RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPEER3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067855

Ensembl transcript IDs: ENSMUST00000124677.2

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTaGCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTGGCTCAC +
Preference number: 1 (lower is better)
Translates to: LLLEGQSPQSSLKGC*QNRKGNNTLNQLAH
Trigger: GTGAGCCAGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
3UTR CCA 90 bp TCACTGCATATTAAGAAGTACAGACCTACAGCCTGTATCTCCTCTTaGACTGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGG +
Preference number: 1 (lower is better)
Translates to: SLHIKKYRPTACISS*TAVGGAVTSVLTQG
Trigger: CCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGTCCAAGAGGAGATACAGGCTGTAGGTCTGTACTTCTTAATATGCAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
3UTR GCA 90 bp AACCAAACATTAACAGAAAATTATTGTCCATCAGCACCCTTTCACTaGATATTAAGAAGTACAGACCTACAGCCTGTATCTCCTCTTGGA +
Preference number: 1 (lower is better)
Translates to: NQTLTENYCPSAPFH*ILRSTDLQPVSPLG
Trigger: TCCAAGAGGAGATACAGGCTGTAGGTCTGTACTTCTTAATATGCAGTGAAAGGGTGCTGATGGACAATAATTTTCTGTTAATGTTTGGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
3UTR CAA 90 bp ACTGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTaGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTGGCTCA +
Preference number: 2 (lower is better)
Translates to: TAVGGAVTSVLTQGV*PEQEREQHPESAGS
Trigger: TGAGCCAGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
3UTR CAA 90 bp TTAAGAAGTACAGACCTACAGCCTGTATCTCCTCTTGGACTGCTGTaGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAG +
Preference number: 2 (lower is better)
Translates to: LRSTDLQPVSPLGLL*EGQSPQSSLKGCCQ
Trigger: CTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGTCCAAGAGGAGATACAGGCTGTAGGTCTGTACTTCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
3UTR CCA 72 bp CAGACCTACAGCCTGTATCTCCTCTTGGACTGCTGTTaGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGT +
Preference number: 3 (lower is better)
Translates to: QTYSLYLLLDCC*RGSHLSPHSRG
Trigger: ACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGTCCAAGAGGAGATACAGGCTGTAGGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
3UTR GCA 72 bp GAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTaGCAGAACAGGAAAGGGAACAACACCCTGAATCAG +
Preference number: 3 (lower is better)
Translates to: EGQSPQSSLKGC*QNRKGNNTLNQ
Trigger: CTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
3UTR GCA 72 bp GAAGTACAGACCTACAGCCTGTATCTCCTCTTGGACTaGTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCA +
Preference number: 3 (lower is better)
Translates to: EVQTYSLYLLLD*CWRGSHLSPHS
Trigger: TGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGTCCAAGAGGAGATACAGGCTGTAGGTCTGTACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR TCA 90 bp GACTGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAGCAGCAGGGGGCTCCTaGGGCAGAAACTCATTGTGC +
Preference number: 4 (lower is better)
Translates to: DCCWRGSHLSPHSRGVARAAGGS*GRNSLC
Trigger: GCACAATGAGTTTCTGCCTCAGGAGCCCCCTGCTGC...TCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR GCA 90 bp CTGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACATGTTGGGGATGGAGTaGAGCAGGGGGCTCCTGAGG +
Preference number: 4 (lower is better)
Translates to: LLLEGQSPQSSLKGCCQNMLGME*SRGLLR
Trigger: CCTCAGGAGCCCCCTGCTGCACTCCATCCCCAACAT...GTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp CTCTTGGACTGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTTGTGGATGTTGGGGATaGAGTGCAGCAGGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: LLDCCWRGSHLSPHSRGVCGCWG*SAAGGS
Trigger: GGAGCCCCCTGCTGCACTCCATCCCCAACATCCACA...AACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGTCCAAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR GCA 90 bp CTGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACTTCTGGGTAATGAGGTaGAGCTCTGTGGTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: LLLEGQSPQSSLKGCCQNFWVMR*SSVVSL
Trigger: GAGGCTGACCACAGAGCTGCACCTCATTACCCAGAA...GTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
3UTR CAA 72 bp ACAGACCTACAGCCTGTATCTCCTCTTGGACTGCTGTaGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGG +
Preference number: 4 (lower is better)
Translates to: TDLQPVSPLGLL*EGQSPQSSLKG
Trigger: CCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGTCCAAGAGGAGATACAGGCTGTAGGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
3UTR CAA 72 bp GGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTaGCCAGAACAGGAAAGGGAACAACACCCTGAATCA +
Preference number: 4 (lower is better)
Translates to: GGAVTSVLTQGV*PEQEREQHPES
Trigger: TGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR GCA 90 bp GCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACAGATCAGGCGATCTCTCTaGCCATTTCTCTTCTGGGTA +
Preference number: 4 (lower is better)
Translates to: AVGGAVTSVLTQGVLPEQIRRSL*PFLFWV
Trigger: TACCCAGAAGAGAAATGGGCAGAGAGATCGCCTGAT...CTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR GCA 90 bp TGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACAGGAAAGGTTGGGTCTCATGGTTaGTGGTCTGCTCCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: WRGSHLSPHSRGVARTGKVGSHG*WSAPVC
Trigger: ACAAACAGGAGCAGACCAGCAACCATGAGACCCAAC...CTTTCCTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp TGGACTGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCATCTTCTGGAAGGGCCTaGTCCTCTTTTTCATGGATC +
Preference number: 4 (lower is better)
Translates to: WTAVGGAVTSVLTQGVLPSSGRA*SSFSWI
Trigger: GATCCATGAAAAAGAGGACCAGGCCCTTCCAGAAGA...TGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp TGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACATGCCCATTTCTCTTCTaGGTAATGAGGTGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: CCWRGSHLSPHSRGVARTCPFLF*VMRCSS
Trigger: AGAGCTGCACCTCATTACCCAGAAGAGAAATGGGCA...TGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp TCACTCAAGGGGTGTTGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTGGTAGACTGTGGATGTTaGGGATGGAGTGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: SLKGCCQNRKGNNTLNQLVDCGC*GWSAAG
Trigger: CCCTGCTGCACTCCATCCCCAACATCCACAGTCTAC...CAGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp AAGGGGTGTTGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTGGCTCACCTCTCCCATCCACACTaGCTCTCCCAAAAAGATTGC +
Preference number: 4 (lower is better)
Translates to: KGCCQNRKGNNTLNQLAHLSHPH*LSQKDC
Trigger: GCAATCTTTTTGGGAGAGCCAGTGTGGATGGGAGAG...GTGAGCCAGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp TGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACATTTCTTCCTGGGATGTaGACATTTCAGCTCTTGCTG +
Preference number: 4 (lower is better)
Translates to: CCWRGSHLSPHSRGVARTFLPGM*TFQLLL
Trigger: CAGCAAGAGCTGAAATGTCCACATCCCAGGAAGAAA...TGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR TCA 90 bp TGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACATGTTCACAGAGGACATaGGCTGGTTCTTCTTTAATG +
Preference number: 4 (lower is better)
Translates to: CCWRGSHLSPHSRGVARTCSQRT*AGSSLM
Trigger: CATTAAAGAAGAACCAGCTCATGTCCTCTGTGAACA...TGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR TCA 90 bp TGGACTGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAAGTTTATCTCCTTCTTaGGCTCATGGATGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: WTAVGGAVTSVLTQGVLPSLSPS*AHGCSL
Trigger: AAGAGAACATCCATGAGCTCAAGAAGGAGATAAACT...TGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp TGTTGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTGGCTCACTGGCTTTGGGTGATATCTTTCTaGGAGCCCTCCACATTCTCC +
Preference number: 4 (lower is better)
Translates to: CCQNRKGNNTLNQLAHWLWVISF*EPSTFS
Trigger: GGAGAATGTGGAGGGCTCCCAGAAAGATATCACCCA...AAGCCAGTGAGCCAGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp AGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACAGGAAAGGGAACAACAAGTTGTTGGGTCTCATaGTTGCTGGTCTGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: SHLSPHSRGVARTGKGTTSCWVS*LLVCSC
Trigger: ACAGGAGCAGACCAGCAACCATGAGACCCAACAACT...TGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR TCA 90 bp CTCACTCAAGGGGTGTTGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTGATTCTTCTCCACCATaGGCTGGCTATGTAGGTTTG +
Preference number: 4 (lower is better)
Translates to: LTQGVLPEQEREQHPESADSSPP*AGYVGL
Trigger: CAAACCTACATAGCCAGCTCATGGTGGAGAAGAATC...AGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp AAGGGGTGTTGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTGGCTCACAATGGATGTATCTTCTaGAAGGGCCTGGTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: KGCCQNRKGNNTLNQLAHNGCIF*KGLVLF
Trigger: AAAGAGGACCAGGCCCTTCCAGAAGATACATCCATT...GTGAGCCAGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp GCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACAGACAGAGGACATGAGCTaGTTCTTCTTTAATGATAGT +
Preference number: 4 (lower is better)
Translates to: AVGGAVTSVLTQGVLPEQTEDMS*FFFNDS
Trigger: ACTATCATTAAAGAAGAACCAGCTCATGTCCTCTGT...CTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp AGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACAGGAAAGGGAACAACAAGGAGGCTTTCTTCCTaGGATGTGGACATTTCAGCT +
Preference number: 4 (lower is better)
Translates to: SHLSPHSRGVARTGKGTTRRLSS*DVDISA
Trigger: AGCTGAAATGTCCACATCCCAGGAAGAAAGCCTCCT...TGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CCA 90 bp CTCACTCAAGGGGTGTTGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTTGGTCCTCTTTTTCATaGATCCCTCTTGGAAAGAGA +
Preference number: 4 (lower is better)
Translates to: LTQGVLPEQEREQHPESAWSSFS*IPLGKR
Trigger: TCTCTTTCCAAGAGGGATCCATGAAAAAGAGGACCA...AGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR TCA 90 bp CTCACTCAAGGGGTGTTGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTTCTCCATTTCCATTTTaGACTCCTTCTCACTTAGGT +
Preference number: 4 (lower is better)
Translates to: LTQGVLPEQEREQHPESASPFPF*TPSHLG
Trigger: ACCTAAGTGAGAAGGAGTTCAAAATGGAAATGGAGA...AGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CAA 90 bp TGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACAGGAAAGGGTAGACTGTGGATGTaGGGGATGGAGTGCAGCAGG +
Preference number: 5 (lower is better)
Translates to: WRGSHLSPHSRGVARTGKGRLWM*GMECSR
Trigger: CCTGCTGCACTCCATCCCCAACATCCACAGTCTACC...CTTTCCTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CAA 90 bp GGACTGCTGTTGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGTGGACATTTCAGCTCTaGCTGGAGTCTCTGAGTCCT +
Preference number: 5 (lower is better)
Translates to: GLLLEGQSPQSSLKGCCQWTFQL*LESLSP
Trigger: AGGACTCAGAGACTCCAGCAAGAGCTGAAATGTCCA...CTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCAACAGCAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CAA 90 bp TGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACAGGAAAGCTGGTCTGCTCCTGTTaGTCTTTACCATTCAGGTTC +
Preference number: 5 (lower is better)
Translates to: WRGSHLSPHSRGVARTGKLVCSC*SLPFRF
Trigger: GAACCTGAATGGTAAAGACAAACAGGAGCAGACCAG...CTTTCCTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CCA 90 bp CCACATTCTCCAAGTCCACCTCCTTCGTTCTTCATTACTCTCAGATaGAAGGCCAACATCCTTCCTCCTCTCTCTGGTCTCTCTCCCATC +
Preference number: 5 (lower is better)
Translates to: PHSPSPPPSFFITLR*KANILPPLSGLSPI
Trigger: GATGGGAGAGAGACCAGAGAGAGGAGGAAGGATGTTGGCCTTCCATCTGAGAGTAATGAAGAACGAAGGAGGTGGACTTGGAGAATGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CCA 90 bp CCCTCTTGGAAAGAGATCAGGCGATCTCTCTGCCCATTTCTCTTCTaGGTAATGAGGTGCAGCTCTGTGGTCAGCCTCTCCATTTCCATT +
Preference number: 5 (lower is better)
Translates to: PSWKEIRRSLCPFLF*VMRCSSVVSLSISI
Trigger: AATGGAAATGGAGAGGCTGACCACAGAGCTGCACCTCATTACCCAGAAGAGAAATGGGCAGAGAGATCGCCTGATCTCTTTCCAAGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS GCA 90 bp GAGATCAGGCGATCTCTCTGCCCATTTCTCTTCTGGGTAATGAGGTaGAGCTCTGTGGTCAGCCTCTCCATTTCCATTTTGAACTCCTTC +
Preference number: 5 (lower is better)
Translates to: EIRRSLCPFLFWVMR*SSVVSLSISILNSF
Trigger: GAAGGAGTTCAAAATGGAAATGGAGAGGCTGACCACAGAGCTGCACCTCATTACCCAGAAGAGAAATGGGCAGAGAGATCGCCTGATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CAA 90 bp TGGAGGGGCAGTCACCTCAGTCCTCACTCAAGGGGTGTTGCCAGAACAGGAAAGGCTGGCTATGTAGGTTaGAATAGAAGTTTATCTCCT +
Preference number: 5 (lower is better)
Translates to: WRGSHLSPHSRGVARTGKAGYVG*NRSLSP
Trigger: AGGAGATAAACTTCTATTCAAACCTACATAGCCAGC...CTTTCCTGTTCTGGCAACACCCCTTGAGTGAGGACTGAGGTGACTGCCCCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CAA 90 bp TCACTCAAGGGGTGTTGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTGATCTCCAACTCTAAGTaGTTCACAGAGGACATGAGC +
Preference number: 5 (lower is better)
Translates to: SLKGCCQNRKGNNTLNQLISNSK*FTEDMS
Trigger: GCTCATGTCCTCTGTGAACAACTTAGAGTTGGAGAT...CAGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACACCCCTTGAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CAA 90 bp TGTTGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTGGCTCACTGGCTTCTCTCCATTTCCATTTaGAACTCCTTCTCACTTAGG +
Preference number: 5 (lower is better)
Translates to: CCQNRKGNNTLNQLAHWLLSISI*NSFSLR
Trigger: CCTAAGTGAGAAGGAGTTCAAAATGGAAATGGAGAG...AAGCCAGTGAGCCAGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS-3UTR CAA 90 bp TGTTGCCAGAACAGGAAAGGGAACAACACCCTGAATCAGCTGGCTCACTGGCTTAAGTTTATCTCCTTCTaGAGCTCATGGATGTTCTCT +
Preference number: 5 (lower is better)
Translates to: CCQNRKGNNTLNQLAHWLKFISF*SSWMFS
Trigger: AGAGAACATCCATGAGCTCAAGAAGGAGATAAACTT...AAGCCAGTGAGCCAGCTGATTCAGGGTGTTGTTCCCTTTCCTGTTCTGGCAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS TCA 72 bp GTGGACATTTCAGCTCTTGCTGGAGTCTCTGAGTCCTaGAGTTGTTGGGTCTCATGGTTGCTGGTCTGCTCC +
Preference number: 6 (lower is better)
Translates to: VDISALAGVSES*SCWVSWLLVCS
Trigger: GGAGCAGACCAGCAACCATGAGACCCAACAACTTCAGGACTCAGAGACTCCAGCAAGAGCTGAAATGTCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CCA 72 bp AAAGAGATCAGGCGATCTCTCTGCCCATTTCTCTTCTaGGTAATGAGGTGCAGCTCTGTGGTCAGCCTCTCC +
Preference number: 6 (lower is better)
Translates to: KEIRRSLCPFLF*VMRCSSVVSLS
Trigger: GGAGAGGCTGACCACAGAGCTGCACCTCATTACCCAGAAGAGAAATGGGCAGAGAGATCGCCTGATCTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS TCA 72 bp GGTGCAGCTCTGTGGTCAGCCTCTCCATTTCCATTTTaGACTCCTTCTCACTTAGGTCACGTACAGTGGGTG +
Preference number: 6 (lower is better)
Translates to: GAALWSASPFPF*TPSHLGHVQWV
Trigger: CACCCACTGTACGTGACCTAAGTGAGAAGGAGTTCAAAATGGAAATGGAGAGGCTGACCACAGAGCTGCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CCA 72 bp CCAAGTCCACCTCCTTCGTTCTTCATTACTCTCAGATaGAAGGCCAACATCCTTCCTCCTCTCTCTGGTCTC +
Preference number: 6 (lower is better)
Translates to: PSPPPSFFITLR*KANILPPLSGL
Trigger: GAGACCAGAGAGAGGAGGAAGGATGTTGGCCTTCCATCTGAGAGTAATGAAGAACGAAGGAGGTGGACTTGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS GCA 72 bp CGATCTCTCTGCCCATTTCTCTTCTGGGTAATGAGGTaGAGCTCTGTGGTCAGCCTCTCCATTTCCATTTTG +
Preference number: 6 (lower is better)
Translates to: RSLCPFLFWVMR*SSVVSLSISIL
Trigger: CAAAATGGAAATGGAGAGGCTGACCACAGAGCTGCACCTCATTACCCAGAAGAGAAATGGGCAGAGAGATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS GCA 72 bp ATGGATCCCTCTTGGAAAGAGATCAGGCGATCTCTCTaGCCATTTCTCTTCTGGGTAATGAGGTGCAGCTCT +
Preference number: 6 (lower is better)
Translates to: MDPSWKEIRRSL*PFLFWVMRCSS
Trigger: AGAGCTGCACCTCATTACCCAGAAGAGAAATGGGCAGAGAGATCGCCTGATCTCTTTCCAAGAGGGATCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CCA 72 bp GAAACTCATTGTGCAGGAGGCTTTCTTCCTGGGATGTaGACATTTCAGCTCTTGCTGGAGTCTCTGAGTCCT +
Preference number: 6 (lower is better)
Translates to: ETHCAGGFLPGM*TFQLLLESLSP
Trigger: AGGACTCAGAGACTCCAGCAAGAGCTGAAATGTCCACATCCCAGGAAGAAAGCCTCCTGCACAATGAGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CCA 72 bp GTACTGAATGTAAGAAGATTCATTCAAGGTAGACTGTaGATGTTGGGGATGGAGTGCAGCAGGGGGCTCCTG +
Preference number: 6 (lower is better)
Translates to: VLNVRRFIQGRL*MLGMECSRGLL
Trigger: CAGGAGCCCCCTGCTGCACTCCATCCCCAACATCCACAGTCTACCTTGAATGAATCTTCTTACATTCAGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS GCA 72 bp GAGTCTCTGAGTCCTGAAGTTGTTGGGTCTCATGGTTaGTGGTCTGCTCCTGTTTGTCTTTACCATTCAGGT +
Preference number: 6 (lower is better)
Translates to: ESLSPEVVGSHG*WSAPVCLYHSG
Trigger: ACCTGAATGGTAAAGACAAACAGGAGCAGACCAGCAACCATGAGACCCAACAACTTCAGGACTCAGAGACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CAA 90 bp TGGGTAATGAGGTGCAGCTCTGTGGTCAGCCTCTCCATTTCCATTTaGAACTCCTTCTCACTTAGGTCACGTACAGTGGGTGATATCTTT +
Preference number: 6 (lower is better)
Translates to: WVMRCSSVVSLSISI*NSFSLRSRTVGDIF
Trigger: AAAGATATCACCCACTGTACGTGACCTAAGTGAGAAGGAGTTCAAAATGGAAATGGAGAGGCTGACCACAGAGCTGCACCTCATTACCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CAA 90 bp AATGTACTGAATGTAAGAAGATTCATTCAAGGTAGACTGTGGATGTaGGGGATGGAGTGCAGCAGGGGGCTCCTGAGGCAGAAACTCATT +
Preference number: 6 (lower is better)
Translates to: NVLNVRRFIQGRLWM*GMECSRGLLRQKLI
Trigger: AATGAGTTTCTGCCTCAGGAGCCCCCTGCTGCACTCCATCCCCAACATCCACAGTCTACCTTGAATGAATCTTCTTACATTCAGTACATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CCA 72 bp TCTCTGAGTCCTGAAGTTGTTGGGTCTCATGGTTGCTaGTCTGCTCCTGTTTGTCTTTACCATTCAGGTTCA +
Preference number: 6 (lower is better)
Translates to: SLSPEVVGSHGC*SAPVCLYHSGS
Trigger: TGAACCTGAATGGTAAAGACAAACAGGAGCAGACCAGCAACCATGAGACCCAACAACTTCAGGACTCAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CCA 72 bp GTTGTTCATAGAATGGATGTATCTTCTGGAAGGGCCTaGTCCTCTTTTTCATGGATCCCTCTTGGAAAGAGA +
Preference number: 6 (lower is better)
Translates to: VVHRMDVSSGRA*SSFSWIPLGKR
Trigger: TCTCTTTCCAAGAGGGATCCATGAAAAAGAGGACCAGGCCCTTCCAGAAGATACATCCATTCTATGAACAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS TCA 72 bp TACCATTCAGGTTCAAGTCAACCAAATATTTCTCAATaGGAGCCCAATCAATCTGTACTTCCTCGCTCTCCC +
Preference number: 6 (lower is better)
Translates to: YHSGSSQPNISQ*EPNQSVLPRSP
Trigger: GGGAGAGCGAGGAAGTACAGATTGATTGGGCTCTCATTGAGAAATATTTGGTTGACTTGAACCTGAATGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2
CDS CAA 72 bp AGTTGTTGGGTCTCATGGTTGCTGGTCTGCTCCTGTTaGTCTTTACCATTCAGGTTCAAGTCAACCAAATAT +
Preference number: 6 (lower is better)
Translates to: SCWVSWLLVCSC*SLPFRFKSTKY
Trigger: ATATTTGGTTGACTTGAACCTGAATGGTAAAGACAAACAGGAGCAGACCAGCAACCATGAGACCCAACAACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124677.2