFQTAFCL*QVQRML Trigger: CAACATCCTCTGTACCTGTCACAAGCAAAAAGCAGT...CTGAAAGGGAGGGATGTCTAAACATGACTTTCTGTGAGCCAGAGTTTTTCCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS GCA 90 bp | TGGGTATGGTGCTCAGCAGGGGCCTCCTGGCATGGCAACTCATTCTaGAAGATGCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: WVWCSAGASWHGNSF*KMLSSSAVANPSSL Trigger: AAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCTTGCAGAATGAGTTGCCATGCCAGGAGGCCCCTGCTGAGCACCATACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS CCA 90 bp | CCACATTCGCCAAGTCCACCTCCTTCGTCCTTCATTACTCTCAGGTaGAAGGTTAGCATCCTTCCTCCCCTCTCTGGTCTCTCTCCCATT | + |
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Preference number: 5 (lower is better) Translates to: PHSPSPPPSSFITLR*KVSILPPLSGLSPI Trigger: AATGGGAGAGAGACCAGAGAGGGGAGGAAGGATGCTAACCTTCCACCTGAGAGTAATGAAGGACGAAGGAGGTGGACTTGGCGAATGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS TCA 90 bp | GCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTCTTGCAGCTTCTaGGACCTGATTTTCTTGAGTCTCCAGGTTGCTGGTCTTCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: AVFFSCGQSQLSCSF*DLIFLSLQVAGLLL Trigger: CAGGAGAAGACCAGCAACCTGGAGACTCAAGAAAATCAGGTCTCAGAAGCTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CAA 90 bp | ATGAGTATGCGCAGGTCAGGCACTGTACCTACACATCTCCTGAGATTTCTCCACTTCTTGAACTCCTGCTaGTTCTCTCGGGCCTCCATG | + |
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Preference number: 5 (lower is better) Translates to: MSMRRSGTVPTHLLRFLHFLNSC*FSRASM Trigger: CATGGAGGCCCGAGAGAACAAGCAGGAGTTCAAGAA...GTGGAGAAATCTCAGGAGATGTGTAGGTACAGTGCCTGACCTGCGCATACTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS CCA 90 bp | CCTGGCATGGCAACTCATTCTGCAAGATGCTGTCTTCTTCAGCTGTaGCCAATCCCAGCTCTCTTGCAGCTTCTGAGACCTGATTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: PGMATHSARCCLLQL*PIPALLQLLRPDFL Trigger: AAGAAAATCAGGTCTCAGAAGCTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCTTGCAGAATGAGTTGCCATGCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS TCA 90 bp | AACTGCTTTTTGCTTGTGACAGGTACAGAGGATGTTGTCTGTCTGTaGGCCATCCACATTCGCCAAGTCCACCTCCTTCGTCCTTCATTA | + |
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Preference number: 5 (lower is better) Translates to: NCFLLVTGTEDVVCL*AIHIRQVHLLRPSL Trigger: TAATGAAGGACGAAGGAGGTGGACTTGGCGAATGTGGATGGCTCACAGACAGACAACATCCTCTGTACCTGTCACAAGCAAAAAGCAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CAA 90 bp | GCAGCCGCCTCAGTTCTCTACCAAGAGTCGTTGTCTGAAGAGAAAAGGGAACAATTTATAATGTCGAGTTaGCCTGTGGTAGGGCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: AAASVLYQESLSEEKREQFIMSS*PVVGPL Trigger: AAGAGGCCCTACCACAGGCAAACTCGACATTATAAA...TTGTTCCCTTTTCTCTTCAGACAACGACTCTTGGTAGAGAACTGAGGCGGCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS GCA 90 bp | GCTCTCTTGCAGCTTCTGAGACCTGATTTTCTTGAGTCTCCAGGTTaGTGGTCTTCTCCTGTTCATCTTTACAACTCAGGTTCAACTCCA | + |
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Preference number: 5 (lower is better) Translates to: ALLQLLRPDFLESPG*WSSPVHLYNSGSTP Trigger: TGGAGTTGAACCTGAGTTGTAAAGATGAACAGGAGAAGACCAGCAACCTGGAGACTCAAGAAAATCAGGTCTCAGAAGCTGCAAGAGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CAA 90 bp | CATCTCCAGGAATGGTTGTGGTTCCTTCTTCTGTCCTCTGAGAGAAATGTCCCTTTCTCAAACTGCTTTTaGCTTGTGACAGGTACAGAG | + |
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Preference number: 5 (lower is better) Translates to: HLQEWLWFLLLSSERNVPFSNCF*LVTGTE Trigger: CTCTGTACCTGTCACAAGCAAAAAGCAGTTTGAGAA...AGGGACATTTCTCTCAGAGGACAGAAGAAGGAACCACAACCATTCCTGGAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS TCA 90 bp | GTTCATCTTTACAACTCAGGTTCAACTCCACCAAACGTTCTTGAATaGTGGCCCAATCAGCATGTATTTCCTTGCTCTCCTGCTGCAATA | + |
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Preference number: 5 (lower is better) Translates to: VHLYNSGSTPPNVLE*WPNQHVFPCSPAAI Trigger: TATTGCAGCAGGAGAGCAAGGAAATACATGCTGATTGGGCCATCATTCAAGAACGTTTGGTGGAGTTGAACCTGAGTTGTAAAGATGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CAA 90 bp | TCTATCAAAAGCTATTTCCCAGCAAGCCATGGAAGGTCATTATATCTGCTATGTCTCCACCAAACGTTCTaGAATGATGGCCCAATCAGC | + |
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Preference number: 5 (lower is better) Translates to: SIKSYFPASHGRSLYLLCLHQTF*NDGPIS Trigger: GCTGATTGGGCCATCATTCAAGAACGTTTGGTGGAG...ACATAGCAGATATAATGACCTTCCATGGCTTGCTGGGAAATAGCTTTTGATAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS-3UTR CAA 90 bp | ACCTGCACACTTAGATCAGGAAAATGTACCTACATTACTCTATTTCCCATTTATCCAATCCCAGCTCTCTaGCAGCTTCTGAGACCTGAT | + |
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Preference number: 5 (lower is better) Translates to: TCTLRSGKCTYITLFPIYPIPAL*QLLRPD Trigger: ATCAGGTCTCAGAAGCTGCAAGAGAGCTGGGATTGG...ATAAATGGGAAATAGAGTAATGTAGGTACATTTTCCTGATCTAAGTGTGCAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS GCA 72 bp | TGCTCAGCAGGGGCCTCCTGGCATGGCAACTCATTCTaGAAGATGCTGTCTTCTTCAGCTGTGGCCAATCCC | + |
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Preference number: 6 (lower is better) Translates to: CSAGASWHGNSF*KMLSSSAVANP Trigger: GGGATTGGCCACAGCTGAAGAAGACAGCATCTTGCAGAATGAGTTGCCATGCCAGGAGGCCCCTGCTGAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS CCA 72 bp | GGTGGGTTCTGGGTATGGTGCTCAGCAGGGGCCTCCTaGCATGGCAACTCATTCTGCAAGATGCTGTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: GGFWVWCSAGAS*HGNSFCKMLSS Trigger: AGAAGACAGCATCTTGCAGAATGAGTTGCCATGCCAGGAGGCCCCTGCTGAGCACCATACCCAGAACCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS CCA 72 bp | CCAAGTCCACCTCCTTCGTCCTTCATTACTCTCAGGTaGAAGGTTAGCATCCTTCCTCCCCTCTCTGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: PSPPPSSFITLR*KVSILPPLSGL Trigger: GAGACCAGAGAGGGGAGGAAGGATGCTAACCTTCCACCTGAGAGTAATGAAGGACGAAGGAGGTGGACTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS CAA 90 bp | TCTGCAAGATGCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTCTaGCAGCTTCTGAGACCTGATTTTCTTGAGTCTCCAGGTTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SARCCLLQLWPIPAL*QLLRPDFLESPGCW Trigger: CCAGCAACCTGGAGACTCAAGAAAATCAGGTCTCAGAAGCTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCTTGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS TCA 72 bp | TTGCTTGTGACAGGTACAGAGGATGTTGTCTGTCTGTaGGCCATCCACATTCGCCAAGTCCACCTCCTTCGT | + |
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Preference number: 6 (lower is better) Translates to: LLVTGTEDVVCL*AIHIRQVHLLR Trigger: ACGAAGGAGGTGGACTTGGCGAATGTGGATGGCTCACAGACAGACAACATCCTCTGTACCTGTCACAAGCAA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS CCA 72 bp | GCAACTCATTCTGCAAGATGCTGTCTTCTTCAGCTGTaGCCAATCCCAGCTCTCTTGCAGCTTCTGAGACCT | + |
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Preference number: 6 (lower is better) Translates to: ATHSARCCLLQL*PIPALLQLLRP Trigger: AGGTCTCAGAAGCTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCTTGCAGAATGAGTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS GCA 72 bp | CAGCTTCTGAGACCTGATTTTCTTGAGTCTCCAGGTTaGTGGTCTTCTCCTGTTCATCTTTACAACTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: QLLRPDFLESPG*WSSPVHLYNSG Trigger: ACCTGAGTTGTAAAGATGAACAGGAGAAGACCAGCAACCTGGAGACTCAAGAAAATCAGGTCTCAGAAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS CAA 90 bp | CGATCTCTCAGCTCATTTGTCTCCTTGGTAGTGAGCTGGATCTTTTaGATCAGCTCCTTCTCTTCCTTCTCAAACTGCTTTTTGCTTGTG | + |
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Preference number: 6 (lower is better) Translates to: RSLSSFVSLVVSWIF*ISSFSSFSNCFLLV Trigger: CACAAGCAAAAAGCAGTTTGAGAAGGAAGAGAAGGAGCTGATCAAAAAGATCCAGCTCACTACCAAGGAGACAAATGAGCTGAGAGATCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS CAA 72 bp | TTGATCAGCTCCTTCTCTTCCTTCTCAAACTGCTTTTaGCTTGTGACAGGTACAGAGGATGTTGTCTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: LISSFSSFSNCF*LVTGTEDVVCL Trigger: CAGACAGACAACATCCTCTGTACCTGTCACAAGCAAAAAGCAGTTTGAGAAGGAAGAGAAGGAGCTGATCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS TCA 72 bp | TCTTTACAACTCAGGTTCAACTCCACCAAACGTTCTTaGATGATGGCCCAATCAGCATGTATTTCCTTGCTC | + |
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Preference number: 6 (lower is better) Translates to: SLQLRFNSTKRS*MMAQSACISLL Trigger: GAGCAAGGAAATACATGCTGATTGGGCCATCATTCAAGAACGTTTGGTGGAGTTGAACCTGAGTTGTAAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS CAA 90 bp | AACTCCTGCTTGTTCTCTCGGGCCTCCATGTTCTCCATCTCTAAGTaGTGTAGATATGTCATGATCTCCTTCTCCTTTAATTTCAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: NSCLFSRASMFSISK*CRYVMISFSFNFSS Trigger: AGAACTGAAATTAAAGGAGAAGGAGATCATGACATATCTACACAACTTAGAGATGGAGAACATGGAGGCCCGAGAGAACAAGCAGGAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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| CDS CAA 72 bp | TTGTTCTCTCGGGCCTCCATGTTCTCCATCTCTAAGTaGTGTAGATATGTCATGATCTCCTTCTCCTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: LFSRASMFSISK*CRYVMISFSFN Trigger: ATTAAAGGAGAAGGAGATCATGACATATCTACACAACTTAGAGATGGAGAACATGGAGGCCCGAGAGAACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079447.4 |
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