Pregenerated sensors for SPDYE4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039296Ensembl transcript IDs: ENSMUST00000085733.9, ENSMUST00000160502.2, ENSMUST00000195900.5
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTGCCTCTGGAAAGCATGGAGCCTGGAGGAATCCTGATTTCTCATaGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCCAGGAGCG | + |
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Preference number: 1 (lower is better) Translates to: GASGKHGAWRNPDFS*PLQRLLQGSQLPGA Trigger: CGCTCCTGGGAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAATCAGGATTCCTCCAGGCTCCATGCTTTCCAGAGGCACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR TCA 90 bp | CCAGAGACTCCTACAAGGGTCCCAGCTCCCAGGAGCGCAGTGTGGTaGTTCCATCCCACTCCTTCTGGAAGAGTCTGGGTTCTTCTAGGT | + |
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Preference number: 1 (lower is better) Translates to: PETPTRVPAPRSAVW*FHPTPSGRVWVLLG Trigger: ACCTAGAAGAACCCAGACTCTTCCAGAAGGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACCCTTGTAGGAGTCTCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR CCA 90 bp | CCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCTTCTaGAAGAGTCTGGGTTCTTCTAGGTTTCCCATGGAAGATAGTCAG | + |
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Preference number: 1 (lower is better) Translates to: PSSQERSVVIPSHSF*KSLGSSRFPMEDSQ Trigger: CTGACTATCTTCCATGGGAAACCTAGAAGAACCCAGACTCTTCCAGAAGGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAGCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR TCA 90 bp | ACATTTAGATGGTGCCTCTGGAAAGCATGGAGCCTGGAGGAATCCTaGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCT | + |
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Preference number: 1 (lower is better) Translates to: TFRWCLWKAWSLEES*FLMASPETPTRVPA Trigger: AGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAATCAGGATTCCTCCAGGCTCCATGCTTTCCAGAGGCACCATCTAAATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR TCA 90 bp | ATCAAATACTGTATTTTGAAGGTAGTTCCCTCCACATCTGAGCCCTaGGGTGCCTCCTTCAAATGGCCTGAGCAGTGGAGACCAATTACA | + |
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Preference number: 1 (lower is better) Translates to: IKYCILKVVPSTSEP*GASFKWPEQWRPIT Trigger: TGTAATTGGTCTCCACTGCTCAGGCCATTTGAAGGAGGCACCTCAGGGCTCAGATGTGGAGGGAACTACCTTCAAAATACAGTATTTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR-3UTR CAA 90 bp | GAGGTGCCTCCTTCAAATGGCCTGAGCAGTGGAGACCAATTACAGGAAACCACGCTTCAGCTGCTACAGTaGGGAGGTGGGGACCGAGGA | + |
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Preference number: 3 (lower is better) Translates to: EVPPSNGLSSGDQLQETTLQLLQ*GGGDRG Trigger: TCCTCGGTCCCCACCTCCCAACTGTAGCAGCTGAAG...CGTGGTTTCCTGTAATTGGTCTCCACTGCTCAGGCCATTTGAAGGAGGCACCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR CCA 72 bp | GGAAAGCATGGAGCCTGGAGGAATCCTGATTTCTCATaGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: GKHGAWRNPDFS*PLQRLLQGSQL Trigger: GAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAATCAGGATTCCTCCAGGCTCCATGCTTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR TCA 72 bp | TGGTGCCTCTGGAAAGCATGGAGCCTGGAGGAATCCTaGTTTCTCATGGCCTCTCCAGAGACTCCTACAAGG | + |
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Preference number: 3 (lower is better) Translates to: WCLWKAWSLEES*FLMASPETPTR Trigger: CCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAATCAGGATTCCTCCAGGCTCCATGCTTTCCAGAGGCACCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR CCA 72 bp | AGGTGGGGACCGAGGACATTCGGGATAACATTTAGATaGTGCCTCTGGAAAGCATGGAGCCTGGAGGAATCC | + |
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Preference number: 3 (lower is better) Translates to: RWGPRTFGITFR*CLWKAWSLEES Trigger: GGATTCCTCCAGGCTCCATGCTTTCCAGAGGCACCATCTAAATGTTATCCCGAATGTCCTCGGTCCCCACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR TCA 72 bp | TGTATTTTGAAGGTAGTTCCCTCCACATCTGAGCCCTaGGGTGCCTCCTTCAAATGGCCTGAGCAGTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: CILKVVPSTSEP*GASFKWPEQWR Trigger: TCTCCACTGCTCAGGCCATTTGAAGGAGGCACCTCAGGGCTCAGATGTGGAGGGAACTACCTTCAAAATACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR CCA 72 bp | CCTTCTGGAAGAGTCTGGGTTCTTCTAGGTTTCCCATaGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: PSGRVWVLLGFP*KIVSPLSFPPA Trigger: TGCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGGAAACCTAGAAGAACCCAGACTCTTCCAGAAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| 3UTR TCA 72 bp | CCTCTTGAAAGTAATATGCAAACATGTTCAAGTGGTTaGAAGTACCACAGCTCAATAGTCACATTCAATAAT | + |
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Preference number: 3 (lower is better) Translates to: PLESNMQTCSSG*KYHSSIVTFNN Trigger: ATTATTGAATGTGACTATTGAGCTGTGGTACTTTCAACCACTTGAACATGTTTGCATATTACTTTCAAGAGG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS-3UTR TCA 90 bp | TCCTACAAGGGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCGCACAGCATCTCCACTaGCCACACTGGCTGGGGATC | + |
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Preference number: 4 (lower is better) Translates to: SYKGPSSQERSVVIPSHSAQHLH*PHWLGI Trigger: GATCCCCAGCCAGTGTGGTCAGTGGAGATGCTGTGC...GGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACCCTTGTAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR CCA 90 bp | CTCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCTTCTGGAAGAGTCTGGGATGGAGGCTGGGGAGTaGCTTCCACCCTTGGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LPGAQCGDSIPLLLEESGMEAGE*LPPLVL Trigger: CAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCAT...CCCAGACTCTTCCAGAAGGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR TCA 90 bp | CCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCTTAATGTTGGCTACCACCACCCCAGGTaGGGGCCTGGTGATGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: PMEDSQSSLLSPSSLNVGYHHPR*GPGDAR Trigger: CCTGGCATCACCAGGCCCTCACCTGGGGTGGTGGTA...GCCAACATTAAGACTGCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS-3UTR TCA 90 bp | CTGAGCCCTGAGGTGCCTCCTTCAAATGGCCTGAGCAGTGGAGACCAATTACAGGCACAGCATCTCCACTaGCCACACTGGCTGGGGATC | + |
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Preference number: 4 (lower is better) Translates to: LSPEVPPSNGLSSGDQLQAQHLH*PHWLGI Trigger: GATCCCCAGCCAGTGTGGTCAGTGGAGATGCTGTGC...CTGTAATTGGTCTCCACTGCTCAGGCCATTTGAAGGAGGCACCTCAGGGCTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR TCA 90 bp | TCCTACAAGGGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCCAGGAGGTACTTGTCTaGCACCCTCAGCATCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: SYKGPSSQERSVVIPSHSQEVLV*HPQHLV Trigger: GACAAGATGCTGAGGGTGTCAGACAAGTACCTCCTG...GGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACCCTTGTAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR GCA 90 bp | CCACATCTGAGCCCTGAGGTGCCTCCTTCAAATGGCCTGAGCAGTGGAGACCAAGTTGGTGCGATCTCGTaGCCACACCCAAAGGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: PHLSPEVPPSNGLSSGDQVGAIS*PHPKVW Trigger: CCAGACCTTTGGGTGTGGGCACGAGATCGCACCAAC...TTGGTCTCCACTGCTCAGGCCATTTGAAGGAGGCACCTCAGGGCTCAGATGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR TCA 90 bp | TCCTACAAGGGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCCACTCCCTGTTCCCCAGACTGTaGGGAAATTTCACTGGCATC | + |
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Preference number: 4 (lower is better) Translates to: SYKGPSSQERSVVIPSHSLFPRL*GNFTGI Trigger: GATGCCAGTGAAATTTCCTCACAGTCTGGGGAACAG...GGAGTGGGATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACCCTTGTAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR CCA 90 bp | AGAGACTCCTACAAGGGTCCCAGCTCCCAGGAGCGCAGTGTGGTGATTCCATCCCCACACCCAAAGGTCTaGATTGTAAGCCTGGATCTC | + |
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Preference number: 4 (lower is better) Translates to: RDSYKGPSSQERSVVIPSPHPKV*IVSLDL Trigger: GAGATCCAGGCTTACAATCCAGACCTTTGGGTGTGG...GGATGGAATCACCACACTGCGCTCCTGGGAGCTGGGACCCTTGTAGGAGTCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085733.9 ENSMUST00000195900.5 |
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| CDS-3UTR TCA 90 bp | CTTCTAGGTTTCCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCTGGTTCTGCCAGTCCTaGGCTCTCCCCATCTACCAC | + |
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Preference number: 4 (lower is better) Translates to: LLGFPWKIVSPLSFPPAVWFCQS*ALPIYH Trigger: GTGGTAGATGGGGAGAGCTCAGGACTGGCAGAACCA...GACTGCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGGAAACCTAGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS-3UTR CCA 90 bp | GATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCTTAATGTTGGCATAGAGCATCTCCCGCCCTCCTCCTaGACTCTGGCTGAATCCACG | + |
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Preference number: 4 (lower is better) Translates to: DSQSSLLSPSSLNVGIEHLPPSS*TLAEST Trigger: CGTGGATTCAGCCAGAGTCCAGGAGGAGGGCGGGAG...ATGCTCTATGCCAACATTAAGACTGCTGGGGGAAAGGAGAGAGGACTGACTATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS-3UTR TCA 90 bp | ATTCCATCCCACTCCTTCTGGAAGAGTCTGGGTTCTTCTAGGTTTCCCATGGAAGCACAGCATCTCCACTaGCCACACTGGCTGGGGATC | + |
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Preference number: 4 (lower is better) Translates to: IPSHSFWKSLGSSRFPMEAQHLH*PHWLGI Trigger: GATCCCCAGCCAGTGTGGTCAGTGGAGATGCTGTGC...TTCCATGGGAAACCTAGAAGAACCCAGACTCTTCCAGAAGGAGTGGGATGGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR TCA 90 bp | AGGAATCCTGATTTCTCATGGCCTCTCCAGAGACTCCTACAAGGGTCCCAGCTCCAGGAGGTACTTGTCTaGCACCCTCAGCATCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: RNPDFSWPLQRLLQGSQLQEVLV*HPQHLV Trigger: GACAAGATGCTGAGGGTGTCAGACAAGTACCTCCTG...GAGCTGGGACCCTTGTAGGAGTCTCTGGAGAGGCCATGAGAAATCAGGATTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR CCA 90 bp | AGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCTTAATGTTGGCATAGAGCATCTCATGGAGGCTGGGGAGTaGCTTCCACCCTTGGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: SQSSLLSPSSLNVGIEHLMEAGE*LPPLVL Trigger: CAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCAT...GAGATGCTCTATGCCAACATTAAGACTGCTGGGGGAAAGGAGAGAGGACTGACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR CCA 90 bp | GTCTGGGTTCTTCTAGGTTTCCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCATCGTGGTGCTCAGCTaGGGACACTGTTCCCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: VWVLLGFPWKIVSPLSFPIVVLS*GHCSPD Trigger: GTCTGGGGAACAGTGTCCCCAGCTGAGCACCACGAT...GGGAAAGGAGAGAGGACTGACTATCTTCCATGGGAAACCTAGAAGAACCCAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR TCA 90 bp | ATTCCATCCCACTCCTTCTGGAAGAGTCTGGGTTCTTCTAGGTTTCCCATGGAAACAAATCCCAGACTCTaGTCTCTCCCGCCCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: IPSHSFWKSLGSSRFPMETNPRL*SLPPSS Trigger: GGAGGAGGGCGGGAGAGATCAGAGTCTGGGATTTGT...TTCCATGGGAAACCTAGAAGAACCCAGACTCTTCCAGAAGGAGTGGGATGGAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS-3UTR GCA 90 bp | AGTGTGGTGATTCCATCCCACTCCTTCTGGAAGAGTCTGGGTTCTTCTAGGTTTGTTGGTGCGATCTCGTaGCCACACCCAAAGGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: SVVIPSHSFWKSLGSSRFVGAIS*PHPKVW Trigger: CCAGACCTTTGGGTGTGGGCACGAGATCGCACCAAC...AAACCTAGAAGAACCCAGACTCTTCCAGAAGGAGTGGGATGGAATCACCACACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR CCA 90 bp | AGTGTGGTGATTCCATCCCACTCCTTCTGGAAGAGTCTGGGTTCTTCTAGGTTTATGGAGGCTGGGGAGTaGCTTCCACCCTTGGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: SVVIPSHSFWKSLGSSRFMEAGE*LPPLVL Trigger: CAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCAT...AAACCTAGAAGAACCCAGACTCTTCCAGAAGGAGTGGGATGGAATCACCACACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR CCA 90 bp | TCTGGAAGAGTCTGGGTTCTTCTAGGTTTCCCATGGAAGATAGTCAGTCCTCTCATCGTGGTGCTCAGCTaGGGACACTGTTCCCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: SGRVWVLLGFPWKIVSPLIVVLS*GHCSPD Trigger: GTCTGGGGAACAGTGTCCCCAGCTGAGCACCACGAT...GAGAGGACTGACTATCTTCCATGGGAAACCTAGAAGAACCCAGACTCTTCCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR TCA 90 bp | TTCTGGAAGAGTCTGGGTTCTTCTAGGTTTCCCATGGAAGATAGTCAGTCCTCTCTGGTGATGCCAGGCTaGGGGCTCTGTTCCTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: FWKSLGSSRFPMEDSQSSLVMPG*GLCSSE Trigger: TTCTGAGGAACAGAGCCCTCAGCCTGGCATCACCAG...AGAGGACTGACTATCTTCCATGGGAAACCTAGAAGAACCCAGACTCTTCCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS-3UTR CCA 90 bp | CCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCTTAATGTTGGCACTGACCACACTGGCTaGGGATCAGGTTCAAATAGC | + |
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Preference number: 4 (lower is better) Translates to: PMEDSQSSLLSPSSLNVGTDHTG*GSGSNS Trigger: GCTATTTGAACCTGATCCCCAGCCAGTGTGGTCAGT...GCCAACATTAAGACTGCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR TCA 90 bp | ATTCCATCCCACTCCTTCTGGAAGAGTCTGGGTTCTTCTAGGTTTCCCATGGAATTCCTCAGAACACAATaGCAGTTGGCCAGCAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: IPSHSFWKSLGSSRFPMEFLRTQ*QLASSH Trigger: GTGACTGCTGGCCAACTGTCATTGTGTTCTGAGGAA...TTCCATGGGAAACCTAGAAGAACCCAGACTCTTCCAGAAGGAGTGGGATGGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS-3UTR TCA 90 bp | GATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCTTAATGTTGGCATAGAGCATCTGTTCCCCAGACTGTaGGGAAATTTCACTGGCATC | + |
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Preference number: 4 (lower is better) Translates to: DSQSSLLSPSSLNVGIEHLFPRL*GNFTGI Trigger: GATGCCAGTGAAATTTCCTCACAGTCTGGGGAACAG...ATGCTCTATGCCAACATTAAGACTGCTGGGGGAAAGGAGAGAGGACTGACTATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR GCA 90 bp | ACATTTCATCTTTATTGTCTGTCCACAGTGCAAGGAGCTTGTAACATGGATTCTGTTGGTGCGATCTCGTaGCCACACCCAAAGGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: TFHLYCLSTVQGACNMDSVGAIS*PHPKVW Trigger: CCAGACCTTTGGGTGTGGGCACGAGATCGCACCAAC...AGAATCCATGTTACAAGCTCCTTGCACTGTGGACAGACAATAAAGATGAAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS-3UTR TCA 90 bp | GAAAATGAAACACATTTCATCTTTATTGTCTGTCCACAGTGCAAGGAGCTTGTACAGGAGGTACTTGTCTaGCACCCTCAGCATCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ENETHFIFIVCPQCKELVQEVLV*HPQHLV Trigger: GACAAGATGCTGAGGGTGTCAGACAAGTACCTCCTG...TACAAGCTCCTTGCACTGTGGACAGACAATAAAGATGAAATGTGTTTCATTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS-3UTR CCA 90 bp | ACACATTTCATCTTTATTGTCTGTCCACAGTGCAAGGAGCTTGTAACATGGATTCCACACCCAAAGGTCTaGATTGTAAGCCTGGATCTC | + |
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Preference number: 4 (lower is better) Translates to: THFIFIVCPQCKELVTWIPHPKV*IVSLDL Trigger: GAGATCCAGGCTTACAATCCAGACCTTTGGGTGTGG...AATCCATGTTACAAGCTCCTTGCACTGTGGACAGACAATAAAGATGAAATGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS CCA 90 bp | TCTAATGACTCGTCCCTCTTCCTCTTTTGGATGCTGGATGGAGGCTaGGGAGTGGCTTCCACCCTTGGTTCTGCCAGTCCTGAGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SNDSSLFLFWMLDGG*GVASTLGSASPELS Trigger: GGAGAGCTCAGGACTGGCAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCATTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS GCA 90 bp | GGTCATCCTCAGAATCTAATGACTCGTCCCTCTTCCTCTTTTGGATaGTGGATGGAGGCTGGGGAGTGGCTTCCACCCTTGGTTCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: GHPQNLMTRPSSSFG*WMEAGEWLPPLVLP Trigger: TGGCAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCATTAGATTCTGAGGATGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS CCA 90 bp | CATCCTCAGAATCTAATGACTCGTCCCTCTTCCTCTTTTGGATGCTaGATGGAGGCTGGGGAGTGGCTTCCACCCTTGGTTCTGCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: HPQNLMTRPSSSFGC*MEAGEWLPPLVLPV Trigger: GACTGGCAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCATTAGATTCTGAGGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS CCA 90 bp | GCCAGGTCATCCTCAGAATCTAATGACTCGTCCCTCTTCCTCTTTTaGATGCTGGATGGAGGCTGGGGAGTGGCTTCCACCCTTGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: ARSSSESNDSSLFLF*MLDGGWGVASTLGS Trigger: AGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCATTAGATTCTGAGGATGACCTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS GCA 90 bp | GGTCATCCTCAGAATCTAATGACTCGTCCCTCTTCCTCTTTTGGATaGTGGATGGAGGCTGGGGAGTGGCTTCCACCCTTGGTTCTGATA | + |
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Preference number: 5 (lower is better) Translates to: GHPQNLMTRPSSSFG*WMEAGEWLPPLVLI Trigger: TATCAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCATTAGATTCTGAGGATGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS CCA 90 bp | TCTAATGACTCGTCCCTCTTCCTCTTTTGGATGCTGGATGGAGGCTaGGGAGTGGCTTCCACCCTTGGTTCTGATAATGCTGGGATAGCA | + |
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Preference number: 5 (lower is better) Translates to: SNDSSLFLFWMLDGG*GVASTLGSDNAGIA Trigger: TGCTATCCCAGCATTATCAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCATTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR CAA 90 bp | TTCTGGAAGAGTCTGGGTTCTTCTAGGTTTCCCATGGAAGATAGTCAGTCCTCTGAGTGGCTTCCACCCTaGGTTCTGCCAGTCCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: FWKSLGSSRFPMEDSQSSEWLPP*VLPVLS Trigger: GCTCAGGACTGGCAGAACCAAGGGTGGAAGCCACTC...AGAGGACTGACTATCTTCCATGGGAAACCTAGAAGAACCCAGACTCTTCCAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS-3UTR CAA 90 bp | CTGGAAAGCATGGAGCCTGGAGGAATCCTGATTTCTCATGGCCTCTCCAGAGACATAGACAGGAGGTACTaGTCTGACACCCTCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: LESMEPGGILISHGLSRDIDRRY*SDTLSI Trigger: GATGCTGAGGGTGTCAGACAAGTACCTCCTGTCTAT...GTCTCTGGAGAGGCCATGAGAAATCAGGATTCCTCCAGGCTCCATGCTTTCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS CCA 90 bp | CATCCTCAGAATCTAATGACTCGTCCCTCTTCCTCTTTTGGATGCTaGATGGAGGCTGGGGAGTGGCTTCCACCCTTGGTTCTGATAATG | + |
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Preference number: 5 (lower is better) Translates to: HPQNLMTRPSSSFGC*MEAGEWLPPLVLIM Trigger: CATTATCAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCATTAGATTCTGAGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR CAA 90 bp | GGTTCTTCTAGGTTTCCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCATAGACAGGAGGTACTaGTCTGACACCCTCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: GSSRFPMEDSQSSLLSPSIDRRY*SDTLSI Trigger: GATGCTGAGGGTGTCAGACAAGTACCTCCTGTCTAT...GCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGGAAACCTAGAAGAACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR CAA 90 bp | GTCTGGGTTCTTCTAGGTTTCCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCGAGTGGCTTCCACCCTaGGTTCTGATAATGCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: VWVLLGFPWKIVSPLSFPEWLPP*VLIMLG Trigger: TCCCAGCATTATCAGAACCAAGGGTGGAAGCCACTC...GGGAAAGGAGAGAGGACTGACTATCTTCCATGGGAAACCTAGAAGAACCCAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS-3UTR CAA 90 bp | TCTAGGTTTCCCATGGAAGATAGTCAGTCCTCTCTCCTTTCCCCCAGCAGTCTTATAGACAGGAGGTACTaGTCTGACACCCTCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: SRFPMEDSQSSLLSPSSLIDRRY*SDTLSI Trigger: GATGCTGAGGGTGTCAGACAAGTACCTCCTGTCTAT...AAGACTGCTGGGGGAAAGGAGAGAGGACTGACTATCTTCCATGGGAAACCTAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS CCA 72 bp | TCTTCCTCTTTTGGATGCTGGATGGAGGCTGGGGAGTaGCTTCCACCCTTGGTTCTGCCAGTCCTGAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: SSSFGCWMEAGE*LPPLVLPVLSS Trigger: AGAGCTCAGGACTGGCAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085733.9 |
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| CDS CCA 72 bp | ACCACAGGATCCTCGAGCAGCTTGGTGAAGACCTTGTaGTGTTCAGGCCTCACTGTAGACACACGTCGCCTC | + |
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Preference number: 6 (lower is better) Translates to: TTGSSSSLVKTL*CSGLTVDTRRL Trigger: GAGGCGACGTGTGTCTACAGTGAGGCCTGAACACCACAAGGTCTTCACCAAGCTGCTCGAGGATCCTGTGGT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS CAA 72 bp | TTCACCACAGGATCCTCGAGCAGCTTGGTGAAGACCTaGTGGTGTTCAGGCCTCACTGTAGACACACGTCGC | + |
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Preference number: 6 (lower is better) Translates to: FTTGSSSSLVKT*WCSGLTVDTRR Trigger: GCGACGTGTGTCTACAGTGAGGCCTGAACACCACAAGGTCTTCACCAAGCTGCTCGAGGATCCTGTGGTGAA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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| CDS CCA 72 bp | AATCTAATGACTCGTCCCTCTTCCTCTTTTGGATGCTaGATGGAGGCTGGGGAGTGGCTTCCACCCTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: NLMTRPSSSFGC*MEAGEWLPPLV Trigger: AACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCATTAGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000085733.9 ENSMUST00000160502.2 ENSMUST00000195900.5 |
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