Pregenerated sensors for SPEER2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063163Ensembl transcript IDs: ENSMUST00000076500.14, ENSMUST00000166256.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTaGCAGAACATGAAAGGGAACAACACCCTGAATCAGATAGCTCAC | + |
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Preference number: 1 (lower is better) Translates to: LLLAGQSPQSSLMGC*QNMKGNNTLNQIAH Trigger: GTGAGCTATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| 3UTR CAA 90 bp | TTAAGTAGTACAGACCTACAGCCTGTATCTCCTCTTGGACTGCTGTaGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: LSSTDLQPVSPLGLL*AGQSPQSSLMGCCQ Trigger: CTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTCCAAGAGGAGATACAGGCTGTAGGTCTGTACTACTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| 3UTR CAA 90 bp | ACTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTaGCCAGAACATGAAAGGGAACAACACCCTGAATCAGATAGCTCA | + |
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Preference number: 2 (lower is better) Translates to: TAVGRAVTSVLSHGV*PEHEREQHPESDSS Trigger: TGAGCTATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| 3UTR CCA 72 bp | CAGACCTACAGCCTGTATCTCCTCTTGGACTGCTGTTaGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGT | + |
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Preference number: 3 (lower is better) Translates to: QTYSLYLLLDCC*QGSHLSPLSWG Trigger: ACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTCCAAGAGGAGATACAGGCTGTAGGTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| 3UTR GCA 72 bp | GCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTaGCAGAACATGAAAGGGAACAACACCCTGAATCAG | + |
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Preference number: 3 (lower is better) Translates to: AGQSPQSSLMGC*QNMKGNNTLNQ Trigger: CTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| 3UTR GCA 72 bp | GTAGTACAGACCTACAGCCTGTATCTCCTCTTGGACTaGTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCA | + |
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Preference number: 3 (lower is better) Translates to: VVQTYSLYLLLD*CWQGSHLSPLS Trigger: TGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTCCAAGAGGAGATACAGGCTGTAGGTCTGTACTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| 3UTR-3UTR CAA 90 bp | ACAGACCTACAGCCTGTATCTCCTCTTGGACTGCTGTTGGCAGGGCAGTCACCTCTCTCTCATGGGGTGTaGCCAGAACATGAAAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: TDLQPVSPLGLLLAGQSPLSHGV*PEHERE Trigger: TTCCCTTTCATGTTCTGGCAACACCCCATGAGAGAG...AGGTGACTGCCCTGCCAACAGCAGTCCAAGAGGAGATACAGGCTGTAGGTCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| 3UTR GCA 72 bp | GTAACAGAAATTTATTGTCCATCAGCACCCTTTCACTaGATATTAAGTAGTACAGACCTACAGCCTGTATCT | + |
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Preference number: 3 (lower is better) Translates to: VTEIYCPSAPFH*ILSSTDLQPVS Trigger: AGATACAGGCTGTAGGTCTGTACTACTTAATATGCAGTGAAAGGGTGCTGATGGACAATAAATTTCTGTTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CCA 90 bp | CTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAGAACCTCTCCCGTCCACACTaGCTCTCCCAAAAAGATTGC | + |
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Preference number: 4 (lower is better) Translates to: LLLAGQSPQSSLMGCCQNLSRPH*LSQKDC Trigger: GCAATCTTTTTGGGAGAGCCAGTGTGGACGGGAGAG...GTTCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| 3UTR CAA 72 bp | ACAGACCTACAGCCTGTATCTCCTCTTGGACTGCTGTaGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGG | + |
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Preference number: 4 (lower is better) Translates to: TDLQPVSPLGLL*AGQSPQSSLMG Trigger: CCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTCCAAGAGGAGATACAGGCTGTAGGTCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR TCA 90 bp | GACTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAGATTCTCTTCTGGGTCATaGGGTGCAGCTCTGTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: DCCWQGSHLSPLSWGVARFSSGS*GAALLS Trigger: TGACAACAGAGCTGCACCTCATGACCCAGAAGAGAA...TCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR GCA 90 bp | GGACTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAGATCAGGCAAGCTCTCTaGTCATTTCTCTTCTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: GLLLAGQSPQSSLMGCCQIRQAL*SFLFWV Trigger: GACCCAGAAGAGAAATGAGCAGAGAGCTTGCCTGAT...CTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CCA 90 bp | GGACTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAGTTAGGTCAGGTGCAGTaGATGATGTCTGTCTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: GLLLAGQSPQSSLMGCCQLGQVQ*MMSVCE Trigger: CTCACAGACAGACATCATCCACTGCACCTGACCTAA...CTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CCA 90 bp | ATCTCCTCTTGGACTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGAGGGGTCTCCTGAGGTaGAAACTCATTCTGCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: ISSWTAVGRAVTSVLSHGRGLLR*KLILQE Trigger: CTCCTGCAGAATGAGTTTCCACCTCAGGAGACCCCT...CCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTCCAAGAGGAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR TCA 90 bp | CTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAGAACTCATTGATCCCTCTTTaGAAGCGATCAGGCAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LLLAGQSPQSSLMGCCQNSLIPL*KRSGKL Trigger: GAGCTTGCCTGATCGCTTTCAAAGAGGGATCAATGA...GTTCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| 3UTR CAA 72 bp | GGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTaGCCAGAACATGAAAGGGAACAACACCCTGAATCA | + |
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Preference number: 4 (lower is better) Translates to: GRAVTSVLSHGV*PEHEREQHPES Trigger: TGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CCA 90 bp | GCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAGAACATGTAGATTGTGGGTATTaGGAATGGAGTTCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: AVGRAVTSVLSHGVLPEHVDCGY*EWSSAG Trigger: CCCTGCTGAACTCCATTCCCAATACCCACAATCTAC...ATGTTCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR TCA 90 bp | AGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAGAACATGAAAGGGAAGATGATGTCTGTCTGTaGGCCCTCCACATTCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: RAVTSVLSHGVLPEHEREDDVCL*ALHILQ Trigger: TTGGAGAATGTGGAGGGCTCACAGACAGACATCATC...TTCCCTTTCATGTTCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR TCA 90 bp | CCAGAACATGAAAGGGAACAACACCCTGAATCAGATAGCTCACTGGCTTCCTCCGTCAGGTGCAGTGGATaGTGTCTGTCTGTGAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: PEHEREQHPESDSSLASSVRCSG*CLSVSP Trigger: AGGGCTCACAGACAGACATCATCCACTGCACCTGAC...GGAGGAAGCCAGTGAGCTATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CCA 90 bp | ATGGGGTGTTGCCAGAACATGAAAGGGAACAACACCCTGAATCAGATAGCTCACCCTTCCTCCTCTCTCTaGACTCTCTCCCGTCCACAC | + |
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Preference number: 4 (lower is better) Translates to: MGCCQNMKGNNTLNQIAHPSSSL*TLSRPH Trigger: GTGTGGACGGGAGAGAGTCCAGAGAGAGGAGGAAGG...GTGAGCTATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACACCCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CCA 90 bp | CTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAGAACATCCAAGGTAGATTGTaGGTATTGGGAATGGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LLLAGQSPQSSLMGCCQNIQGRL*VLGMEF Trigger: GAACTCCATTCCCAATACCCACAATCTACCTTGGAT...GTTCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR TCA 90 bp | ATGGGGTGTTGCCAGAACATGAAAGGGAACAACACCCTGAATCAGATAGCTCACTCAGCAGGGGTCTCCTaGGGTGGAAACTCATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: MGCCQNMKGNNTLNQIAHSAGVS*GGNSFC Trigger: GCAGAATGAGTTTCCACCTCAGGAGACCCCTGCTGA...GTGAGCTATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACACCCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CCA 90 bp | ATGGGGTGTTGCCAGAACATGAAAGGGAACAACACCCTGAATCAGATAGCTCACTGCTCATTTCTCTTCTaGGTCATGAGGTGCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: MGCCQNMKGNNTLNQIAHCSFLF*VMRCSS Trigger: AGAGCTGCACCTCATGACCCAGAAGAGAAATGAGCA...GTGAGCTATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACACCCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CCA 90 bp | CTCATGGGGTGTTGCCAGAACATGAAAGGGAACAACACCCTGAATCAGATAGCTAGTTGTTGGGTCTCATaGTTGCTGGTCTGTTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: LMGCCQNMKGNNTLNQIASCWVS*LLVCSC Trigger: ACAAGAACAGACCAGCAACCATGAGACCCAACAACT...AGCTATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACACCCCATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR TCA 90 bp | TGTTGCCAGAACATGAAAGGGAACAACACCCTGAATCAGATAGCTCACTGGCTTGGTCCTCTTGTTCATTaGTCCCTCTTTGAAAGCGAT | + |
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Preference number: 4 (lower is better) Translates to: CCQNMKGNNTLNQIAHWLGPLVH*SLFESD Trigger: ATCGCTTTCAAAGAGGGATCAATGAACAAGAGGACC...AAGCCAGTGAGCTATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CCA 90 bp | CTCTCTCATGGGGTGTTGCCAGAACATGAAAGGGAACAACACCCTGAATCAGATTTCATTACTCTCAAATaGAAGGCCAGCATCCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LSHGVLPEHEREQHPESDFITLK*KASILP Trigger: AGGAAGGATGCTGGCCTTCCATTTGAGAGTAATGAA...ATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACACCCCATGAGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR TCA 90 bp | TGTTGCCAGAACATGAAAGGGAACAACACCCTGAATCAGATAGCTCACTGGCTTCCAAATATTTCTCAATaGGAGCCCAATCAATCTGTA | + |
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Preference number: 4 (lower is better) Translates to: CCQNMKGNNTLNQIAHWLPNISQ*EPNQSV Trigger: TACAGATTGATTGGGCTCTCATTGAGAAATATTTGG...AAGCCAGTGAGCTATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR GCA 90 bp | GTAACAGAAATTTATTGTCCATCAGCACCCTTTCACTGCATATTAAGTAGTACAGGTGGAAACTCATTCTaGAGGAGGCTCTCTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: VTEIYCPSAPFHCILSSTGGNSF*RRLSSW Trigger: CCAGGAAGAGAGCCTCCTGCAGAATGAGTTTCCACC...TGTACTACTTAATATGCAGTGAAAGGGTGCTGATGGACAATAAATTTCTGTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CAA 90 bp | GACTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAGATGTTGGGTCTCATGGTaGCTGGTCTGTTCTTGTTCG | + |
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Preference number: 5 (lower is better) Translates to: DCCWQGSHLSPLSWGVARCWVSW*LVCSCS Trigger: CGAACAAGAACAGACCAGCAACCATGAGACCCAACA...TCTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CAA 90 bp | TCTTGGACTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGTCCTTCTTGAGCTCTTaGATGTTCTCTTGGGCCTCA | + |
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Preference number: 5 (lower is better) Translates to: SWTAVGRAVTSVLSHGVLSFLSS*MFSWAS Trigger: TGAGGCCCAAGAGAACATCAAAGAGCTCAAGAAGGA...CAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTCCAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CAA 90 bp | GGACTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGCCAGGCCGGCTATGTAGGTTaGTATAGTAGTTTATCTCCT | + |
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Preference number: 5 (lower is better) Translates to: GLLLAGQSPQSSLMGCCQAGYVG*YSSLSP Trigger: AGGAGATAAACTACTATACAAACCTACATAGCCGGC...CTGGCAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CAA 90 bp | TCTTGGACTGCTGTTGGCAGGGCAGTCACCTCAGTCCTCTCTCATGGGGTGTTGTTCATCCAAGGTAGATaGTGGGTATTGGGAATGGAG | + |
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Preference number: 5 (lower is better) Translates to: SWTAVGRAVTSVLSHGVLFIQGR*WVLGME Trigger: CTCCATTCCCAATACCCACAATCTACCTTGGATGAA...CAACACCCCATGAGAGAGGACTGAGGTGACTGCCCTGCCAACAGCAGTCCAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS TCA 90 bp | AAGGTAGATTGTGGGTATTGGGAATGGAGTTCAGCAGGGGTCTCCTaGGGTGGAAACTCATTCTGCAGGAGGCTCTCTTCCTGGAATGTG | + |
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Preference number: 5 (lower is better) Translates to: KVDCGYWEWSSAGVS*GGNSFCRRLSSWNV Trigger: CACATTCCAGGAAGAGAGCCTCCTGCAGAATGAGTTTCCACCTCAGGAGACCCCTGCTGAACTCCATTCCCAATACCCACAATCTACCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CCA 90 bp | CCCTCTTTGAAAGCGATCAGGCAAGCTCTCTGCTCATTTCTCTTCTaGGTCATGAGGTGCAGCTCTGTTGTCAGCCTCTCCTTTTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: PSLKAIRQALCSFLF*VMRCSSVVSLSFSF Trigger: AAAGGAAAAGGAGAGGCTGACAACAGAGCTGCACCTCATGACCCAGAAGAGAAATGAGCAGAGAGCTTGCCTGATCGCTTTCAAAGAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CCA 90 bp | AGATTGTGGGTATTGGGAATGGAGTTCAGCAGGGGTCTCCTGAGGTaGAAACTCATTCTGCAGGAGGCTCTCTTCCTGGAATGTGGATAT | + |
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Preference number: 5 (lower is better) Translates to: RLWVLGMEFSRGLLR*KLILQEALFLECGY Trigger: ATATCCACATTCCAGGAAGAGAGCCTCCTGCAGAATGAGTTTCCACCTCAGGAGACCCCTGCTGAACTCCATTCCCAATACCCACAATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS GCA 90 bp | CTCTTGTTCATTGATCCCTCTTTGAAAGCGATCAGGCAAGCTCTCTaGTCATTTCTCTTCTGGGTCATGAGGTGCAGCTCTGTTGTCAGC | + |
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Preference number: 5 (lower is better) Translates to: LLFIDPSLKAIRQAL*SFLFWVMRCSSVVS Trigger: GCTGACAACAGAGCTGCACCTCATGACCCAGAAGAGAAATGAGCAGAGAGCTTGCCTGATCGCTTTCAAAGAGGGATCAATGAACAAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CCA 90 bp | CCTGAGGTGGAAACTCATTCTGCAGGAGGCTCTCTTCCTGGAATGTaGATATTTCAGCTCTTGCTGGAGTCTCTGAGTCCTGAAGTTGTT | + |
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Preference number: 5 (lower is better) Translates to: PEVETHSAGGSLPGM*IFQLLLESLSPEVV Trigger: AACAACTTCAGGACTCAGAGACTCCAGCAAGAGCTGAAATATCCACATTCCAGGAAGAGAGCCTCCTGCAGAATGAGTTTCCACCTCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CCA 90 bp | CCTGAGGTGGAAACTCATTCTGCAGGAGGCTCTCTTCCTGGAATGTaGATATTTCAGCTCTTGCTGGAGTCTCTGAGTCGTATAGTAGTT | + |
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Preference number: 5 (lower is better) Translates to: PEVETHSAGGSLPGM*IFQLLLESLSRIVV Trigger: AACTACTATACGACTCAGAGACTCCAGCAAGAGCTGAAATATCCACATTCCAGGAAGAGAGCCTCCTGCAGAATGAGTTTCCACCTCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166256.2 |
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| CDS-3UTR CAA 90 bp | CTCATGGGGTGTTGCCAGAACATGAAAGGGAACAACACCCTGAATCAGATAGCTTGGATATTTCAGCTCTaGCTGGAGTCTCTGAGTCCT | + |
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Preference number: 5 (lower is better) Translates to: LMGCCQNMKGNNTLNQIAWIFQL*LESLSP Trigger: AGGACTCAGAGACTCCAGCAAGAGCTGAAATATCCA...AGCTATCTGATTCAGGGTGTTGTTCCCTTTCATGTTCTGGCAACACCCCATGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS-3UTR CAA 90 bp | TGTCCATCAGCACCCTTTCACTGCATATTAAGTAGTACAGACCTACAGCCTGTAGGTAGATTGTGGGTATaGGGAATGGAGTTCAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: CPSAPFHCILSSTDLQPVGRLWV*GMEFSR Trigger: CCTGCTGAACTCCATTCCCAATACCCACAATCTACC...TACAGGCTGTAGGTCTGTACTACTTAATATGCAGTGAAAGGGTGCTGATGGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CCA 90 bp | CGAGGAAATGTACTGAATGTAATTAGATTCATCCAAGGTAGATTGTaGGTATTGGGAATGGAGTTCAGCAGGGGTCTCCTGAGGTGGAAA | + |
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Preference number: 5 (lower is better) Translates to: RGNVLNVIRFIQGRL*VLGMEFSRGLLRWK Trigger: TTTCCACCTCAGGAGACCCCTGCTGAACTCCATTCCCAATACCCACAATCTACCTTGGATGAATCTAATTACATTCAGTACATTTCCTCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS TCA 90 bp | GTTCGTCTTTACCATTCAGGTTCAAGTCAACCAAATATTTCTCAATaGGAGCCCAATCAATCTGTACTTCCTTGCTCTCCCGCTTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: VRLYHSGSSQPNISQ*EPNQSVLPCSPASV Trigger: CACAGAAGCGGGAGAGCAAGGAAGTACAGATTGATTGGGCTCTCATTGAGAAATATTTGGTTGACTTGAACCTGAATGGTAAAGACGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS TCA 90 bp | CTTGGGCCTCAATATTCTCCATCTGTAACTTGTGCAGAGAGGACATaGCCTGGTTCTTCTTTAATATCAGTTGTTTATAGAACGGATTTA | + |
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Preference number: 5 (lower is better) Translates to: LGPQYSPSVTCAERT*PGSSLISVVYRTDL Trigger: TAAATCCGTTCTATAAACAACTGATATTAAAGAAGAACCAGGTCATGTCCTCTCTGCACAAGTTACAGATGGAGAATATTGAGGCCCAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076500.14 ENSMUST00000166256.2 |
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| CDS TCA 72 bp | TGTGGGTATTGGGAATGGAGTTCAGCAGGGGTCTCCTaGGGTGGAAACTCATTCTGCAGGAGGCTCTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: CGYWEWSSAGVS*GGNSFCRRLSS Trigger: GGAAGAGAGCCTCCTGCAGAATGAGTTTCCACCTCAGGAGACCCCTGCTGAACTCCATTCCCAATACCCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CCA 72 bp | CCAAGTCCACCTCCTTCGTCCTTCATTACTCTCAAATaGAAGGCCAGCATCCTTCCTCCTCTCTCTGGACTC | + |
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Preference number: 6 (lower is better) Translates to: PSPPPSSFITLK*KASILPPLSGL Trigger: GAGTCCAGAGAGAGGAGGAAGGATGCTGGCCTTCCATTTGAGAGTAATGAAGGACGAAGGAGGTGGACTTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CCA 72 bp | AAAGCGATCAGGCAAGCTCTCTGCTCATTTCTCTTCTaGGTCATGAGGTGCAGCTCTGTTGTCAGCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: KAIRQALCSFLF*VMRCSSVVSLS Trigger: GGAGAGGCTGACAACAGAGCTGCACCTCATGACCCAGAAGAGAAATGAGCAGAGAGCTTGCCTGATCGCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CCA 72 bp | GTATTGGGAATGGAGTTCAGCAGGGGTCTCCTGAGGTaGAAACTCATTCTGCAGGAGGCTCTCTTCCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: VLGMEFSRGLLR*KLILQEALFLE Trigger: TTCCAGGAAGAGAGCCTCCTGCAGAATGAGTTTCCACCTCAGGAGACCCCTGCTGAACTCCATTCCCAATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS TCA 72 bp | TCAGGCAAGCTCTCTGCTCATTTCTCTTCTGGGTCATaGGGTGCAGCTCTGTTGTCAGCCTCTCCTTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SGKLSAHFSSGS*GAALLSASPFP Trigger: AGGAAAAGGAGAGGCTGACAACAGAGCTGCACCTCATGACCCAGAAGAGAAATGAGCAGAGAGCTTGCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CAA 90 bp | CATTCTGCAGGAGGCTCTCTTCCTGGAATGTGGATATTTCAGCTCTaGCTGGAGTCTCTGAGTCCTGAAGTTGTTGGGTCTCATGGTTGC | + |
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Preference number: 6 (lower is better) Translates to: HSAGGSLPGMWIFQL*LESLSPEVVGSHGC Trigger: GCAACCATGAGACCCAACAACTTCAGGACTCAGAGACTCCAGCAAGAGCTGAAATATCCACATTCCAGGAAGAGAGCCTCCTGCAGAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CAA 72 bp | GGAGGCTCTCTTCCTGGAATGTGGATATTTCAGCTCTaGCTGGAGTCTCTGAGTCCTGAAGTTGTTGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: GGSLPGMWIFQL*LESLSPEVVGS Trigger: AGACCCAACAACTTCAGGACTCAGAGACTCCAGCAAGAGCTGAAATATCCACATTCCAGGAAGAGAGCCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS TCA 72 bp | GTGGATATTTCAGCTCTTGCTGGAGTCTCTGAGTCCTaGAGTTGTTGGGTCTCATGGTTGCTGGTCTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: VDISALAGVSES*SCWVSWLLVCS Trigger: AGAACAGACCAGCAACCATGAGACCCAACAACTTCAGGACTCAGAGACTCCAGCAAGAGCTGAAATATCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS GCA 72 bp | ATTGATCCCTCTTTGAAAGCGATCAGGCAAGCTCTCTaGTCATTTCTCTTCTGGGTCATGAGGTGCAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: IDPSLKAIRQAL*SFLFWVMRCSS Trigger: AGAGCTGCACCTCATGACCCAGAAGAGAAATGAGCAGAGAGCTTGCCTGATCGCTTTCAAAGAGGGATCAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CAA 72 bp | TGTAAGGGCCTGGTCCTCTTGTTCATTGATCCCTCTTaGAAAGCGATCAGGCAAGCTCTCTGCTCATTTCTC | + |
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Preference number: 6 (lower is better) Translates to: CKGLVLLFIDPS*KAIRQALCSFL Trigger: GAGAAATGAGCAGAGAGCTTGCCTGATCGCTTTCAAAGAGGGATCAATGAACAAGAGGACCAGGCCCTTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CAA 90 bp | CACCGAGGAAATGTACTGAATGTAATTAGATTCATCCAAGGTAGATaGTGGGTATTGGGAATGGAGTTCAGCAGGGGTCTCCTGAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: HRGNVLNVIRFIQGR*WVLGMEFSRGLLRW Trigger: CCACCTCAGGAGACCCCTGCTGAACTCCATTCCCAATACCCACAATCTACCTTGGATGAATCTAATTACATTCAGTACATTTCCTCGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CCA 72 bp | TCTCTGAGTCCTGAAGTTGTTGGGTCTCATGGTTGCTaGTCTGTTCTTGTTCGTCTTTACCATTCAGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: SLSPEVVGSHGC*SVLVRLYHSGS Trigger: TGAACCTGAATGGTAAAGACGAACAAGAACAGACCAGCAACCATGAGACCCAACAACTTCAGGACTCAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CCA 72 bp | GTACTGAATGTAATTAGATTCATCCAAGGTAGATTGTaGGTATTGGGAATGGAGTTCAGCAGGGGTCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: VLNVIRFIQGRL*VLGMEFSRGLL Trigger: CAGGAGACCCCTGCTGAACTCCATTCCCAATACCCACAATCTACCTTGGATGAATCTAATTACATTCAGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS TCA 72 bp | TACCATTCAGGTTCAAGTCAACCAAATATTTCTCAATaGGAGCCCAATCAATCTGTACTTCCTTGCTCTCCC | + |
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Preference number: 6 (lower is better) Translates to: YHSGSSQPNISQ*EPNQSVLPCSP Trigger: GGGAGAGCAAGGAAGTACAGATTGATTGGGCTCTCATTGAGAAATATTTGGTTGACTTGAACCTGAATGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS GCA 72 bp | TTCTCTTGGGCCTCAATATTCTCCATCTGTAACTTGTaGAGAGAGGACATGACCTGGTTCTTCTTTAATATC | + |
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Preference number: 6 (lower is better) Translates to: FSWASIFSICNL*REDMTWFFFNI Trigger: GATATTAAAGAAGAACCAGGTCATGTCCTCTCTGCACAAGTTACAGATGGAGAATATTGAGGCCCAAGAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076500.14 ENSMUST00000166256.2 |
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| CDS CAA 72 bp | ATGTTCTCTTGGGCCTCAATATTCTCCATCTGTAACTaGTGCAGAGAGGACATGACCTGGTTCTTCTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: MFSWASIFSICN*CREDMTWFFFN Trigger: ATTAAAGAAGAACCAGGTCATGTCCTCTCTGCACAAGTTACAGATGGAGAATATTGAGGCCCAAGAGAACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076500.14 ENSMUST00000166256.2 |
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| CDS CAA 72 bp | AATGTACTGAATGTAATTAGATTCATCCAAGGTAGATaGTGGGTATTGGGAATGGAGTTCAGCAGGGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: NVLNVIRFIQGR*WVLGMEFSRGL Trigger: GAGACCCCTGCTGAACTCCATTCCCAATACCCACAATCTACCTTGGATGAATCTAATTACATTCAGTACATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS CAA 90 bp | AGCTCTTTGATGTTCTCTTGGGCCTCAATATTCTCCATCTGTAACTaGTGCAGAGAGGACATGACCTGGTTCTTCTTTAATATCAGTTGT | + |
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Preference number: 6 (lower is better) Translates to: SSLMFSWASIFSICN*CREDMTWFFFNISC Trigger: ACAACTGATATTAAAGAAGAACCAGGTCATGTCCTCTCTGCACAAGTTACAGATGGAGAATATTGAGGCCCAAGAGAACATCAAAGAGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076500.14 ENSMUST00000166256.2 |
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| CDS CAA 90 bp | TCAACCAAATATTTCTCAATGAGAGCCCAATCAATCTGTACTTCCTaGCTCTCCCGCTTCTGTGTGACGGACATCTTAATAAGATTCTTC | + |
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Preference number: 6 (lower is better) Translates to: STKYFSMRAQSICTS*LSRFCVTDILIRFF Trigger: GAAGAATCTTATTAAGATGTCCGTCACACAGAAGCGGGAGAGCAAGGAAGTACAGATTGATTGGGCTCTCATTGAGAAATATTTGGTTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076500.14 |
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| CDS TCA 72 bp | CAATATTCTCCATCTGTAACTTGTGCAGAGAGGACATaGCCTGGTTCTTCTTTAATATCAGTTGTTTATAGA | + |
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Preference number: 6 (lower is better) Translates to: QYSPSVTCAERT*PGSSLISVVYR Trigger: TCTATAAACAACTGATATTAAAGAAGAACCAGGTCATGTCCTCTCTGCACAAGTTACAGATGGAGAATATTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076500.14 ENSMUST00000166256.2 |
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