Pregenerated sensors for SPDYE4B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029586Ensembl transcript IDs: ENSMUST00000031574.10, ENSMUST00000159781.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTGGGAGGTGGGGACCGAGGACATTCGGGATAACATTTAGATGGTaGCTCTGGAAAGCATGGAGCCTGGAGGAATCCTGGTTTCTCATG | + |
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Preference number: 1 (lower is better) Translates to: VGRWGPRTFGITFRW*LWKAWSLEESWFLM Trigger: CATGAGAAACCAGGATTCCTCCAGGCTCCATGCTTTCCAGAGGCACCATCTAAATGTTATCCCGAATGTCCTCGGTCCCCACCTCCCAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| 3UTR CCA 90 bp | ACATTTAGATGGTGCCTCTGGAAAGCATGGAGCCTGGAGGAATCCTaGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCT | + |
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Preference number: 1 (lower is better) Translates to: TFRWCLWKAWSLEES*FLMASPETPTRVPA Trigger: AGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTCCTCCAGGCTCCATGCTTTCCAGAGGCACCATCTAAATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| 3UTR-3UTR CCA 90 bp | GAATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCCCCTTCTGGAAGAGTCTaGGTTCTTCTAGGTTTCCCA | + |
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Preference number: 2 (lower is better) Translates to: ESWFLMASPETPTRVPAPPSGRV*VLLGFP Trigger: TGGGAAACCTAGAAGAACCCAGACTCTTCCAGAAGG...GGGAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| 3UTR-3UTR CCA 90 bp | GAAAGCATGGAGCCTGGAGGAATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCCCATCCCACTCCTTCTaGAAGAGTCTGGGTTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: ESMEPGGILVSHGLSRDSPSHSF*KSLGSS Trigger: AGAAGAACCCAGACTCTTCCAGAAGGAGTGGGATGG...GGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTCCTCCAGGCTCCATGCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| 3UTR-3UTR CCA 90 bp | AAGCTTTCTATTACAAACATATGGCTCAAAGGCTATACTTTGAAGGTAGTTCCCGGAAAGCATGGAGCCTaGAGGAATCCTGGTTTCTCA | + |
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Preference number: 2 (lower is better) Translates to: KLSITNIWLKGYTLKVVPGKHGA*RNPGFS Trigger: TGAGAAACCAGGATTCCTCCAGGCTCCATGCTTTCC...GGGAACTACCTTCAAAGTATAGCCTTTGAGCCATATGTTTGTAATAGAAAGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| 3UTR-3UTR CCA 90 bp | CACAAAATCAGGAGAGCTGCCTGTTTTCAAATCCACAATATTTCAAACCTGTTCCTTCTAGGTTTCCCATaGAAGATAGTCAGTCCTCTC | + |
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Preference number: 2 (lower is better) Translates to: HKIRRAACFQIHNISNLFLLGFP*KIVSPL Trigger: GAGAGGACTGACTATCTTCCATGGGAAACCTAGAAG...GAACAGGTTTGAAATATTGTGGATTTGAAAACAGGCAGCTCTCCTGATTTTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| 3UTR-3UTR GCA 90 bp | TCAAAATACATCTCACCTTTAAATCAACAGACACAAGTGTTGCTTCTTCACGTCCAAAATCAGGAGAGCTaGCTGTTTTCAAATCCACAA | + |
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Preference number: 2 (lower is better) Translates to: SKYISPLNQQTQVLLLHVQNQES*LFSNPQ Trigger: TTGTGGATTTGAAAACAGGCAGCTCTCCTGATTTTG...GACGTGAAGAAGCAACACTTGTGTCTGTTGATTTAAAGGTGAGATGTATTTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| 3UTR CCA 72 bp | GGGCACACACCACCCTTAATCCCAGCACTGAGGAGTTaGAGGAAGGTGGATCTCTGTAAGTCTGGGGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: GHTPPLIPALRS*RKVDLCKSGAR Trigger: CCTGGCCCCAGACTTACAGAGATCCACCTTCCTCCAACTCCTCAGTGCTGGGATTAAGGGTGGTGTGTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| 3UTR CCA 72 bp | GGAAAGCATGGAGCCTGGAGGAATCCTGGTTTCTCATaGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: GKHGAWRNPGFS*PLQRLLQGSQL Trigger: GAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTCCTCCAGGCTCCATGCTTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| 3UTR CCA 72 bp | TGGTGCCTCTGGAAAGCATGGAGCCTGGAGGAATCCTaGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGG | + |
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Preference number: 3 (lower is better) Translates to: WCLWKAWSLEES*FLMASPETPTR Trigger: CCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTCCTCCAGGCTCCATGCTTTCCAGAGGCACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| 3UTR CCA 72 bp | CCGAGGACATTCGGGATAACATTTAGATGGTGCCTCTaGAAAGCATGGAGCCTGGAGGAATCCTGGTTTCTC | + |
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Preference number: 3 (lower is better) Translates to: PRTFGITFRWCL*KAWSLEESWFL Trigger: GAGAAACCAGGATTCCTCCAGGCTCCATGCTTTCCAGAGGCACCATCTAAATGTTATCCCGAATGTCCTCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | CATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCCAGGAGCGCAGTGTGATGGAGGCTGGGGAGTaGCTTCCACCCTTGGTTGAC | + |
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Preference number: 4 (lower is better) Translates to: HGLSRDSYKGPSSQERSVMEAGE*LPPLVD Trigger: GTCAACCAAGGGTGGAAGCCACTCCCCAGCCTCCAT...CACACTGCGCTCCTGGGAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | CAGAGACTCCTACAAGGGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCAGGCACAGGGATCTATaGCAGGCGGATGGCCTCGAG | + |
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Preference number: 4 (lower is better) Translates to: QRLLQGSQLPGAQCGDSIRHRDL*QADGLE Trigger: CTCGAGGCCATCCGCCTGCCATAGATCCCTGTGCCT...GATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACCCTTGTAGGAGTCTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR TCA 90 bp | GGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCTTCTGGAAGCCTCGAGCAACTTGGTaGAGACCTTGTGGTGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: GPSSQERSVVIPSHSFWKPRATW*RPCGVQ Trigger: CTGAACACCACAAGGTCTTCACCAAGTTGCTCGAGG...CTTCCAGAAGGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR TCA 90 bp | CAGAGACTCCTACAAGGGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCAGGAGGTACTTGTCTaGCACCCGCAGCATCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: QRLLQGSQLPGAQCGDSIQEVLV*HPQHLV Trigger: GACAAGATGCTGCGGGTGTCAGACAAGTACCTCCTG...GATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACCCTTGTAGGAGTCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR GCA 90 bp | TCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCTTCTGGAAGAGGACACACATTGCCTCTaGAGCGTCATCCTGAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: SQLPGAQCGDSIPLLLEEDTHCL*SVILSP Trigger: TGGGCTCAGGATGACGCTGCAGAGGCAATGTGTGTC...CTCTTCCAGAAGGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAGCTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR GCA 90 bp | CAGAGACTCCTACAAGGGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCGACACACATTGCCTCTaGAGCGTCATCCTGAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: QRLLQGSQLPGAQCGDSIDTHCL*SVILSP Trigger: TGGGCTCAGGATGACGCTGCAGAGGCAATGTGTGTC...GATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACCCTTGTAGGAGTCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR GCA 90 bp | AATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCCATGGATGGGCCTGTACTaGCAGGAGAAGAGCCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: NPGFSWPLQRLLQGSQLPWMGLY*QEKSPA Trigger: CGCTGGGCTCTTCTCCTGGCAGTACAGGCCCATCCA...TGGGAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | GGAGGAATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCATGGAGGCTGGGGAGTaGCTTCCACCCTTGGTTGAC | + |
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Preference number: 4 (lower is better) Translates to: GGILVSHGLSRDSYKGPSMEAGE*LPPLVD Trigger: GTCAACCAAGGGTGGAAGCCACTCCCCAGCCTCCAT...GCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTCCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | TTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCCAGGAGCGCACTTTTGGATGCTGGATaGAGGCTGGGGAGTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: FLMASPETPTRVPAPRSALLDAG*RLGSGF Trigger: GAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAG...TGCGCTCCTGGGAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | GGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCTTCTGGAAGTCCCTCTTCCTCTTTTaGATGCTGGATGGAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: GPSSQERSVVIPSHSFWKSLFLF*MLDGGW Trigger: CCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGA...CTTCCAGAAGGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | CAGAGACTCCTACAAGGGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCGCAGTTTGTGGAACATaGGGCGCTGGGCATAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: QRLLQGSQLPGAQCGDSIAVCGT*GAGHSS Trigger: AGAGCTATGCCCAGCGCCCCATGTTCCACAAACTGC...GATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACCCTTGTAGGAGTCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | GAGGAATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTAGGCACAGGGATCTATaGCAGGCGGATGGCCTCGAG | + |
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Preference number: 4 (lower is better) Translates to: EESWFLMASPETPTRVPARHRDL*QADGLE Trigger: CTCGAGGCCATCCGCCTGCCATAGATCCCTGTGCCT...AGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | AGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCTTCTGGAAGAGTCTGGCAGTTTGTGGAACATaGGGCGCTGGGCATAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SSQERSVVIPSHSFWKSLAVCGT*GAGHSS Trigger: AGAGCTATGCCCAGCGCCCCATGTTCCACAAACTGC...CAGACTCTTCCAGAAGGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR GCA 90 bp | AATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCCATCTTCCTCTTTTGGATaGTGGATGGAGGCTGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: NPGFSWPLQRLLQGSQLPSSSFG*WMEAGE Trigger: CTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGA...TGGGAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR TCA 90 bp | CCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCCTAATGTTGGCCCTCGAGCAACTTGGTaGAGACCTTGTGGTGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: PMEDSQSSLLSPSSPNVGPRATW*RPCGVQ Trigger: CTGAACACCACAAGGTCTTCACCAAGTTGCTCGAGG...GCCAACATTAGGACTGCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR GCA 90 bp | AATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCCAACTGTAGACACACATTaGCTCTGCAGCGTCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: NPGFSWPLQRLLQGSQLPTVDTH*LCSVIL Trigger: CAGGATGACGCTGCAGAGGCAATGTGTGTCTACAGT...TGGGAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR GCA 90 bp | CACTCCTTCTGGAAGAGTCTGGGTTCTTCTAGGTTTCCCATGGAAGATAGTCAGTGGATGGGCCTGTACTaGCAGGAGAAGAGCCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: HSFWKSLGSSRFPMEDSQWMGLY*QEKSPA Trigger: CGCTGGGCTCTTCTCCTGGCAGTACAGGCCCATCCA...CTGACTATCTTCCATGGGAAACCTAGAAGAACCCAGACTCTTCCAGAAGGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | GGAGGAATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCAGTGGCTTCCACCCTTaGTTGACTGAAGAAAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: GGILVSHGLSRDSYKGPSSGFHP*LTEESR Trigger: TCTGCTTTCTTCAGTCAACCAAGGGTGGAAGCCACT...GCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTCCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | GGAATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCTTGGTGAAGACCTTGTaGTGTTCAGGCCTCACTGTA | + |
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Preference number: 4 (lower is better) Translates to: GILVSHGLSRDSYKGPSSLVKTL*CSGLTV Trigger: TACAGTGAGGCCTGAACACCACAAGGTCTTCACCAA...GGAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR TCA 90 bp | GGAATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCGCTTCCACCCTTGGTTaGCTGAAGAAAGCAGATTTA | + |
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Preference number: 4 (lower is better) Translates to: GILVSHGLSRDSYKGPSSASTLG*LKKADL Trigger: TAAATCTGCTTTCTTCAGTCAACCAAGGGTGGAAGC...GGAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR TCA 90 bp | CAAGGCATAGGGGCACACACCACCCTTAATCCCAGCACTGAGGAGTTGGAGGAAGCTTCCACCCTTGGTTaGCTGAAGAAAGCAGATTTA | + |
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Preference number: 4 (lower is better) Translates to: QGIGAHTTLNPSTEELEEASTLG*LKKADL Trigger: TAAATCTGCTTTCTTCAGTCAACCAAGGGTGGAAGC...TTCCTCCAACTCCTCAGTGCTGGGATTAAGGGTGGTGTGTGCCCCTATGCCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| CDS-3UTR CCA 90 bp | AGGTTTCCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCCTAATTCCCTCTTCCTCTTTTaGATGCTGGATGGAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RFPMEDSQSSLLSPSSPNSLFLF*MLDGGW Trigger: CCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGA...ATTAGGACTGCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGGAAACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR GCA 90 bp | TCCCACTCCTTCTGGAAGAGTCTGGGTTCTTCTAGGTTTCCCATGGAAGATAGTTCTTCCTCTTTTGGATaGTGGATGGAGGCTGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: SHSFWKSLGSSRFPMEDSSSSFG*WMEAGE Trigger: CTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGA...ACTATCTTCCATGGGAAACCTAGAAGAACCCAGACTCTTCCAGAAGGAGTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | TTTCCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCCTAATGTTTTGGTGAAGACCTTGTaGTGTTCAGGCCTCACTGTA | + |
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Preference number: 4 (lower is better) Translates to: FPMEDSQSSLLSPSSPNVLVKTL*CSGLTV Trigger: TACAGTGAGGCCTGAACACCACAAGGTCTTCACCAA...AACATTAGGACTGCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CCA 90 bp | TCCATCACAAAATCAGGAGAGCTGCCTGTTTTCAAATCCACAATATTTCAAACCCTTTTGGATGCTGGATaGAGGCTGGGGAGTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: SITKSGELPVFKSTIFQTLLDAG*RLGSGF Trigger: GAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAG...GGTTTGAAATATTGTGGATTTGAAAACAGGCAGCTCTCCTGATTTTGTGATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| CDS-3UTR CCA 90 bp | CTTTCAAAATACATCTCACCTTTAAATCAACAGACACAAGTGTTGCTTCTTCACATGCTGGATGGAGGCTaGGGAGTGGCTTCCACCCTT | + |
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Preference number: 4 (lower is better) Translates to: LSKYISPLNQQTQVLLLHMLDGG*GVASTL Trigger: AAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCAT...GTGAAGAAGCAACACTTGTGTCTGTTGATTTAAAGGTGAGATGTATTTTGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| CDS-3UTR CCA 90 bp | ACATATATGAATGTTATCCATCACAAAATCAGGAGAGCTGCCTGTTTTCAAATCAGTGGCTTCCACCCTTaGTTGACTGAAGAAAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: TYMNVIHHKIRRAACFQISGFHP*LTEESR Trigger: TCTGCTTTCTTCAGTCAACCAAGGGTGGAAGCCACT...GATTTGAAAACAGGCAGCTCTCCTGATTTTGTGATGGATAACATTCATATATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| CDS-3UTR CAA 90 bp | AAGGGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCTTCTGGGGCTTCCACCCTTGGTaGACTGAAGAAAGCAGATTT | + |
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Preference number: 5 (lower is better) Translates to: KGPSSQERSVVIPSHSFWGFHPW*TEESRF Trigger: AAATCTGCTTTCTTCAGTCAACCAAGGGTGGAAGCC...CCAGAAGGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CAA 90 bp | TCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCTTCTGGAAGAGTCTGGGTGACACCCGCAGCATCTaGTCCCAGGTCAGGAATTTT | + |
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Preference number: 5 (lower is better) Translates to: SQERSVVIPSHSFWKSLGDTRSI*SQVRNF Trigger: AAAATTCCTGACCTGGGACAAGATGCTGCGGGTGTC...ACCCAGACTCTTCCAGAAGGAGTGGGATGGAATCACCACACTGCGCTCCTGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CAA 90 bp | TCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCTTCTGGAAGAGTCTGGGTATAGACAGGAGGTACTaGTCTGACACCCGCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: SQERSVVIPSHSFWKSLGIDRRY*SDTRSI Trigger: GATGCTGCGGGTGTCAGACAAGTACCTCCTGTCTAT...ACCCAGACTCTTCCAGAAGGAGTGGGATGGAATCACCACACTGCGCTCCTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS TCA 90 bp | TTTTGGATGCTGGATGGAGGCTGGGGAGTGGCTTCCACCCTTGGTTaGCTGAAGAAAGCAGATTTAGACGGCATGGTGCACAGAGGCGAG | + |
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Preference number: 5 (lower is better) Translates to: FWMLDGGWGVASTLG*LKKADLDGMVHRGE Trigger: CTCGCCTCTGTGCACCATGCCGTCTAAATCTGCTTTCTTCAGTCAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CAA 90 bp | GAATCCTGGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCCGGCTTCCACCCTTGGTaGACTGAAGAAAGCAGATTT | + |
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Preference number: 5 (lower is better) Translates to: ESWFLMASPETPTRVPAPGFHPW*TEESRF Trigger: AAATCTGCTTTCTTCAGTCAACCAAGGGTGGAAGCC...GGGAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAACCAGGATTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CAA 90 bp | AGGTTTCCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCCTAATGTCCCTCTTCCTCTTTaGGATGCTGGATGGAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: RFPMEDSQSSLLSPSSPNVPLPL*DAGWRL Trigger: CAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGAC...ATTAGGACTGCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGGAAACCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CAA 90 bp | AGGTTTCCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCCTAATATAGACAGGAGGTACTaGTCTGACACCCGCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: RFPMEDSQSSLLSPSSPNIDRRY*SDTRSI Trigger: GATGCTGCGGGTGTCAGACAAGTACCTCCTGTCTAT...ATTAGGACTGCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGGAAACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS-3UTR CAA 90 bp | TCCATCACAAAATCAGGAGAGCTGCCTGTTTTCAAATCCACAATATTTCAAACCGTCCCTCTTCCTCTTTaGGATGCTGGATGGAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: SITKSGELPVFKSTIFQTVPLPL*DAGWRL Trigger: CAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGAC...GGTTTGAAATATTGTGGATTTGAAAACAGGCAGCTCTCCTGATTTTGTGATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| CDS-3UTR CAA 90 bp | TCAAAATACATCTCACCTTTAAATCAACAGACACAAGTGTTGCTTCTTCACGTCGACACCCGCAGCATCTaGTCCCAGGTCAGGAATTTT | + |
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Preference number: 5 (lower is better) Translates to: SKYISPLNQQTQVLLLHVDTRSI*SQVRNF Trigger: AAAATTCCTGACCTGGGACAAGATGCTGCGGGTGTC...GACGTGAAGAAGCAACACTTGTGTCTGTTGATTTAAAGGTGAGATGTATTTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| CDS-3UTR CAA 90 bp | CTTTCAAAATACATCTCACCTTTAAATCAACAGACACAAGTGTTGCTTCTTCACCACTGTAGACACACATaGCCTCTGCAGCGTCATCCT | + |
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Preference number: 5 (lower is better) Translates to: LSKYISPLNQQTQVLLLHHCRHT*PLQRHP Trigger: AGGATGACGCTGCAGAGGCAATGTGTGTCTACAGTG...GTGAAGAAGCAACACTTGTGTCTGTTGATTTAAAGGTGAGATGTATTTTGAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031574.10 |
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| CDS CCA 72 bp | CTGAGCCCACACGGCGTCTCCACTGACCACACCGGCTaGGGATCAGGTTCAAATAGCTCTGCCAGGTCATCC | + |
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Preference number: 6 (lower is better) Translates to: LSPHGVSTDHTG*GSGSNSSARSS Trigger: GGATGACCTGGCAGAGCTATTTGAACCTGATCCCCAGCCGGTGTGGTCAGTGGAGACGCCGTGTGGGCTCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS TCA 72 bp | CCTGGGACACCCAGATCCTCCAGCCCATGGACCGAATaGACTGGAAGCGCAGTTTGTGGAACATGGGGCGCT | + |
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Preference number: 6 (lower is better) Translates to: PGTPRSSSPWTE*TGSAVCGTWGA Trigger: AGCGCCCCATGTTCCACAAACTGCGCTTCCAGTTCATTCGGTCCATGGGCTGGAGGATCTGGGTGTCCCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS CAA 72 bp | GCTGGATGGAGGCTGGGGAGTGGCTTCCACCCTTGGTaGACTGAAGAAAGCAGATTTAGACGGCATGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: AGWRLGSGFHPW*TEESRFRRHGA Trigger: TGCACCATGCCGTCTAAATCTGCTTTCTTCAGTCAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS CAA 90 bp | CTTTTGGATGCTGGATGGAGGCTGGGGAGTGGCTTCCACCCTTGGTaGACTGAAGAAAGCAGATTTAGACGGCATGGTGCACAGAGGCGA | + |
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Preference number: 6 (lower is better) Translates to: LLDAGWRLGSGFHPW*TEESRFRRHGAQRR Trigger: TCGCCTCTGTGCACCATGCCGTCTAAATCTGCTTTCTTCAGTCAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS CCA 72 bp | GATGCTGGATGGAGGCTGGGGAGTGGCTTCCACCCTTaGTTGACTGAAGAAAGCAGATTTAGACGGCATGGT | + |
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Preference number: 6 (lower is better) Translates to: DAGWRLGSGFHP*LTEESRFRRHG Trigger: ACCATGCCGTCTAAATCTGCTTTCTTCAGTCAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS CCA 72 bp | AATCTGATGACTCGTCCCTCTTCCTCTTTTGGATGCTaGATGGAGGCTGGGGAGTGGCTTCCACCCTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: NLMTRPSSSFGC*MEAGEWLPPLV Trigger: AACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCATCAGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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| CDS CAA 72 bp | TTCACCACGGGATCCTCGAGCAACTTGGTGAAGACCTaGTGGTGTTCAGGCCTCACTGTAGACACACATTGC | + |
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Preference number: 6 (lower is better) Translates to: FTTGSSSNLVKT*WCSGLTVDTHC Trigger: GCAATGTGTGTCTACAGTGAGGCCTGAACACCACAAGGTCTTCACCAAGTTGCTCGAGGATCCCGTGGTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031574.10 ENSMUST00000159781.2 |
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