Pregenerated sensors for SPDYE4C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074812Ensembl transcript IDs: ENSMUST00000144559.8, ENSMUST00000155430.8, ENSMUST00000178601.5
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGCAGGGGTGGCTGTGCTaGAGGCCAGCACGCTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: GWSGAGSSAAPCSTTLLMQGWLC*RPARCP Trigger: AGGGCAGCGTGCTGGCCTCCAGCACAGCCACCCCTG...CATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CCA 90 bp | GCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGGGCAGCTTCAGGGGTaGCTGTGCTGGAGGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: AGVVRSWLKCSPMLHDPAGQLQG*LCWRPA Trigger: TGCTGGCCTCCAGCACAGCCACCCCTGAAGCTGCCC...AGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR GCA 90 bp | GTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCCCCTTCAGGGGTGGCTGTaGTGGAGGCCAGCACGCTGC | + |
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Preference number: 4 (lower is better) Translates to: VRSWLKCSPMLHDPADGPLQGWL*WRPARC Trigger: GCAGCGTGCTGGCCTCCAGCACAGCCACCCCTGAAG...GGGACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR TCA 90 bp | AGATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCGGGGAACTTGAGCTTTaGGGTGGCTCCAGGGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: RWQGWSGAGSSAAPCSTTGELEL*GGSRGS Trigger: GCTGCCCCTGGAGCCACCTCAAAGCTCAAGTTCCCC...GGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR TCA 90 bp | GGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCCCCAGGCCTGGGCACTGGAGGCAAGAGTaGCACAGACTTCTGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: GSSAAPCSTTLLMVPRPGHWRQE*HRLLDP Trigger: TGGATCCAGAAGTCTGTGTCACTCTTGCCTCCAGTG...CCCAGGCCTGGGGACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR TCA 90 bp | TGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCCCCTCCTGGGGAACTTaGGCTTTGAGGTGGCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: WSGAGSSAAPCSTTLLMVPSWGT*ALRWLQ Trigger: CTGGAGCCACCTCAAAGCTCAAGTTCCCCAGGAGGG...GACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR TCA 90 bp | CAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGCCTTTCGTTGGCTTCTaGAGCCGTGGTGTGGTATCT | + |
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Preference number: 4 (lower is better) Translates to: QGWSGAGSSAAPCSTTLLPFVGF*SRGVVS Trigger: AGATACCACACCACGGCTTCAGAAGCCAACGAAAGG...CAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR TCA 90 bp | GGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCCCCAGGCCTGGGTGGCACCTGTTTCCCTaGATCATTCTGCTTGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: GSSAAPCSTTLLMVPRPGWHLFP*IILLAG Trigger: TCCTGCAAGCAGAATGATTCAGGGAAACAGGTGCCA...CCCAGGCCTGGGGACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR TCA 90 bp | GGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCCCCAGGCCTGGGACTTGTCAGTCACCCTaGAGAAAATGTCCGCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: GSSAAPCSTTLLMVPRPGTCQSP*RKCPLP Trigger: TGGCAGCGGACATTTTCTTCAGGGTGACTGACAAGT...CCCAGGCCTGGGGACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR GCA 90 bp | CAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGCTGGTTCTGGATCTCTaGACACTGATCTGGCGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: QGWSGAGSSAAPCSTTLLLVLDL*TLIWRD Trigger: GTCACGCCAGATCAGTGTGCAGAGATCCAGAACCAG...CAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CCA 90 bp | TGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGTCTGAAGCCGTGGTGTaGTATCTGAGGCAACTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: WQGWSGAGSSAAPCSTTLSEAVV*YLRQLV Trigger: CACCAGTTGCCTCAGATACCACACCACGGCTTCAGA...CAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CCA 90 bp | TGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCAGTGCTGTGGGTTCTaGTTCTGGATCTCTGCACAC | + |
|
Preference number: 4 (lower is better) Translates to: WQGWSGAGSSAAPCSTTLQCCGF*FWISAH Trigger: GTGTGCAGAGATCCAGAACCAGAACCCACAGCACTG...CAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CCA 90 bp | TCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCCCCAGGCCTGGGAACCCAGACCCAGTGCTGTaGGTTCTGGTTCTGGATCTC | + |
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Preference number: 4 (lower is better) Translates to: SSAAPCSTTLLMVPRPGNPDPVL*VLVLDL Trigger: GAGATCCAGAACCAGAACCCACAGCACTGGGTCTGG...GTTCCCAGGCCTGGGGACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CCA 90 bp | GAGATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTCAGGGCGGTAGCTaGCTCTTCTCTTCTTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: EMAGVVRSWLKCSPMLHDPQGGS*LFSSCS Trigger: TGAACAAGAAGAGAAGAGCCAGCTACCGCCCTGAGG...GTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR GCA 90 bp | GTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCCCCTTGCCAGGTGTCTCTaGCCAGCAAGAATTGGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: VRSWLKCSPMLHDPADGPLARCL*PARIGR Trigger: TCTTCCAATTCTTGCTGGGCAGAGACACCTGGCAAG...GGGACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR GCA 90 bp | TGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCTCCTTGTATAAGCCTTaGCAGGTGTCTCTGCCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: WSGAGSSAAPCSTTLLMVSLYKP*QVSLPS Trigger: GCTGGGCAGAGACACCTGGCAAGGCTTATACAAGGA...GACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CCA 90 bp | TCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCCCCAGGCCTGGGAACGGCCCTTTTTCCTCTTaGATCTCTGCTCAGGGACAT | + |
|
Preference number: 4 (lower is better) Translates to: SSAAPCSTTLLMVPRPGNGPFSS*ISAQGH Trigger: ATGTCCCTGAGCAGAGATCCAAGAGGAAAAAGGGCC...GTTCCCAGGCCTGGGGACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR TCA 90 bp | GGAGATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGAAGTGTCCTTGTCTTGTaGGCCCTCTTCCTTTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: GDGRGGQELAQVQPHAPRSVLVL*ALFLLV Trigger: AACCAAAAGGAAGAGGGCTCACAAGACAAGGACACT...TCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR TCA 90 bp | GGGAGATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGAATCCATGGCTAGGATaGAATCCTTCTGCAGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GRWQGWSGAGSSAAPCSTNPWLG*NPSAAS Trigger: TGAAGCTGCAGAAGGATTTCATCCTAGCCATGGATT...CGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATCTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR GCA 90 bp | GATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCCTGAATCATTCTGCTTaGAGGACTCCTTTGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: DGRGGQELAQVQPHAPRPLNHSA*RTPLRR Trigger: TCTCCTCAAAGGAGTCCTGCAAGCAGAATGATTCAG...GGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR GCA 90 bp | GGAGATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGAGCCCTCTTGGATAGCTaGTTTGACATCCACAAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: GDGRGGQELAQVQPHAPRALLDS*FDIHKC Trigger: ACACTTGTGGATGTCAAAGCAGCTATCCAAGAGGGC...TCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CCA 90 bp | GGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGGAAGATGCTCCTCTTaGATATGGGGTCATCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: GWSGAGSSAAPCSTTLLMGRCSS*IWGHPL Trigger: AAGAGGATGACCCCATATCCAAGAGGAGCATCTTCC...CATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CCA 90 bp | ATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTCTGCCCAGCAAGAATTaGAAGATGCTCCTCTTGGAT | + |
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Preference number: 4 (lower is better) Translates to: MAGVVRSWLKCSPMLHDPLPSKN*KMLLLD Trigger: ATCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCAG...AGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR GCA 90 bp | GGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGCAAGAATTGGAAGATaGTCCTCTTGGATATGGGGT | + |
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Preference number: 4 (lower is better) Translates to: GWSGAGSSAAPCSTTLLMARIGR*SSWIWG Trigger: ACCCCATATCCAAGAGGAGCATCTTCCAATTCTTGC...CATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR TCA 90 bp | TGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGTCTTCTTGTTCAGTATaGGTTTCATCCCCTCTATAC | + |
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Preference number: 4 (lower is better) Translates to: WQGWSGAGSSAAPCSTTLSSCSV*VSSPLY Trigger: GTATAGAGGGGATGAAACTCATACTGAACAAGAAGA...CAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR GCA 90 bp | GTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTAGGATGAAATCCTTCTaGAGCTTCAGGAAATCCTTG | + |
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Preference number: 4 (lower is better) Translates to: VVRSWLKCSPMLHDPADGRMKSF*SFRKSL Trigger: CAAGGATTTCCTGAAGCTGCAGAAGGATTTCATCCT...ACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CCA 90 bp | GGAGATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGAAGTGACACAGACTTCTaGATCCATCTTGATATTGTC | + |
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Preference number: 4 (lower is better) Translates to: GDGRGGQELAQVQPHAPRSDTDF*IHLDIV Trigger: GACAATATCAAGATGGATCCAGAAGTCTGTGTCACT...TCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CAA 90 bp | TGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCCCCTCCTGGGGAACTaGAGCTTTGAGGTGGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: WQGWSGAGSSAAPCSTTLPLLGN*SFEVAP Trigger: TGGAGCCACCTCAAAGCTCAAGTTCCCCAGGAGGGG...CAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CAA 90 bp | GATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGGCCCTTTTTCCTCTaGGATCTCTGCTCAGGGACA | + |
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Preference number: 5 (lower is better) Translates to: DGRGGQELAQVQPHAPRPWPFFL*DLCSGT Trigger: TGTCCCTGAGCAGAGATCCAAGAGGAAAAAGGGCCA...GGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CAA 90 bp | GAGATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACGCTTGCAGGACTCCTTaGAGGAGACAGGTGACATCT | + |
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Preference number: 5 (lower is better) Translates to: EMAGVVRSWLKCSPMLHDACRTP*RRQVTS Trigger: AGATGTCACCTGTCTCCTCAAAGGAGTCCTGCAAGC...GTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CAA 90 bp | ATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTCATCCACAAGTGTCCTaGTCTTGTGAGCCCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: MAGVVRSWLKCSPMLHDPHPQVS*SCEPSS Trigger: GGAAGAGGGCTCACAAGACAAGGACACTTGTGGATG...AGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CAA 90 bp | CTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCCCCAGGCCTGGGAATCTTTTGACCTTTCGTaGGCTTCTGAAGCCGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: LKCSPMLHDPADGPQAWESFDLS*ASEAVV Trigger: CACCACGGCTTCAGAAGCCAACGAAAGGTCAAAAGA...TTCCCAGGCCTGGGGACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CAA 90 bp | TCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTCCCCAGGCCTGGGAACCCTGAATCATTCTGCTaGCAGGACTCCTTTGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: SSAAPCSTTLLMVPRPGNPESFC*QDSFEE Trigger: CTCCTCAAAGGAGTCCTGCAAGCAGAATGATTCAGG...GTTCCCAGGCCTGGGGACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CAA 90 bp | GGAGATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGATCTGCCCAGCAAGAATaGGAAGATGCTCCTCTTGGA | + |
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Preference number: 5 (lower is better) Translates to: GDGRGGQELAQVQPHAPRSAQQE*EDAPLG Trigger: TCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCAGA...TCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS GCA 90 bp | AGGGGTGGCTGTGCTGGAGGCCAGCACGCTGCCCTCTTGGATAGCTaGTTTGACATCCACAAGTGTCCTTGTCTTGTGAGCCCTCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: RGGCAGGQHAALLDS*FDIHKCPCLVSPLP Trigger: AGGAAGAGGGCTCACAAGACAAGGACACTTGTGGATGTCAAAGCAGCTATCCAAGAGGGCAGCGTGCTGGCCTCCAGCACAGCCACCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS GCA 90 bp | CTTGTGAGCCCTCTTCCTTTTGGTTCGCTGCACAGGGACATCCCCTaGCGAGGCATCACTGGAGGCAAGAGTGACACAGACTTCTGGATC | + |
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Preference number: 5 (lower is better) Translates to: LVSPLPFGSLHRDIP*RGITGGKSDTDFWI Trigger: GATCCAGAAGTCTGTGTCACTCTTGCCTCCAGTGATGCCTCGGCAGGGGATGTCCCTGTGCAGCGAACCAAAAGGAAGAGGGCTCACAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CAA 90 bp | ATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTTCTTGGATAGCTGCTTaGACATCCACAAGTGTCCTT | + |
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Preference number: 5 (lower is better) Translates to: MAGVVRSWLKCSPMLHDPSWIAA*TSTSVL Trigger: AAGGACACTTGTGGATGTCAAAGCAGCTATCCAAGA...AGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CAA 90 bp | GTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGCTGATGGTAGCTTCAGGAAATCCTaGTATAAGCCTTGCCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: VVRSWLKCSPMLHDPADGSFRKS*YKPCQV Trigger: CACCTGGCAAGGCTTATACAAGGATTTCCTGAAGCT...ACCATCAGCAGGGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS-3UTR CAA 90 bp | AGATGGCAGGGGTGGTCAGGAGCTGGCTCAAGTGCAGCCCCATGCTCCACGACCCTGGCTCTTCTCTTCTaGTTCAGTATGAGTTTCATC | + |
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Preference number: 5 (lower is better) Translates to: RWQGWSGAGSSAAPCSTTLALLF*FSMSFI Trigger: GATGAAACTCATACTGAACAAGAAGAGAAGAGCCAG...GGTCGTGGAGCATGGGGCTGCACTTGAGCCAGCTCCTGACCACCCCTGCCATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS TCA 90 bp | CCCTCTTGGATAGCTGCTTTGACATCCACAAGTGTCCTTGTCTTGTaGGCCCTCTTCCTTTTGGTTCGCTGCACAGGGACATCCCCTGCC | + |
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Preference number: 5 (lower is better) Translates to: PSWIAALTSTSVLVL*ALFLLVRCTGTSPA Trigger: GGCAGGGGATGTCCCTGTGCAGCGAACCAAAAGGAAGAGGGCTCACAAGACAAGGACACTTGTGGATGTCAAAGCAGCTATCCAAGAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS GCA 90 bp | TCTTTGGCCCTTTTTCCTCTTGGATCTCTGCTCAGGGACATCCCCTaGAGAGCCATCACTGGAAGCCAGAATACTGGTGACCTGTGGAGC | + |
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Preference number: 5 (lower is better) Translates to: SLALFPLGSLLRDIP*RAITGSQNTGDLWS Trigger: GCTCCACAGGTCACCAGTATTCTGGCTTCCAGTGATGGCTCTGCAGGGGATGTCCCTGAGCAGAGATCCAAGAGGAAAAAGGGCCAAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000155430.8 |
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| CDS CCA 90 bp | AGGTGTCTCTGCCCAGCAAGAATTGGAAGATGCTCCTCTTGGATATaGGGTCATCCTCTTCCATGTCACAGGCGATATAGAGGGCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: RCLCPARIGRCSSWI*GHPLPCHRRYRGPG Trigger: TCCTGGCCCTCTATATCGCCTGTGACATGGAAGAGGATGACCCCATATCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCAGAGACACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS CCA 90 bp | CTTGCCAGGTGTCTCTGCCCAGCAAGAATTGGAAGATGCTCCTCTTaGATATGGGGTCATCCTCTTCCATGTCACAGGCGATATAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: LARCLCPARIGRCSS*IWGHPLPCHRRYRG Trigger: CCCTCTATATCGCCTGTGACATGGAAGAGGATGACCCCATATCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCAGAGACACCTGGCAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS GCA 90 bp | TGTATAAGCCTTGCCAGGTGTCTCTGCCCAGCAAGAATTGGAAGATaGTCCTCTTGGATATGGGGTCATCCTCTTCCATGTCACAGGCGA | + |
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Preference number: 5 (lower is better) Translates to: CISLARCLCPARIGR*SSWIWGHPLPCHRR Trigger: TCGCCTGTGACATGGAAGAGGATGACCCCATATCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCAGAGACACCTGGCAAGGCTTATACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS GCA 90 bp | TCTGCAGCTTCAGGAAATCCTTGTATAAGCCTTGCCAGGTGTCTCTaGCCAGCAAGAATTGGAAGATGCTCCTCTTGGATATGGGGTCAT | + |
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Preference number: 5 (lower is better) Translates to: SAASGNPCISLARCL*PARIGRCSSWIWGH Trigger: ATGACCCCATATCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCAGAGACACCTGGCAAGGCTTATACAAGGATTTCCTGAAGCTGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS CCA 72 bp | GGGGTGGCTGTGCTGGAGGCCAGCACGCTGCCCTCTTaGATAGCTGCTTTGACATCCACAAGTGTCCTTGTC | + |
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Preference number: 6 (lower is better) Translates to: GVAVLEASTLPS*IAALTSTSVLV Trigger: GACAAGGACACTTGTGGATGTCAAAGCAGCTATCCAAGAGGGCAGCGTGCTGGCCTCCAGCACAGCCACCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS GCA 72 bp | CCTCTTCCTTTTGGTTCGCTGCACAGGGACATCCCCTaGCGAGGCATCACTGGAGGCAAGAGTGACACAGAC | + |
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Preference number: 6 (lower is better) Translates to: PLPFGSLHRDIP*RGITGGKSDTD Trigger: GTCTGTGTCACTCTTGCCTCCAGTGATGCCTCGGCAGGGGATGTCCCTGTGCAGCGAACCAAAAGGAAGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS CAA 72 bp | AGGGGTGGCTGTGCTGGAGGCCAGCACGCTGCCCTCTaGGATAGCTGCTTTGACATCCACAAGTGTCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: RGGCAGGQHAAL*DSCFDIHKCPC Trigger: ACAAGGACACTTGTGGATGTCAAAGCAGCTATCCAAGAGGGCAGCGTGCTGGCCTCCAGCACAGCCACCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS CCA 72 bp | CCACAAGTGTCCTTGTCTTGTGAGCCCTCTTCCTTTTaGTTCGCTGCACAGGGACATCCCCTGCCGAGGCAT | + |
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Preference number: 6 (lower is better) Translates to: PQVSLSCEPSSF*FAAQGHPLPRH Trigger: ATGCCTCGGCAGGGGATGTCCCTGTGCAGCGAACCAAAAGGAAGAGGGCTCACAAGACAAGGACACTTGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS GCA 72 bp | TGTGCTGGAGGCCAGCACGCTGCCCTCTTGGATAGCTaGTTTGACATCCACAAGTGTCCTTGTCTTGTGAGC | + |
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Preference number: 6 (lower is better) Translates to: CAGGQHAALLDS*FDIHKCPCLVS Trigger: GCTCACAAGACAAGGACACTTGTGGATGTCAAAGCAGCTATCCAAGAGGGCAGCGTGCTGGCCTCCAGCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144559.8 |
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| CDS CAA 72 bp | CTGTCCGCTGGCACCTGTTTCCCTGAATCATTCTGCTaGCAGGACTCCTTTGAGGAGACAGGTGACATCTCG | + |
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Preference number: 6 (lower is better) Translates to: LSAGTCFPESFC*QDSFEETGDIS Trigger: CGAGATGTCACCTGTCTCCTCAAAGGAGTCCTGCAAGCAGAATGATTCAGGGAAACAGGTGCCAGCGGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000155430.8 |
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| CDS GCA 72 bp | ACACTGTCCGCTGGCACCTGTTTCCCTGAATCATTCTaGTTGCAGGACTCCTTTGAGGAGACAGGTGACATC | + |
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Preference number: 6 (lower is better) Translates to: TLSAGTCFPESF*LQDSFEETGDI Trigger: GATGTCACCTGTCTCCTCAAAGGAGTCCTGCAAGCAGAATGATTCAGGGAAACAGGTGCCAGCGGACAGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000155430.8 |
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| CDS GCA 72 bp | CTTTTTCCTCTTGGATCTCTGCTCAGGGACATCCCCTaGAGAGCCATCACTGGAAGCCAGAATACTGGTGAC | + |
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Preference number: 6 (lower is better) Translates to: LFPLGSLLRDIP*RAITGSQNTGD Trigger: GTCACCAGTATTCTGGCTTCCAGTGATGGCTCTGCAGGGGATGTCCCTGAGCAGAGATCCAAGAGGAAAAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000155430.8 |
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| CDS CAA 72 bp | GTGTCTCTGCCCAGCAAGAATTGGAAGATGCTCCTCTaGGATATGGGGTCATCCTCTTCCATGTCACAGGCG | + |
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Preference number: 6 (lower is better) Translates to: VSLPSKNWKMLL*DMGSSSSMSQA Trigger: CGCCTGTGACATGGAAGAGGATGACCCCATATCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCAGAGACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS CAA 90 bp | AAGCAAACACTGTCCGCTGGCACCTGTTTCCCTGAATCATTCTGCTaGCAGGACTCCTTTGAGGAGACAGGTGACATCTCGGATCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: KQTLSAGTCFPESFC*QDSFEETGDISDLL Trigger: CAGAAGATCCGAGATGTCACCTGTCTCCTCAAAGGAGTCCTGCAAGCAGAATGATTCAGGGAAACAGGTGCCAGCGGACAGTGTTTGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000155430.8 |
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| CDS CCA 72 bp | TGTCTCTGCCCAGCAAGAATTGGAAGATGCTCCTCTTaGATATGGGGTCATCCTCTTCCATGTCACAGGCGA | + |
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Preference number: 6 (lower is better) Translates to: CLCPARIGRCSS*IWGHPLPCHRR Trigger: TCGCCTGTGACATGGAAGAGGATGACCCCATATCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCAGAGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS TCA 72 bp | CAGGGCGGTAGCTGGCTCTTCTCTTCTTGTTCAGTATaGGTTTCATCCCCTCTATACGGTTCACAGCCCATA | + |
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Preference number: 6 (lower is better) Translates to: QGGSWLFSSCSV*VSSPLYGSQPI Trigger: TATGGGCTGTGAACCGTATAGAGGGGATGAAACTCATACTGAACAAGAAGAGAAGAGCCAGCTACCGCCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS CCA 72 bp | TATAAGCCTTGCCAGGTGTCTCTGCCCAGCAAGAATTaGAAGATGCTCCTCTTGGATATGGGGTCATCCTCT | + |
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Preference number: 6 (lower is better) Translates to: YKPCQVSLPSKN*KMLLLDMGSSS Trigger: AGAGGATGACCCCATATCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCAGAGACACCTGGCAAGGCTTATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS CAA 72 bp | CCTGTTTCCCTGAATCATTCTGCTTGCAGGACTCCTTaGAGGAGACAGGTGACATCTCGGATCTTCTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: PVSLNHSACRTP*RRQVTSRIFCL Trigger: CAGACAGAAGATCCGAGATGTCACCTGTCTCCTCAAAGGAGTCCTGCAAGCAGAATGATTCAGGGAAACAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000155430.8 |
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| CDS GCA 72 bp | CAGATACTTGTCAGTCACCCTGAAGAAAATGTCCGCTaGCAAGAAATTCTGGACCACAGGATCCTCCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: QILVSHPEENVR*QEILDHRILQK Trigger: CTTCTGGAGGATCCTGTGGTCCAGAATTTCTTGGCAGCGGACATTTTCTTCAGGGTGACTGACAAGTATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS GCA 72 bp | TCCTTCTGCAGCTTCAGGAAATCCTTGTATAAGCCTTaGCAGGTGTCTCTGCCCAGCAAGAATTGGAAGATG | + |
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Preference number: 6 (lower is better) Translates to: SFCSFRKSLYKP*QVSLPSKNWKM Trigger: CATCTTCCAATTCTTGCTGGGCAGAGACACCTGGCAAGGCTTATACAAGGATTTCCTGAAGCTGCAGAAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS CCA 72 bp | TGCCCAGCAAGAATTGGAAGATGCTCCTCTTGGATATaGGGTCATCCTCTTCCATGTCACAGGCGATATAGA | + |
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Preference number: 6 (lower is better) Translates to: CPARIGRCSSWI*GHPLPCHRRYR Trigger: TCTATATCGCCTGTGACATGGAAGAGGATGACCCCATATCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS CAA 72 bp | CGACCAAAATACTCCACCACCATAGACAGCAGATACTaGTCAGTCACCCTGAAGAAAATGTCCGCTGCCAAG | + |
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Preference number: 6 (lower is better) Translates to: RPKYSTTIDSRY*SVTLKKMSAAK Trigger: CTTGGCAGCGGACATTTTCTTCAGGGTGACTGACAAGTATCTGCTGTCTATGGTGGTGGAGTATTTTGGTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS CAA 90 bp | AGCCCAACTCGACCAAAATACTCCACCACCATAGACAGCAGATACTaGTCAGTCACCCTGAAGAAAATGTCCGCTGCCAAGAAATTCTGG | + |
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Preference number: 6 (lower is better) Translates to: SPTRPKYSTTIDSRY*SVTLKKMSAAKKFW Trigger: CCAGAATTTCTTGGCAGCGGACATTTTCTTCAGGGTGACTGACAAGTATCTGCTGTCTATGGTGGTGGAGTATTTTGGTCGAGTTGGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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| CDS GCA 72 bp | TCAGGAAATCCTTGTATAAGCCTTGCCAGGTGTCTCTaGCCAGCAAGAATTGGAAGATGCTCCTCTTGGATA | + |
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Preference number: 6 (lower is better) Translates to: SGNPCISLARCL*PARIGRCSSWI Trigger: TATCCAAGAGGAGCATCTTCCAATTCTTGCTGGGCAGAGACACCTGGCAAGGCTTATACAAGGATTTCCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000144559.8 ENSMUST00000178601.5 |
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