Pregenerated sensors for SPDYA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052525Ensembl transcript IDs: ENSMUST00000064420.12, ENSMUST00000124001.8, ENSMUST00000144142.2, ENSMUST00000167641.8
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACACAGACCATGTCCCTGCATTGCTTGACTTATTCACTGGTAAAGTaGTCGCACATGTCAGTACTGTTTTCAGAATATATTAATTGTTTT | + |
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Preference number: 1 (lower is better) Translates to: TQTMSLHCLTYSLVK*SHMSVLFSEYINCF Trigger: AAAACAATTAATATATTCTGAAAACAGTACTGACATGTGCGACCACTTTACCAGTGAATAAGTCAAGCAATGCAGGGACATGGTCTGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR-3UTR GCA 90 bp | GAAATATGGTGTTTTTCTAGCTCCTACAACATTGCTGAAGTTCTTCCAAGAAACCCGTTTTCGTTCTCTTaGATTTGGTTTGCCATTCTG | + |
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Preference number: 2 (lower is better) Translates to: EIWCFSSSYNIAEVLPRNPFSFS*IWFAIL Trigger: CAGAATGGCAAACCAAATGCAAGAGAACGAAAACGG...GTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACACCATATTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGTAAAACATTTGTACAGTGTGCATTTTCTGTTACAGAAGAGTCACATTCTGAACCTTTTAAGCTGGTaGAGGAAGTTCAGACCACAC | + |
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Preference number: 2 (lower is better) Translates to: TVKHLYSVHFLLQKSHILNLLSW*RKFRPH Trigger: GTGTGGTCTGAACTTCCTCCACCAGCTTAAAAGGTT...CAGAATGTGACTCTTCTGTAACAGAAAATGCACACTGTACAAATGTTTTACAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR-3UTR TCA 90 bp | TACAACATTGCTGAAGTTCTTCCAAGAAACAAGTTTAGGTACTCATATGTACACAGAAGAGTCACATTCTaGTTTTCCACACAGACCATG | + |
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Preference number: 2 (lower is better) Translates to: YNIAEVLPRNKFRYSYVHRRVTF*FSTQTM Trigger: CATGGTCTGTGTGGAAAATCAGAATGTGACTCTTCT...GTGTACATATGAGTACCTAAACTTGTTTCTTGGAAGAACTTCAGCAATGTTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR-3UTR TCA 90 bp | GAAATATGGTGTTTTTCTAGCTCCTACAACATTGCTGAAGTTCTTCCAAGAAACCGATACATTGATTTATaGAACAGGCTTCTCCGTTTG | + |
|
Preference number: 2 (lower is better) Translates to: EIWCFSSSYNIAEVLPRNRYIDL*NRLLRL Trigger: CAAACGGAGAAGCCTGTTTCATAAATCAATGTATCG...GTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACACCATATTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGTAAAACATTTGTACAGTGTGCATTTTCTGTTACAGAAGAGTCACATTCTGCCGTTTTCGTTCTCTTaGATTTGGTTTGCCATTCTG | + |
|
Preference number: 2 (lower is better) Translates to: TVKHLYSVHFLLQKSHILPFSFS*IWFAIL Trigger: CAGAATGGCAAACCAAATGCAAGAGAACGAAAACGG...CAGAATGTGACTCTTCTGTAACAGAAAATGCACACTGTACAAATGTTTTACAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR TCA 72 bp | ACAGTGTGCATTTTCTGTTACAGAAGAGTCACATTCTaGTTTTCCACACAGACCATGTCCCTGCATTGCTTG | + |
|
Preference number: 3 (lower is better) Translates to: TVCIFCYRRVTF*FSTQTMSLHCL Trigger: CAAGCAATGCAGGGACATGGTCTGTGTGGAAAATCAGAATGTGACTCTTCTGTAACAGAAAATGCACACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR-3UTR CAA 90 bp | GAAATATGGTGTTTTTCTAGCTCCTACAACATTGCTGAAGTTCTTCCAAGAAACTCTCTTGCATTTGGTTaGCCATTCTGTAGCTGTGAC | + |
|
Preference number: 3 (lower is better) Translates to: EIWCFSSSYNIAEVLPRNSLAFG*PFCSCD Trigger: GTCACAGCTACAGAATGGCAAACCAAATGCAAGAGA...GTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACACCATATTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR-3UTR CAA 90 bp | ACTTATTCACTGGTAAAGTGGTCGCACATGTCAGTACTGTTTTCAGAATATATTTCTCTTGCATTTGGTTaGCCATTCTGTAGCTGTGAC | + |
|
Preference number: 3 (lower is better) Translates to: TYSLVKWSHMSVLFSEYISLAFG*PFCSCD Trigger: GTCACAGCTACAGAATGGCAAACCAAATGCAAGAGA...AATATATTCTGAAAACAGTACTGACATGTGCGACCACTTTACCAGTGAATAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR-3UTR CAA 90 bp | GAAATATGGTGTTTTTCTAGCTCCTACAACATTGCTGAAGTTCTTCCAAGAAACTTCGTTCTCTTGCATTaGGTTTGCCATTCTGTAGCT | + |
|
Preference number: 3 (lower is better) Translates to: EIWCFSSSYNIAEVLPRNFVLLH*VCHSVA Trigger: AGCTACAGAATGGCAAACCAAATGCAAGAGAACGAA...GTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACACCATATTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR CCA 72 bp | ATGTCCCTGCATTGCTTGACTTATTCACTGGTAAAGTaGTCGCACATGTCAGTACTGTTTTCAGAATATATT | + |
|
Preference number: 3 (lower is better) Translates to: MSLHCLTYSLVK*SHMSVLFSEYI Trigger: AATATATTCTGAAAACAGTACTGACATGTGCGACCACTTTACCAGTGAATAAGTCAAGCAATGCAGGGACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR-3UTR CAA 90 bp | ACTTATTCACTGGTAAAGTGGTCGCACATGTCAGTACTGTTTTCAGAATATATTTTCGTTCTCTTGCATTaGGTTTGCCATTCTGTAGCT | + |
|
Preference number: 3 (lower is better) Translates to: TYSLVKWSHMSVLFSEYIFVLLH*VCHSVA Trigger: AGCTACAGAATGGCAAACCAAATGCAAGAGAACGAA...AATATATTCTGAAAACAGTACTGACATGTGCGACCACTTTACCAGTGAATAAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR-3UTR CAA 90 bp | ACTGTAAAACATTTGTACAGTGTGCATTTTCTGTTACAGAAGAGTCACATTCTGATGTCCCTGCATTGCTaGACTTATTCACTGGTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: TVKHLYSVHFLLQKSHILMSLHC*TYSLVK Trigger: CTTTACCAGTGAATAAGTCAAGCAATGCAGGGACAT...CAGAATGTGACTCTTCTGTAACAGAAAATGCACACTGTACAAATGTTTTACAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR TCA 72 bp | GTTATAAGCCCATCTGTAGAGTTACTGTGTAATCACTaGCAAATGTTTCTGATAGTAACTAGCCAAACAGTC | + |
|
Preference number: 3 (lower is better) Translates to: VISPSVELLCNH*QMFLIVTSQTV Trigger: GACTGTTTGGCTAGTTACTATCAGAAACATTTGTCAGTGATTACACAGTAACTCTACAGATGGGCTTATAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR TCA 72 bp | CAAGCCTTAATAGTTGGACCTCGTAGCATAGTGAGGTaGAGTTTAATATATGTTACAATCCTTTTTAGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: QALIVGPRSIVR*SLIYVTILFSV Trigger: CACACTAAAAAGGATTGTAACATATATTAAACTTCACCTCACTATGCTACGAGGTCCAACTATTAAGGCTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124001.8 |
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| CDS-3UTR TCA 90 bp | TACAACATTGCTGAAGTTCTTCCAAGAAACAAGTTTAGGTACTCATATGTACACTTGGCGCAATGGCCATaGCCTCTTCACAGCATCGCC | + |
|
Preference number: 4 (lower is better) Translates to: YNIAEVLPRNKFRYSYVHLAQWP*PLHSIA Trigger: GGCGATGCTGTGAAGAGGTCATGGCCATTGCGCCAA...GTGTACATATGAGTACCTAAACTTGTTTCTTGGAAGAACTTCAGCAATGTTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR TCA 90 bp | GAAATATGGTGTTTTTCTAGCTCCTACAACATTGCTGAAGTTCTTCCAAGAAACCTAACAGCTCCACTGTaGTGCACAGACCGCTCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: EIWCFSSSYNIAEVLPRNLTAPL*CTDRSR Trigger: ACGAGAGCGGTCTGTGCATCACAGTGGAGCTGTTAG...GTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACACCATATTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR GCA 90 bp | AGTCCCGTTTTCGTTCTCTTGCATTTGGTTTGCCATTCTGTAGCTGTGACTCCACAAAAGATACTTGTCTaGAATCTTGCAGCAGCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: SPVFVLLHLVCHSVAVTPQKILV*NLAAAV Trigger: GACTGCTGCTGCAAGATTGCAGACAAGTATCTTTTG...TGGAGTCACAGCTACAGAATGGCAAACCAAATGCAAGAGAACGAAAACGGGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| 3UTR CAA 72 bp | ATTGTACAACTGGGTAACAGTCCCGTTTTCGTTCTCTaGCATTTGGTTTGCCATTCTGTAGCTGTGACTCCA | + |
|
Preference number: 4 (lower is better) Translates to: IVQLGNSPVFVL*HLVCHSVAVTP Trigger: TGGAGTCACAGCTACAGAATGGCAAACCAAATGCAAGAGAACGAAAACGGGACTGTTACCCAGTTGTACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR TCA 90 bp | TTTCGTTCTCTTGCATTTGGTTTGCCATTCTGTAGCTGTGACTCCAGCTTGCTTGAGCCTGATTTTACATaGATAGTGACAGTAGGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: FRSLAFGLPFCSCDSSLLEPDFT*IVTVGG Trigger: ACCACCTACTGTCACTATTCATGTAAAATCAGGCTC...AAGCAAGCTGGAGTCACAGCTACAGAATGGCAAACCAAATGCAAGAGAACGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR TCA 90 bp | TACAACATTGCTGAAGTTCTTCCAAGAAACAAGTTTAGGTACTCATATGTACACCTAACAGCTCCACTGTaGTGCACAGACCGCTCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: YNIAEVLPRNKFRYSYVHLTAPL*CTDRSR Trigger: ACGAGAGCGGTCTGTGCATCACAGTGGAGCTGTTAG...GTGTACATATGAGTACCTAAACTTGTTTCTTGGAAGAACTTCAGCAATGTTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR TCA 90 bp | TTTCGTTCTCTTGCATTTGGTTTGCCATTCTGTAGCTGTGACTCCAGCTTGCTTGCACTGTGTAGTTCCTaGGAATCTTTTTCCATTAGC | + |
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Preference number: 4 (lower is better) Translates to: FRSLAFGLPFCSCDSSLLALCSS*ESFSIS Trigger: GCTAATGGAAAAAGATTCTCAGGAACTACACAGTGC...AAGCAAGCTGGAGTCACAGCTACAGAATGGCAAACCAAATGCAAGAGAACGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CCA 90 bp | AGTCCCGTTTTCGTTCTCTTGCATTTGGTTTGCCATTCTGTAGCTGTGACTCCAAATAGTGACAGTAGGTaGTGTCTCACAATACATCTG | + |
|
Preference number: 4 (lower is better) Translates to: SPVFVLLHLVCHSVAVTPNSDSR*CLTIHL Trigger: CAGATGTATTGTGAGACACCACCTACTGTCACTATT...TGGAGTCACAGCTACAGAATGGCAAACCAAATGCAAGAGAACGAAAACGGGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CCA 90 bp | TTTCGTTCTCTTGCATTTGGTTTGCCATTCTGTAGCTGTGACTCCAGCTTGCTTAAAGCAGTCATTTCCTaGCGCTGTATGATTAGACAA | + |
|
Preference number: 4 (lower is better) Translates to: FRSLAFGLPFCSCDSSLLKAVIS*RCMIRQ Trigger: TTGTCTAATCATACAGCGCCAGGAAATGACTGCTTT...AAGCAAGCTGGAGTCACAGCTACAGAATGGCAAACCAAATGCAAGAGAACGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CCA 90 bp | ACTGTAAAACATTTGTACAGTGTGCATTTTCTGTTACAGAAGAGTCACATTCTGCCAGATGTAATGGGTTaGCGCAATGGCCATGACCTC | + |
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Preference number: 4 (lower is better) Translates to: TVKHLYSVHFLLQKSHILPDVMG*RNGHDL Trigger: GAGGTCATGGCCATTGCGCCAACCCATTACATCTGG...CAGAATGTGACTCTTCTGTAACAGAAAATGCACACTGTACAAATGTTTTACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CCA 90 bp | GAAATATGGTGTTTTTCTAGCTCCTACAACATTGCTGAAGTTCTTCCAAGAAACGCTCTCCTGTGTCACTaGAGGAAGATGAGGATGAAG | + |
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Preference number: 4 (lower is better) Translates to: EIWCFSSSYNIAEVLPRNALLCH*RKMRMK Trigger: CTTCATCCTCATCTTCCTCCAGTGACACAGGAGAGC...GTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACACCATATTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CCA 90 bp | ACTTATTCACTGGTAAAGTGGTCGCACATGTCAGTACTGTTTTCAGAATATATTGCTCTCCTGTGTCACTaGAGGAAGATGAGGATGAAG | + |
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Preference number: 4 (lower is better) Translates to: TYSLVKWSHMSVLFSEYIALLCH*RKMRMK Trigger: CTTCATCCTCATCTTCCTCCAGTGACACAGGAGAGC...AATATATTCTGAAAACAGTACTGACATGTGCGACCACTTTACCAGTGAATAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR GCA 90 bp | TTTCGTTCTCTTGCATTTGGTTTGCCATTCTGTAGCTGTGACTCCAGCTTGCTTAGCATTGTTTTCAGATaGTTCCCAACTATCTTTAAG | + |
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Preference number: 4 (lower is better) Translates to: FRSLAFGLPFCSCDSSLLSIVFR*FPTIFK Trigger: CTTAAAGATAGTTGGGAAGCATCTGAAAACAATGCT...AAGCAAGCTGGAGTCACAGCTACAGAATGGCAAACCAAATGCAAGAGAACGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR GCA 90 bp | ACTGTAAAACATTTGTACAGTGTGCATTTTCTGTTACAGAAGAGTCACATTCTGACTTGTCTGCAATCTTaGAGCAGCAGTCCATCCACA | + |
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Preference number: 4 (lower is better) Translates to: TVKHLYSVHFLLQKSHILTCLQS*SSSPST Trigger: TGTGGATGGACTGCTGCTGCAAGATTGCAGACAAGT...CAGAATGTGACTCTTCTGTAACAGAAAATGCACACTGTACAAATGTTTTACAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR TCA 90 bp | GAAATATGGTGTTTTTCTAGCTCCTACAACATTGCTGAAGTTCTTCCAAGAAACGAGCCTGATTTTACATaGATAGTGACAGTAGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: EIWCFSSSYNIAEVLPRNEPDFT*IVTVGG Trigger: ACCACCTACTGTCACTATTCATGTAAAATCAGGCTC...GTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACACCATATTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR GCA 90 bp | GAAATATGGTGTTTTTCTAGCTCCTACAACATTGCTGAAGTTCTTCCAAGAAACCAAAAGATACTTGTCTaGAATCTTGCAGCAGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: EIWCFSSSYNIAEVLPRNQKILV*NLAAAV Trigger: GACTGCTGCTGCAAGATTGCAGACAAGTATCTTTTG...GTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACACCATATTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR TCA 90 bp | GAAATATGGTGTTTTTCTAGCTCCTACAACATTGCTGAAGTTCTTCCAAGAAACATAGGTTTTCTGGTTTaGTGTGACCTATTTGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: EIWCFSSSYNIAEVLPRNIGFLV*CDLFEP Trigger: AGGCTCAAATAGGTCACATCAAACCAGAAAACCTAT...GTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACACCATATTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR TCA 90 bp | TACAACATTGCTGAAGTTCTTCCAAGAAACAAGTTTAGGTACTCATATGTACACGCACTGTGTAGTTCCTaGGAATCTTTTTCCATTAGC | + |
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Preference number: 4 (lower is better) Translates to: YNIAEVLPRNKFRYSYVHALCSS*ESFSIS Trigger: GCTAATGGAAAAAGATTCTCAGGAACTACACAGTGC...GTGTACATATGAGTACCTAAACTTGTTTCTTGGAAGAACTTCAGCAATGTTGTA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR TCA 90 bp | ACTTATTCACTGGTAAAGTGGTCGCACATGTCAGTACTGTTTTCAGAATATATTATAGGTTTTCTGGTTTaGTGTGACCTATTTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: TYSLVKWSHMSVLFSEYIIGFLV*CDLFEP Trigger: AGGCTCAAATAGGTCACATCAAACCAGAAAACCTAT...AATATATTCTGAAAACAGTACTGACATGTGCGACCACTTTACCAGTGAATAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CCA 90 bp | ACTGTAAAACATTTGTACAGTGTGCATTTTCTGTTACAGAAGAGTCACATTCTGAAAGCAGTCATTTCCTaGCGCTGTATGATTAGACAA | + |
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Preference number: 4 (lower is better) Translates to: TVKHLYSVHFLLQKSHILKAVIS*RCMIRQ Trigger: TTGTCTAATCATACAGCGCCAGGAAATGACTGCTTT...CAGAATGTGACTCTTCTGTAACAGAAAATGCACACTGTACAAATGTTTTACAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CCA 90 bp | ACTTATTCACTGGTAAAGTGGTCGCACATGTCAGTACTGTTTTCAGAATATATTATTCTGTCCCAGAGTTaGTCCCTTAACTTTAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: TYSLVKWSHMSVLFSEYIILSQS*SLNFKK Trigger: TTTCTTAAAGTTAAGGGACCAACTCTGGGACAGAAT...AATATATTCTGAAAACAGTACTGACATGTGCGACCACTTTACCAGTGAATAAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CCA 90 bp | ACTTATTCACTGGTAAAGTGGTCGCACATGTCAGTACTGTTTTCAGAATATATTTTGATTGATGGTCATTaGCTTGAGAATAGGTATGAG | + |
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Preference number: 4 (lower is better) Translates to: TYSLVKWSHMSVLFSEYILIDGH*LENRYE Trigger: CTCATACCTATTCTCAAGCCAATGACCATCAATCAA...AATATATTCTGAAAACAGTACTGACATGTGCGACCACTTTACCAGTGAATAAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064420.12 |
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| CDS-3UTR GCA 90 bp | ACTTATTCACTGGTAAAGTGGTCGCACATGTCAGTACTGTTTTCAGAATATATTAGCATTGTTTTCAGATaGTTCCCAACTATCTTTAAG | + |
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Preference number: 4 (lower is better) Translates to: TYSLVKWSHMSVLFSEYISIVFR*FPTIFK Trigger: CTTAAAGATAGTTGGGAAGCATCTGAAAACAATGCT...AATATATTCTGAAAACAGTACTGACATGTGCGACCACTTTACCAGTGAATAAGT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS TCA 90 bp | GGAGGGTCACCTGCCGTGTCCACTGAGAATGCACTGTGTAGTTCCTaGGAATCTTTTTCCATTAGCTCTCCTGTGTCACTGGAGGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: GGSPAVSTENALCSS*ESFSISSPVSLEED Trigger: ATCTTCCTCCAGTGACACAGGAGAGCTAATGGAAAAAGATTCTCAGGAACTACACAGTGCATTCTCAGTGGACACGGCAGGTGACCCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000064420.12 ENSMUST00000124001.8 ENSMUST00000144142.2 ENSMUST00000167641.8 |
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| CDS CCA 90 bp | TGTGTAGTTCCTGAGAATCTTTTTCCATTAGCTCTCCTGTGTCACTaGAGGAAGATGAGGATGAAGACAGTCCCAGTCTCACGTATCTTC | + |
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Preference number: 5 (lower is better) Translates to: CVVPENLFPLALLCH*RKMRMKTVPVSRIF Trigger: GAAGATACGTGAGACTGGGACTGTCTTCATCCTCATCTTCCTCCAGTGACACAGGAGAGCTAATGGAAAAAGATTCTCAGGAACTACACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000064420.12 ENSMUST00000124001.8 ENSMUST00000144142.2 ENSMUST00000167641.8 |
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| CDS-3UTR CAA 90 bp | AGTCCCGTTTTCGTTCTCTTGCATTTGGTTTGCCATTCTGTAGCTGTGACTCCAATAGCCAAAAGATACTaGTCTGCAATCTTGCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: SPVFVLLHLVCHSVAVTPIAKRY*SAILQQ Trigger: CTGCTGCAAGATTGCAGACAAGTATCTTTTGGCTAT...TGGAGTCACAGCTACAGAATGGCAAACCAAATGCAAGAGAACGAAAACGGGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CAA 90 bp | ACTGTAAAACATTTGTACAGTGTGCATTTTCTGTTACAGAAGAGTCACATTCTGCACAGACCGCTCTCGTaGCCAGATGTAATGGGTTGG | + |
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Preference number: 5 (lower is better) Translates to: TVKHLYSVHFLLQKSHILHRPLS*PDVMGW Trigger: CCAACCCATTACATCTGGCAACGAGAGCGGTCTGTG...CAGAATGTGACTCTTCTGTAACAGAAAATGCACACTGTACAAATGTTTTACAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS GCA 90 bp | CCCTCTGGGCCGCTTAGATTTGTTATTCTGAGCATTGTTTTCAGATaGTTCCCAACTATCTTTAAGAATAGGACGTTTCAGACTAATAGG | + |
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Preference number: 5 (lower is better) Translates to: PSGPLRFVILSIVFR*FPTIFKNRTFQTNR Trigger: CCTATTAGTCTGAAACGTCCTATTCTTAAAGATAGTTGGGAAGCATCTGAAAACAATGCTCAGAATAACAAATCTAAGCGGCCCAGAGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000064420.12 ENSMUST00000124001.8 ENSMUST00000144142.2 ENSMUST00000167641.8 |
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| CDS-3UTR CAA 90 bp | TACAACATTGCTGAAGTTCTTCCAAGAAACAAGTTTAGGTACTCATATGTACACTACTTGTCTGCAATCTaGCAGCAGCAGTCCATCCAC | + |
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Preference number: 5 (lower is better) Translates to: YNIAEVLPRNKFRYSYVHYLSAI*QQQSIH Trigger: GTGGATGGACTGCTGCTGCAAGATTGCAGACAAGTA...GTGTACATATGAGTACCTAAACTTGTTTCTTGGAAGAACTTCAGCAATGTTGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CAA 90 bp | ACTTATTCACTGGTAAAGTGGTCGCACATGTCAGTACTGTTTTCAGAATATATTTACTTGTCTGCAATCTaGCAGCAGCAGTCCATCCAC | + |
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Preference number: 5 (lower is better) Translates to: TYSLVKWSHMSVLFSEYIYLSAI*QQQSIH Trigger: GTGGATGGACTGCTGCTGCAAGATTGCAGACAAGTA...AATATATTCTGAAAACAGTACTGACATGTGCGACCACTTTACCAGTGAATAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS-3UTR CAA 90 bp | ACTGTAAAACATTTGTACAGTGTGCATTTTCTGTTACAGAAGAGTCACATTCTGATAGCCAAAAGATACTaGTCTGCAATCTTGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: TVKHLYSVHFLLQKSHILIAKRY*SAILQQ Trigger: CTGCTGCAAGATTGCAGACAAGTATCTTTTGGCTAT...CAGAATGTGACTCTTCTGTAACAGAAAATGCACACTGTACAAATGTTTTACAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000064420.12 ENSMUST00000167641.8 |
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| CDS CCA 72 bp | ATGCACAGACCGCTCTCGTTGCCAGATGTAATGGGTTaGCGCAATGGCCATGACCTCTTCACAGCATCGCCT | + |
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Preference number: 6 (lower is better) Translates to: MHRPLSLPDVMG*RNGHDLFTASP Trigger: AGGCGATGCTGTGAAGAGGTCATGGCCATTGCGCCAACCCATTACATCTGGCAACGAGAGCGGTCTGTGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000064420.12 ENSMUST00000124001.8 ENSMUST00000144142.2 ENSMUST00000167641.8 |
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| CDS CAA 72 bp | CCTAACAGCTCCACTGTGATGCACAGACCGCTCTCGTaGCCAGATGTAATGGGTTGGCGCAATGGCCATGAC | + |
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Preference number: 6 (lower is better) Translates to: PNSSTVMHRPLS*PDVMGWRNGHD Trigger: GTCATGGCCATTGCGCCAACCCATTACATCTGGCAACGAGAGCGGTCTGTGCATCACAGTGGAGCTGTTAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000064420.12 ENSMUST00000124001.8 ENSMUST00000144142.2 ENSMUST00000167641.8 |
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| CDS CAA 90 bp | GTTGTAGTTCCTAACAGCTCCACTGTGATGCACAGACCGCTCTCGTaGCCAGATGTAATGGGTTGGCGCAATGGCCATGACCTCTTCACA | + |
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Preference number: 6 (lower is better) Translates to: VVVPNSSTVMHRPLS*PDVMGWRNGHDLFT Trigger: TGTGAAGAGGTCATGGCCATTGCGCCAACCCATTACATCTGGCAACGAGAGCGGTCTGTGCATCACAGTGGAGCTGTTAGGAACTACAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000064420.12 ENSMUST00000124001.8 ENSMUST00000144142.2 ENSMUST00000167641.8 |
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| CDS TCA 72 bp | CCTGCCGTGTCCACTGAGAATGCACTGTGTAGTTCCTaGGAATCTTTTTCCATTAGCTCTCCTGTGTCACTG | + |
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Preference number: 6 (lower is better) Translates to: PAVSTENALCSS*ESFSISSPVSL Trigger: CAGTGACACAGGAGAGCTAATGGAAAAAGATTCTCAGGAACTACACAGTGCATTCTCAGTGGACACGGCAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000064420.12 ENSMUST00000124001.8 ENSMUST00000144142.2 ENSMUST00000167641.8 |
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| CDS CAA 72 bp | CAGTTTTTCCCTAAAGCCCATGGAAAAATTTCATACTaGGCTTCTTCTTCATCTTCTTCAACCGTATTAGCC | + |
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Preference number: 6 (lower is better) Translates to: QFFPKAHGKISY*ASSSSSSTVLA Trigger: GGCTAATACGGTTGAAGAAGATGAAGAAGAAGCCAAGTATGAAATTTTTCCATGGGCTTTAGGGAAAAACTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000064420.12 ENSMUST00000124001.8 ENSMUST00000144142.2 ENSMUST00000167641.8 |
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| CDS GCA 72 bp | CCGCTTAGATTTGTTATTCTGAGCATTGTTTTCAGATaGTTCCCAACTATCTTTAAGAATAGGACGTTTCAG | + |
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Preference number: 6 (lower is better) Translates to: PLRFVILSIVFR*FPTIFKNRTFQ Trigger: CTGAAACGTCCTATTCTTAAAGATAGTTGGGAAGCATCTGAAAACAATGCTCAGAATAACAAATCTAAGCGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000064420.12 ENSMUST00000124001.8 ENSMUST00000144142.2 ENSMUST00000167641.8 |
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