Pregenerated sensors for SPCS3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054408Ensembl transcript IDs: ENSMUST00000067476.9
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGACCCCGAAATGTTTAAGGAACGTGCTGGTGCCAATCTCAAGGTaGGCCTCTGACCTTTCTGCTGGTAAGAAAACCTCAAACACATGC | + |
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Preference number: 1 (lower is better) Translates to: ETPKCLRNVLVPISR*ASDLSAGKKTSNTC Trigger: GCATGTGTTTGAGGTTTTCTTACCAGCAGAAAGGTCAGAGGCGCACCTTGAGATTGGCACCAGCACGTTCCTTAAACATTTCGGGGTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR CCA 90 bp | AGGATCACTCAAGACAACACTCAACACAGGAGAGAAACCTGTGGGTaGAAAAGCACTGACAGCTGTCCCTACTGTTCCAACTGTAAAAGT | + |
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Preference number: 1 (lower is better) Translates to: RITQDNTQHRRETCG*KSTDSCPYCSNCKS Trigger: ACTTTTACAGTTGGAACAGTAGGGACAGCTGTCAGTGCTTTTCCACCCACAGGTTTCTCTCCTGTGTTGAGTGTTGTCTTGAGTGATCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR CCA 90 bp | GCAGCTGCTCCCTCAGCTGCTAAAAACAAAGGCCATTTGCCATATTaGGCTTTCCTTACCAAACACCTGAACTGGGCTTTTCAGATACAT | + |
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Preference number: 1 (lower is better) Translates to: AAAPSAAKNKGHLPY*AFLTKHLNWAFQIH Trigger: ATGTATCTGAAAAGCCCAGTTCAGGTGTTTGGTAAGGAAAGCCCAATATGGCAAATGGCCTTTGTTTTTAGCAGCTGAGGGAGCAGCTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR GCA 90 bp | ACTGACAGCTGTCCCTACTGTTCCAACTGTAAAAGTATGGAGCTATaGAAACTGTACTTAACCACAGAGGCAAGCTCAGTGGGACCAATT | + |
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Preference number: 1 (lower is better) Translates to: TDSCPYCSNCKSMEL*KLYLTTEASSVGPI Trigger: AATTGGTCCCACTGAGCTTGCCTCTGTGGTTAAGTACAGTTTGCATAGCTCCATACTTTTACAGTTGGAACAGTAGGGACAGCTGTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR GCA 90 bp | TACGTGTTTCAACCCTACACTGCTGATAGATTCTTCCTATGCAGTTaGCTCGTTCTTCATAACTACTCTCCTCTGGGAGGCTTTTTCTGT | + |
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Preference number: 1 (lower is better) Translates to: YVFQPYTADRFFLCS*LVLHNYSPLGGFFC Trigger: ACAGAAAAAGCCTCCCAGAGGAGAGTAGTTATGAAGAACGAGGCAACTGCATAGGAAGAATCTATCAGCAGTGTAGGGTTGAAACACGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR GCA 90 bp | TATAAATACGTGTTTCAACCCTACACTGCTGATAGATTCTTCCTATaGAGTTGCCTCGTTCTTCATAACTACTCTCCTCTGGGAGGCTTT | + |
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Preference number: 1 (lower is better) Translates to: YKYVFQPYTADRFFL*SCLVLHNYSPLGGF Trigger: AAAGCCTCCCAGAGGAGAGTAGTTATGAAGAACGAGGCAACTGCATAGGAAGAATCTATCAGCAGTGTAGGGTTGAAACACGTATTTATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR CAA 90 bp | CATGCCGGAGCAGCTGCTCCCTCAGCTGCTAAAAACAAAGGCCATTaGCCATATTGGGCTTTCCTTACCAAACACCTGAACTGGGCTTTT | + |
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Preference number: 2 (lower is better) Translates to: HAGAAAPSAAKNKGH*PYWAFLTKHLNWAF Trigger: AAAAGCCCAGTTCAGGTGTTTGGTAAGGAAAGCCCAATATGGCAAATGGCCTTTGTTTTTAGCAGCTGAGGGAGCAGCTGCTCCGGCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR-3UTR TCA 90 bp | TTCAGATCACTAAGGTGGTTTCCTGTTCGAAATCTGCTGAACAGAAAACATATCTGGGTGGAAAAGCACTaGCAGCTGTCCCTACTGTTC | + |
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Preference number: 2 (lower is better) Translates to: FRSLRWFPVRNLLNRKHIWVEKH*QLSLLF Trigger: GAACAGTAGGGACAGCTGTCAGTGCTTTTCCACCCA...GATATGTTTTCTGTTCAGCAGATTTCGAACAGGAAACCACCTTAGTGATCTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR-3UTR TCA 90 bp | AGCACTGACAGCTGTCCCTACTGTTCCAACTGTAAAAGTATGGAGCTATGCAAACACATTTGGCTGGGTTaGAACTTTAAAATGAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: STDSCPYCSNCKSMELCKHIWLG*NFKMSL Trigger: CAGGCTCATTTTAAAGTTTCAACCCAGCCAAATGTG...TTTGCATAGCTCCATACTTTTACAGTTGGAACAGTAGGGACAGCTGTCAGTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR-3UTR CCA 90 bp | TGTACTCTCTACCTCATTAGGATCACTCAAGACAACACTCAACACAGGAGAGAAATAACTACTCTCCTCTaGGAGGCTTTTTCTGTCTGT | + |
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Preference number: 2 (lower is better) Translates to: CTLYLIRITQDNTQHRREITTLL*EAFSVC Trigger: ACAGACAGAAAAAGCCTCCCAGAGGAGAGTAGTTAT...TTCTCTCCTGTGTTGAGTGTTGTCTTGAGTGATCCTAATGAGGTAGAGAGTACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR CAA 90 bp | ACATGTTCAAGTTCATTTCTAACTGCAACCTCTTTACTAACACTCTaGCAATCATCTTCTTTTCATAGAATCACCTCTGGGCTCAGCCAC | + |
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Preference number: 2 (lower is better) Translates to: TCSSSFLTATSLLTL*QSSSFHRITSGLSH Trigger: GTGGCTGAGCCCAGAGGTGATTCTATGAAAAGAAGATGATTGCAAGAGTGTTAGTAAAGAGGTTGCAGTTAGAAATGAACTTGAACATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR-3UTR GCA 90 bp | AACTACTCTCCTCTGGGAGGCTTTTTCTGTCTGTTTACAAAGCTAAGCTTAAGCCGGGAAGAGATGAGATaGAATTCAACATGTATAAAA | + |
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Preference number: 2 (lower is better) Translates to: NYSPLGGFFCLFTKLSLSREEMR*NSTCIK Trigger: TTTTATACATGTTGAATTGCATCTCATCTCTTCCCG...GCTTAAGCTTAGCTTTGTAAACAGACAGAAAAAGCCTCCCAGAGGAGAGTAGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR-3UTR GCA 90 bp | GCAAGCATGATTGGGCTTTGTAAAAGAAATGGGATACAATTATACCACTCTGCTGATAGATTCTTCCTATaGAGTTGCCTCGTTCTTCAT | + |
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Preference number: 2 (lower is better) Translates to: ASMIGLCKRNGIQLYHSADRFFL*SCLVLH Trigger: ATGAAGAACGAGGCAACTGCATAGGAAGAATCTATC...AGCAGAGTGGTATAATTGTATCCCATTTCTTTTACAAAGCCCAATCATGCTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR GCA 72 bp | CAACCCTACACTGCTGATAGATTCTTCCTATGCAGTTaGCTCGTTCTTCATAACTACTCTCCTCTGGGAGGC | + |
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Preference number: 3 (lower is better) Translates to: QPYTADRFFLCS*LVLHNYSPLGG Trigger: GCCTCCCAGAGGAGAGTAGTTATGAAGAACGAGGCAACTGCATAGGAAGAATCTATCAGCAGTGTAGGGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR-3UTR CAA 90 bp | AGCACTGACAGCTGTCCCTACTGTTCCAACTGTAAAAGTATGGAGCTATGCAAAGTTCTTCCTCTTCATTaGGAGAAAGCTGCTACTCAC | + |
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Preference number: 3 (lower is better) Translates to: STDSCPYCSNCKSMELCKVLPLH*EKAATH Trigger: GTGAGTAGCAGCTTTCTCCAAATGAAGAGGAAGAAC...TTTGCATAGCTCCATACTTTTACAGTTGGAACAGTAGGGACAGCTGTCAGTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR TCA 72 bp | AGCATTGGCAGTCTCGCAGTAAGGTACGCAGGCTTGTaGCTGAAAGCAAAAGAAGCTTTTGAAATCGATGTT | + |
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Preference number: 3 (lower is better) Translates to: SIGSLAVRYAGL*LKAKEAFEIDV Trigger: AACATCGATTTCAAAAGCTTCTTTTGCTTTCAGTCACAAGCCTGCGTACCTTACTGCGAGACTGCCAATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR GCA 72 bp | GTGTTTCAACCCTACACTGCTGATAGATTCTTCCTATaGAGTTGCCTCGTTCTTCATAACTACTCTCCTCTG | + |
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Preference number: 3 (lower is better) Translates to: VFQPYTADRFFL*SCLVLHNYSPL Trigger: CAGAGGAGAGTAGTTATGAAGAACGAGGCAACTGCATAGGAAGAATCTATCAGCAGTGTAGGGTTGAAACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR GCA 72 bp | AAGCTGTTACTTTCCTTTCAGCATGAGCACAGTAAATaGAATAGGGCCAGACACAAAAGCACACAGTTGTCT | + |
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Preference number: 3 (lower is better) Translates to: KLLLSFQHEHSK*NRARHKSTQLS Trigger: AGACAACTGTGTGCTTTTGTGTCTGGCCCTATTGCATTTACTGTGCTCATGCTGAAAGGAAAGTAACAGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR TCA 72 bp | GCCATTTGCCATATTGGGCTTTCCTTACCAAACACCTaGACTGGGCTTTTCAGATACATAAATGTCAGTGTT | + |
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Preference number: 3 (lower is better) Translates to: AICHIGLSLPNT*TGLFRYINVSV Trigger: AACACTGACATTTATGTATCTGAAAAGCCCAGTTCAGGTGTTTGGTAAGGAAAGCCCAATATGGCAAATGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR TCA 72 bp | GTACGCAGGCTTGTGACTGAAAGCAAAAGAAGCTTTTaGAATCGATGTTTGCTACAATCAAAGGTCACAGCT | + |
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Preference number: 3 (lower is better) Translates to: VRRLVTESKRSF*NRCLLQSKVTA Trigger: AGCTGTGACCTTTGATTGTAGCAAACATCGATTTCAAAAGCTTCTTTTGCTTTCAGTCACAAGCCTGCGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR CCA 72 bp | TTAGCTCCTCAAAGTCCAATTCTTCACAGGAATAACTaGCTAGAAAGACCACTGAAGAGCTGTAAAACAATT | + |
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Preference number: 3 (lower is better) Translates to: LAPQSPILHRNN*LERPLKSCKTI Trigger: AATTGTTTTACAGCTCTTCAGTGGTCTTTCTAGCCAGTTATTCCTGTGAAGAATTGGACTTTGAGGAGCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR GCA 72 bp | TATAAGAGAATGCCCATGAGTAAGTCACAACTGCCTTaGATGAACACAAAGGATACAATTCAGAATTCTTAT | + |
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Preference number: 3 (lower is better) Translates to: YKRMPMSKSQLP*MNTKDTIQNSY Trigger: ATAAGAATTCTGAATTGTATCCTTTGTGTTCATGCAAGGCAGTTGTGACTTACTCATGGGCATTCTCTTATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| CDS-3UTR GCA 90 bp | AACTACTCTCCTCTGGGAGGCTTTTTCTGTCTGTTTACAAAGCTAAGCTTAAGCATGATCCGCGAGACGTaGAGCCGCACTGGGACGCTC | + |
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Preference number: 4 (lower is better) Translates to: NYSPLGGFFCLFTKLSLSMIRET*SRTGTL Trigger: GAGCGTCCCAGTGCGGCTGCACGTCTCGCGGATCAT...GCTTAAGCTTAGCTTTGTAAACAGACAGAAAAAGCCTCCCAGAGGAGAGTAGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR CAA 72 bp | GCAGCTGCTCCCTCAGCTGCTAAAAACAAAGGCCATTaGCCATATTGGGCTTTCCTTACCAAACACCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: AAAPSAAKNKGH*PYWAFLTKHLN Trigger: GTTCAGGTGTTTGGTAAGGAAAGCCCAATATGGCAAATGGCCTTTGTTTTTAGCAGCTGAGGGAGCAGCTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| CDS-3UTR CCA 90 bp | GCAAGCATGATTGGGCTTTGTAAAAGAAATGGGATACAATTATACCACTCTGCTGACGTGCAGCCGCACTaGGACGCTCCTGTCTTTGAA | + |
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Preference number: 4 (lower is better) Translates to: ASMIGLCKRNGIQLYHSADVQPH*DAPVFE Trigger: TTCAAAGACAGGAGCGTCCCAGTGCGGCTGCACGTC...AGCAGAGTGGTATAATTGTATCCCATTTCTTTTACAAAGCCCAATCATGCTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| 3UTR CAA 72 bp | GATTTTTCAGCATACAAACAGGTTCTTCCTCTTCATTaGGAGAAAGCTGCTACTCACCTAAGGAAAGCAAGC | + |
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Preference number: 4 (lower is better) Translates to: DFSAYKQVLPLH*EKAATHLRKAS Trigger: GCTTGCTTTCCTTAGGTGAGTAGCAGCTTTCTCCAAATGAAGAGGAAGAACCTGTTTGTATGCTGAAAAATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| CDS-3UTR CCA 90 bp | GCAAGCATGATTGGGCTTTGTAAAAGAAATGGGATACAATTATACCACTCTGCTGTATGTATCTGGAAATaGCACAGACACATGTCCCGA | + |
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Preference number: 4 (lower is better) Translates to: ASMIGLCKRNGIQLYHSAVCIWK*HRHMSR Trigger: TCGGGACATGTGTCTGTGCCATTTCCAGATACATAC...AGCAGAGTGGTATAATTGTATCCCATTTCTTTTACAAAGCCCAATCATGCTTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| CDS-3UTR CAA 90 bp | TGTACTCTCTACCTCATTAGGATCACTCAAGACAACACTCAACACAGGAGAGAAGGGACGCTCCTGTCTTaGAAGGCGGTGGTGATGAAG | + |
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Preference number: 5 (lower is better) Translates to: CTLYLIRITQDNTQHRREGTLLS*KAVVMK Trigger: CTTCATCACCACCGCCTTCAAAGACAGGAGCGTCCC...TTCTCTCCTGTGTTGAGTGTTGTCTTGAGTGATCCTAATGAGGTAGAGAGTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| CDS-3UTR CAA 90 bp | TGTACTCTCTACCTCATTAGGATCACTCAAGACAACACTCAACACAGGAGAGAAGTAGAATTCCAGCGTTaGGTACAACGTTCCAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: CTLYLIRITQDNTQHRREVEFQR*VQRSRR Trigger: TCTCCTGGAACGTTGTACCAAACGCTGGAATTCTAC...TTCTCTCCTGTGTTGAGTGTTGTCTTGAGTGATCCTAATGAGGTAGAGAGTACA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| CDS-3UTR CAA 90 bp | TTCAGATCACTAAGGTGGTTTCCTGTTCGAAATCTGCTGAACAGAAAACATATCACATTCCTGTTTCCCTaGAGGCCATTTCCATCGTCA | + |
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Preference number: 5 (lower is better) Translates to: FRSLRWFPVRNLLNRKHITFLFP*RPFPSS Trigger: TGACGATGGAAATGGCCTCAAGGGAAACAGGAATGT...GATATGTTTTCTGTTCAGCAGATTTCGAACAGGAAACCACCTTAGTGATCTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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| CDS CAA 72 bp | CGCGAGACGTGCAGCCGCACTGGGACGCTCCTGTCTTaGAAGGCGGTGGTGATGAAGCAGCCGAAGGTGAGC | + |
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Preference number: 6 (lower is better) Translates to: RETCSRTGTLLS*KAVVMKQPKVS Trigger: GCTCACCTTCGGCTGCTTCATCACCACCGCCTTCAAAGACAGGAGCGTCCCAGTGCGGCTGCACGTCTCGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067476.9 |
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