Pregenerated sensors for SPCS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021917Ensembl transcript IDs: ENSMUST00000186131.7, ENSMUST00000226374.2, ENSMUST00000226782.2, ENSMUST00000228736.2, ENSMUST00000228767.2
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CACACGGGAAAGAAGCATTGCATACTTGTATCTCCTGTTCTCCATAACAAGCTTCTCATGTTTTGCTTATaGAAGCAATTCAGCTCATCT | + |
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Preference number: 2 (lower is better) Translates to: HTGKKHCILVSPVLHNKLLMFCL*KQFSSS Trigger: AGATGAGCTGAATTGCTTTCATAAGCAAAACATGAG...AAGCTTGTTATGGAGAACAGGAGATACAAGTATGCAATGCTTCTTTCCCGTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 ENSMUST00000228767.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGTGTTTATTCATTATACACACGGGAAAGAAGCATTGCATACTTGTATCTCCTCTGTGCCTAAGTCTTaGACAGGTAACCACTTTAGG | + |
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Preference number: 2 (lower is better) Translates to: EVFIHYTHGKEALHTCISSVPKS*TGNHFR Trigger: CCTAAAGTGGTTACCTGTTCAAGACTTAGGCACAGA...GGAGATACAAGTATGCAATGCTTCTTTCCCGTGTGTATAATGAATAAACACTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228767.2 |
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| 3UTR-3UTR TCA 90 bp | AAATACATTTGGATTAGAAATGAAGCCATGACAATTAGATCTCGACACAGCTGTCTCATGTTTTGCTTATaGAAGCAATTCAGCTCATCT | + |
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Preference number: 2 (lower is better) Translates to: KYIWIRNEAMTIRSRHSCLMFCL*KQFSSS Trigger: AGATGAGCTGAATTGCTTTCATAAGCAAAACATGAG...ACAGCTGTGTCGAGATCTAATTGTCATGGCTTCATTTCTAATCCAAATGTATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 ENSMUST00000228767.2 |
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| 3UTR-3UTR CAA 90 bp | GTGTTTATTCATTATACACACGGGAAAGAAGCATTGCATACTTGTATCTCCTGTCTGTCCCCTGATTTCTaGTCTTCTGTGCCTAAGTCT | + |
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Preference number: 3 (lower is better) Translates to: VFIHYTHGKEALHTCISCLSPDF*SSVPKS Trigger: AGACTTAGGCACAGAAGACAAGAAATCAGGGGACAG...ACAGGAGATACAAGTATGCAATGCTTCTTTCCCGTGTGTATAATGAATAAACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228767.2 |
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| 3UTR-3UTR CAA 90 bp | TTATACACACGGGAAAGAAGCATTGCATACTTGTATCTCCTGTTCTCCATAACAAGAAGCATTGCATACTaGTATCTCCTGTTCTCCATA | + |
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Preference number: 3 (lower is better) Translates to: LYTRERSIAYLYLLFSITRSIAY*YLLFSI Trigger: TATGGAGAACAGGAGATACAAGTATGCAATGCTTCT...TGTTATGGAGAACAGGAGATACAAGTATGCAATGCTTCTTTCCCGTGTGTATAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 ENSMUST00000228767.2 |
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| 3UTR GCA 72 bp | AAGTGTTTATTCATTATACACACGGGAAAGAAGCATTaGATACTTGTATCTCCTGTTCTCCATAACAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: KCLFIIHTGKKH*ILVSPVLHNKL Trigger: AAGCTTGTTATGGAGAACAGGAGATACAAGTATGCAATGCTTCTTTCCCGTGTGTATAATGAATAAACACTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 ENSMUST00000228767.2 |
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| CDS-3UTR TCA 90 bp | AAATATGAAGGCTGCGTGAGCAAAGCGAAGCCCCTGGCATATTCATTTTACTGCTCCAACCAAGTCTCCTaGGTCAGAAAACTTACGCTA | + |
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Preference number: 4 (lower is better) Translates to: KYEGCVSKAKPLAYSFYCSNQVS*VRKLTL Trigger: TAGCGTAAGTTTTCTGACTCAGGAGACTTGGTTGGA...GCAGTAAAATGAATATGCCAGGGGCTTCGCTTTGCTCACGCAGCCTTCATATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000226374.2 |
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| CDS-3UTR TCA 90 bp | AAATATGAAGGCTGCGTGAGCAAAGCGAAGCCCCTGGCATATTCATTTTACTGCAGACGAACAAAGAGGTaGTTCTGGTTCTCACTGGTA | + |
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Preference number: 4 (lower is better) Translates to: KYEGCVSKAKPLAYSFYCRRTKR*FWFSLV Trigger: TACCAGTGAGAACCAGAATCACCTCTTTGTTCGTCT...GCAGTAAAATGAATATGCCAGGGGCTTCGCTTTGCTCACGCAGCCTTCATATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226374.2 |
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| CDS-3UTR TCA 90 bp | AAATATGAAGGCTGCGTGAGCAAAGCGAAGCCCCTGGCATATTCATTTTACTGCAAAAGAATGATCCCCTaGAACATCTGTTCAGCTAGT | + |
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Preference number: 4 (lower is better) Translates to: KYEGCVSKAKPLAYSFYCKRMIP*NICSAS Trigger: ACTAGCTGAACAGATGTTTCAGGGGATCATTCTTTT...GCAGTAAAATGAATATGCCAGGGGCTTCGCTTTGCTCACGCAGCCTTCATATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000226374.2 |
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| CDS-3UTR TCA 90 bp | ATCTCGACACAGCTGTGCTATAAGAACATAGGCGGTTTAAGCTCATGTTTTGCTTCTGTGCCTAAGTCTTaGACAGGTAACCACTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: ISTQLCYKNIGGLSSCFASVPKS*TGNHFR Trigger: CCTAAAGTGGTTACCTGTTCAAGACTTAGGCACAGA...AGCAAAACATGAGCTTAAACCGCCTATGTTCTTATAGCACAGCTGTGTCGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 |
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| CDS-3UTR CCA 90 bp | GGAAAGAAGCATTGCATACTTGTATCTCCTGTTCTCCATAACAAGCTTATGAAGGCGGTAGATAGGCCATaGAGGAAGTGTCAGCAAACA | + |
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Preference number: 4 (lower is better) Translates to: GKKHCILVSPVLHNKLMKAVDRP*RKCQQT Trigger: TGTTTGCTGACACTTCCTCCATGGCCTATCTACCGC...CTTCATAAGCTTGTTATGGAGAACAGGAGATACAAGTATGCAATGCTTCTTTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 |
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| CDS-3UTR TCA 90 bp | ACACAGCTGTGCTATAAGAACATAGGCGGTTTAAGCTCATGTTTTGCTTATGAATCTGTGCCTAAGTCTTaGACAGGTAACCACTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: TQLCYKNIGGLSSCFAYESVPKS*TGNHFR Trigger: CCTAAAGTGGTTACCTGTTCAAGACTTAGGCACAGA...TTCATAAGCAAAACATGAGCTTAAACCGCCTATGTTCTTATAGCACAGCTGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 |
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| CDS-3UTR CCA 90 bp | TTTATTCATTATACACACGGGAAAGAAGCATTGCATACTTGTATCTCCTGTTCTGCGGTAGATAGGCCATaGAGGAAGTGTCAGCAAACA | + |
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Preference number: 4 (lower is better) Translates to: FIHYTHGKEALHTCISCSAVDRP*RKCQQT Trigger: TGTTTGCTGACACTTCCTCCATGGCCTATCTACCGC...AGAACAGGAGATACAAGTATGCAATGCTTCTTTCCCGTGTGTATAATGAATAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 |
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| CDS-3UTR TCA 90 bp | TCGACACAGCTGTGCTATAAGAACATAGGCGGTTTAAGCTCATGTTTTGCTTATAAAAGAATGATCCCCTaGAACATCTGTTCAGCTAGT | + |
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Preference number: 4 (lower is better) Translates to: STQLCYKNIGGLSSCFAYKRMIP*NICSAS Trigger: ACTAGCTGAACAGATGTTTCAGGGGATCATTCTTTT...ATAAGCAAAACATGAGCTTAAACCGCCTATGTTCTTATAGCACAGCTGTGTCGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 ENSMUST00000228767.2 |
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| CDS-3UTR GCA 90 bp | ACACGGGAAAGAAGCATTGCATACTTGTATCTCCTGTTCTCCATAACAAGCTTAATTTCTTGTCTTCTGTaGCTAAGTCTTGAACAGGTA | + |
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Preference number: 4 (lower is better) Translates to: TRERSIAYLYLLFSITSLISCLL*LSLEQV Trigger: TACCTGTTCAAGACTTAGGCACAGAAGACAAGAAAT...TAAGCTTGTTATGGAGAACAGGAGATACAAGTATGCAATGCTTCTTTCCCGTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 |
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| CDS-3UTR TCA 90 bp | AGTGTTTATTCATTATACACACGGGAAAGAAGCATTGCATACTTGTATCTCCTGAAAAGAATGATCCCCTaGAACATCTGTTCAGCTAGT | + |
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Preference number: 4 (lower is better) Translates to: SVYSLYTRERSIAYLYLLKRMIP*NICSAS Trigger: ACTAGCTGAACAGATGTTTCAGGGGATCATTCTTTT...CAGGAGATACAAGTATGCAATGCTTCTTTCCCGTGTGTATAATGAATAAACACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 ENSMUST00000228767.2 |
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| CDS-3UTR TCA 90 bp | TATAAGAACATAGGCGGTTTAAGCTCATGTTTTGCTTATGAAAGCAATTCAGCTAAAAGAATGATCCCCTaGAACATCTGTTCAGCTAGT | + |
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Preference number: 4 (lower is better) Translates to: YKNIGGLSSCFAYESNSAKRMIP*NICSAS Trigger: ACTAGCTGAACAGATGTTTCAGGGGATCATTCTTTT...AGCTGAATTGCTTTCATAAGCAAAACATGAGCTTAAACCGCCTATGTTCTTATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 ENSMUST00000228767.2 |
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| CDS-3UTR TCA 90 bp | TGCTATAAGAACATAGGCGGTTTAAGCTCATGTTTTGCTTATGAAAGCAATTCAAAAAGAATGATCCCCTaGAACATCTGTTCAGCTAGT | + |
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Preference number: 4 (lower is better) Translates to: CYKNIGGLSSCFAYESNSKRMIP*NICSAS Trigger: ACTAGCTGAACAGATGTTTCAGGGGATCATTCTTTT...TGAATTGCTTTCATAAGCAAAACATGAGCTTAAACCGCCTATGTTCTTATAGCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 ENSMUST00000228767.2 |
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| CDS-3UTR GCA 90 bp | TGCTATAAGAACATAGGCGGTTTAAGCTCATGTTTTGCTTATGAAAGCAATTCAATTTCTTGTCTTCTGTaGCTAAGTCTTGAACAGGTA | + |
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Preference number: 4 (lower is better) Translates to: CYKNIGGLSSCFAYESNSISCLL*LSLEQV Trigger: TACCTGTTCAAGACTTAGGCACAGAAGACAAGAAAT...TGAATTGCTTTCATAAGCAAAACATGAGCTTAAACCGCCTATGTTCTTATAGCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 |
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| CDS CCA 90 bp | CCTTGTAATCCATCTGGGTGGGCAGCGAACTCAGGTGTTCCAGCATaGTTGCTGAAGACCGATACCGACAACGAAACGGACGTAGCCGAT | + |
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Preference number: 5 (lower is better) Translates to: PCNPSGWAANSGVPA*LLKTDTDNETDVAD Trigger: ATCGGCTACGTCCGTTTCGTTGTCGGTATCGGTCTTCAGCAACCATGCTGGAACACCTGAGTTCGCTGCCCACCCAGATGGATTACAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228767.2 |
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| CDS TCA 90 bp | AAAGAGGTGATTCTGGTTCTCACTGGTAGGTCCAACCAAGTCTCCTaGGTCAGAAAACTTACGCTACTGCTAATACGCAAATACCACAAA | + |
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Preference number: 5 (lower is better) Translates to: KEVILVLTGRSNQVS*VRKLTLLLIRKYHK Trigger: TTTGTGGTATTTGCGTATTAGCAGTAGCGTAAGTTTTCTGACTCAGGAGACTTGGTTGGACCTACCAGTGAGAACCAGAATCACCTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226374.2 |
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| CDS-3UTR CAA 90 bp | TTATACACACGGGAAAGAAGCATTGCATACTTGTATCTCCTGTTCTCCATAACACTGTCCCCTGATTTCTaGTCTTCTGTGCCTAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: LYTRERSIAYLYLLFSITLSPDF*SSVPKS Trigger: AGACTTAGGCACAGAAGACAAGAAATCAGGGGACAG...TGTTATGGAGAACAGGAGATACAAGTATGCAATGCTTCTTTCCCGTGTGTATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 |
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| CDS-3UTR CAA 90 bp | CTGTGCTATAAGAACATAGGCGGTTTAAGCTCATGTTTTGCTTATGAAAGCAATCTGTCCCCTGATTTCTaGTCTTCTGTGCCTAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: LCYKNIGGLSSCFAYESNLSPDF*SSVPKS Trigger: AGACTTAGGCACAGAAGACAAGAAATCAGGGGACAG...ATTGCTTTCATAAGCAAAACATGAGCTTAAACCGCCTATGTTCTTATAGCACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 |
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| CDS-3UTR CAA 90 bp | AAATACATTTGGATTAGAAATGAAGCCATGACAATTAGATCTCGACACAGCTGTCTGTCCCCTGATTTCTaGTCTTCTGTGCCTAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: KYIWIRNEAMTIRSRHSCLSPDF*SSVPKS Trigger: AGACTTAGGCACAGAAGACAAGAAATCAGGGGACAG...ACAGCTGTGTCGAGATCTAATTGTCATGGCTTCATTTCTAATCCAAATGTATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228736.2 |
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| CDS CCA 72 bp | AGCAAGGCCGACCAGCCGAGCGTTTCACTTCGGCCGTaGCCCCGGAAGCGGATGTCTCCGAGGGGCACGGAC | + |
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Preference number: 6 (lower is better) Translates to: SKADQPSVSLRP*PRKRMSPRGTD Trigger: GTCCGTGCCCCTCGGAGACATCCGCTTCCGGGGCCACGGCCGAAGTGAAACGCTCGGCTGGTCGGCCTTGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228767.2 |
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| CDS CCA 72 bp | CCATCTGGGTGGGCAGCGAACTCAGGTGTTCCAGCATaGTTGCTGAAGACCGATACCGACAACGAAACGGAC | + |
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Preference number: 6 (lower is better) Translates to: PSGWAANSGVPA*LLKTDTDNETD Trigger: GTCCGTTTCGTTGTCGGTATCGGTCTTCAGCAACCATGCTGGAACACCTGAGTTCGCTGCCCACCCAGATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228767.2 |
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| CDS CAA 72 bp | TCTGGGTGGGCAGCGAACTCAGGTGTTCCAGCATGGTaGCTGAAGACCGATACCGACAACGAAACGGACGTA | + |
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Preference number: 6 (lower is better) Translates to: SGWAANSGVPAW*LKTDTDNETDV Trigger: TACGTCCGTTTCGTTGTCGGTATCGGTCTTCAGCAACCATGCTGGAACACCTGAGTTCGCTGCCCACCCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228767.2 |
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| CDS CAA 90 bp | TGTAATCCATCTGGGTGGGCAGCGAACTCAGGTGTTCCAGCATGGTaGCTGAAGACCGATACCGACAACGAAACGGACGTAGCCGATTAT | + |
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Preference number: 6 (lower is better) Translates to: CNPSGWAANSGVPAW*LKTDTDNETDVADY Trigger: ATAATCGGCTACGTCCGTTTCGTTGTCGGTATCGGTCTTCAGCAACCATGCTGGAACACCTGAGTTCGCTGCCCACCCAGATGGATTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000186131.7 ENSMUST00000226782.2 ENSMUST00000228767.2 |
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| CDS TCA 72 bp | ATTCTGGTTCTCACTGGTAGGTCCAACCAAGTCTCCTaGGTCAGAAAACTTACGCTACTGCTAATACGCAAA | + |
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Preference number: 6 (lower is better) Translates to: ILVLTGRSNQVS*VRKLTLLLIRK Trigger: TTTGCGTATTAGCAGTAGCGTAAGTTTTCTGACTCAGGAGACTTGGTTGGACCTACCAGTGAGAACCAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226374.2 |
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