RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPC25 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005233

Ensembl transcript IDs: ENSMUST00000005365.15, ENSMUST00000112320.8, ENSMUST00000127243.8, ENSMUST00000149045.8, ENSMUST00000149643.2, ENSMUST00000167875.9

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp CACGTCTGCTGTGGTAAGCGACTAACTTCTATCTTTCTTTGTGGGTACAGAGCTTACCTCAAAGAGGCATaGTTTGGGATGATATATTCT +
Preference number: 2 (lower is better)
Translates to: HVCCGKRLTSIFLCGYRAYLKEA*FGMIYS
Trigger: AGAATATATCATCCCAAACCATGCCTCTTTGAGGTA...AGCTCTGTACCCACAAAGAAAGATAGAAGTTAGTCGCTTACCACAGCAGACGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
3UTR-3UTR CCA 90 bp CCAAACAGTGGCCTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTGACTTCCACAGATaGGGAATTGTGAAGAATATA +
Preference number: 2 (lower is better)
Translates to: PNSGLVRFTQHLQQRTVGFDFHR*GIVKNI
Trigger: TATATTCTTCACAATTCCCCATCTGTGGAAGTCAAA...TCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAGGCCACTGTTTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
3UTR-3UTR TCA 90 bp CTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGGACAGGGACAAGAGATaGGAATTCCTCTGGATATAT +
Preference number: 2 (lower is better)
Translates to: LVRFTQHLQQRTVGFYNMDRDKR*EFLWIY
Trigger: ATATATCCAGAGGAATTCTCATCTCTTGTCCCTGTC...CATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
3UTR-3UTR TCA 90 bp TACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATAAGACAGACGACAGGGACAAGAGATaGGAATTCCTCTGGATATAT +
Preference number: 2 (lower is better)
Translates to: YTASSTENSRILQHDKTDDRDKR*EFLWIY
Trigger: ATATATCCAGAGGAATTCTCATCTCTTGTCCCTGTC...GTCTGTCTTATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
3UTR-3UTR TCA 90 bp AGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATGACAGGGACAAGAGATaGGAATTCCTCTGGATATAT +
Preference number: 2 (lower is better)
Translates to: SQVYTASSTENSRILQHDDRDKR*EFLWIY
Trigger: ATATATCCAGAGGAATTCTCATCTCTTGTCCCTGTC...ATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
3UTR-3UTR CCA 90 bp TACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATAAGACAGACTACCTCAAAGAGGCATaGTTTGGGATGATATATTCT +
Preference number: 2 (lower is better)
Translates to: YTASSTENSRILQHDKTDYLKEA*FGMIYS
Trigger: AGAATATATCATCCCAAACCATGCCTCTTTGAGGTA...GTCTGTCTTATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
3UTR-3UTR CCA 90 bp AGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATTACCTCAAAGAGGCATaGTTTGGGATGATATATTCT +
Preference number: 2 (lower is better)
Translates to: SQVYTASSTENSRILQHDYLKEA*FGMIYS
Trigger: AGAATATATCATCCCAAACCATGCCTCTTTGAGGTA...ATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
3UTR-3UTR CCA 90 bp AGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATTTTGACTTCCACAGATaGGGAATTGTGAAGAATATA +
Preference number: 2 (lower is better)
Translates to: SQVYTASSTENSRILQHDFDFHR*GIVKNI
Trigger: TATATTCTTCACAATTCCCCATCTGTGGAAGTCAAA...ATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
3UTR-3UTR CAA 90 bp GCAAGTTTATTAACACAAGCAGAGCCTACAATACAGGAGAACCCCAACAGAAGGATAAGACAGACAGATTaGCCTTTTGACTTCCACAGA +
Preference number: 3 (lower is better)
Translates to: ASLLTQAEPTIQENPNRRIRQTD*PFDFHR
Trigger: TCTGTGGAAGTCAAAAGGCAAATCTGTCTGTCTTAT...CCTTCTGTTGGGGTTCTCCTGTATTGTAGGCTCTGCTTGTGTTAATAAACTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
3UTR-3UTR CAA 90 bp AGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATAGACAGATTTGCCTTTaGACTTCCACAGATGGGGAA +
Preference number: 3 (lower is better)
Translates to: SQVYTASSTENSRILQHDRQICL*TSTDGE
Trigger: TTCCCCATCTGTGGAAGTCAAAAGGCAAATCTGTCT...ATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
3UTR TCA 72 bp CTCACAAATGTTACCTCAAAGAGGCATGGTTTGGGATaGTATATTCTAGTTTCTTTAATACCACACAGAAAG +
Preference number: 3 (lower is better)
Translates to: LTNVTSKRHGLG*YILVSLIPHRK
Trigger: CTTTCTGTGTGGTATTAAAGAAACTAGAATATATCATCCCAAACCATGCCTCTTTGAGGTAACATTTGTGAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR GCA 90 bp CCAAACAGTGGCCTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGAAGCTCTTCCGACTCTTaGTCCTTGCCTTTTACTTCA +
Preference number: 4 (lower is better)
Translates to: PNSGLVRFTQHLQQRTVGSSSDS*SLPFTS
Trigger: TGAAGTAAAAGGCAAGGAGCAAGAGTCGGAAGAGCT...TCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAGGCCACTGTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR TCA 90 bp GCAAGTTTATTAACACAAGCAGAGCCTACAATACAGGAGAACCCCAACAGAAGGTTCCTGACTTTCTCCTaGAATTCTGCTAGGCACTCA +
Preference number: 4 (lower is better)
Translates to: ASLLTQAEPTIQENPNRRFLTFS*NSARHS
Trigger: TGAGTGCCTAGCAGAATTTCAGGAGAAAGTCAGGAA...CCTTCTGTTGGGGTTCTCCTGTATTGTAGGCTCTGCTTGTGTTAATAAACTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR GCA 90 bp GCAAGTTTATTAACACAAGCAGAGCCTACAATACAGGAGAACCCCAACAGAAGGCCGACTCTTGCTCCTTaGCTTTTACTTCAGCAATCA +
Preference number: 4 (lower is better)
Translates to: ASLLTQAEPTIQENPNRRPTLAP*LLLQQS
Trigger: TGATTGCTGAAGTAAAAGGCAAGGAGCAAGAGTCGG...CCTTCTGTTGGGGTTCTCCTGTATTGTAGGCTCTGCTTGTGTTAATAAACTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR GCA 90 bp CCAAACAGTGGCCTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGAAGATCCGCTGATTTCTaGAGTCCTTTCAATCTCTCT +
Preference number: 4 (lower is better)
Translates to: PNSGLVRFTQHLQQRTVGRSADF*SPFNLS
Trigger: AGAGAGATTGAAAGGACTGCAGAAATCAGCGGATCT...TCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAGGCCACTGTTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR TCA 90 bp CCAAACAGTGGCCTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGAAATTGTTGGTCTTCCTaGCTTTCTCCTGAAATTCTG +
Preference number: 4 (lower is better)
Translates to: PNSGLVRFTQHLQQRTVGNCWSS*LSPEIL
Trigger: CAGAATTTCAGGAGAAAGTCAGGAAGACCAACAATT...TCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAGGCCACTGTTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR GCA 90 bp GCAAGTTTATTAACACAAGCAGAGCCTACAATACAGGAGAACCCCAACAGAAGGAGATCCGCTGATTTCTaGAGTCCTTTCAATCTCTCT +
Preference number: 4 (lower is better)
Translates to: ASLLTQAEPTIQENPNRRRSADF*SPFNLS
Trigger: AGAGAGATTGAAAGGACTGCAGAAATCAGCGGATCT...CCTTCTGTTGGGGTTCTCCTGTATTGTAGGCTCTGCTTGTGTTAATAAACTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp CACGTCTGCTGTGGTAAGCGACTAACTTCTATCTTTCTTTGTGGGTACAGAGCTTTCTGCTTACAGAGCTaGTTTTTATACTCCAGAATC +
Preference number: 4 (lower is better)
Translates to: HVCCGKRLTSIFLCGYRAFCLQS*FLYSRI
Trigger: GATTCTGGAGTATAAAAACCAGCTCTGTAAGCAGAA...AGCTCTGTACCCACAAAGAAAGATAGAAGTTAGTCGCTTACCACAGCAGACGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp ATCTTTCTTTGTGGGTACAGAGCTAGATACCTCTATCATCTAGGTCCCATGTTTTCTTCCTTGAGCTCCTaGATTTTAGCAGTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: IFLCGYRARYLYHLGPMFSSLSS*ILAVSS
Trigger: AGAGCTGACTGCTAAAATCCAGGAGCTCAAGGAAGA...AAACATGGGACCTAGATGATAGAGGTATCTAGCTCTGTACCCACAAAGAAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR TCA 90 bp CTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGTTCCTGACTTTCTCCTaGAATTCTGCTAGGCACTCA +
Preference number: 4 (lower is better)
Translates to: LVRFTQHLQQRTVGFYNMFLTFS*NSARHS
Trigger: TGAGTGCCTAGCAGAATTTCAGGAGAAAGTCAGGAA...CATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp GCAAGTTTATTAACACAAGCAGAGCCTACAATACAGGAGAACCCCAACAGAAGGTTCTGCTTACAGAGCTaGTTTTTATACTCCAGAATC +
Preference number: 4 (lower is better)
Translates to: ASLLTQAEPTIQENPNRRFCLQS*FLYSRI
Trigger: GATTCTGGAGTATAAAAACCAGCTCTGTAAGCAGAA...CCTTCTGTTGGGGTTCTCCTGTATTGTAGGCTCTGCTTGTGTTAATAAACTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp CCAAACAGTGGCCTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGACTTCATTTATGCTCATaGAAAACATATATGGGCTCT +
Preference number: 4 (lower is better)
Translates to: PNSGLVRFTQHLQQRTVGLHLCS*KTYMGS
Trigger: AGAGCCCATATATGTTTTCCATGAGCATAAATGAAG...TCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAGGCCACTGTTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp CACGTCTGCTGTGGTAAGCGACTAACTTCTATCTTTCTTTGTGGGTACAGAGCTAAGCCTTCCGAATATTaGCAAGAAAAGCTGAAAAAT +
Preference number: 4 (lower is better)
Translates to: HVCCGKRLTSIFLCGYRAKPSEY*QEKLKN
Trigger: ATTTTTCAGCTTTTCTTGCCAATATTCGGAAGGCTT...AGCTCTGTACCCACAAAGAAAGATAGAAGTTAGTCGCTTACCACAGCAGACGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR TCA 90 bp GGCAAAGGTTTTCTAACTCTGCTGCTGCTTAACTGTTTTCAGCTCACAAATGTTCAAAGACATCTTTTCTaGAAACGCTTTCATGGAGTC +
Preference number: 4 (lower is better)
Translates to: GKGFLTLLLLNCFQLTNVQRHLF*KRFHGV
Trigger: GACTCCATGAAAGCGTTTTCAGAAAAGATGTCTTTG...AACATTTGTGAGCTGAAAACAGTTAAGCAGCAGCAGAGTTAGAAAACCTTTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
CDS-3UTR TCA 90 bp ATCTTTCTTTGTGGGTACAGAGCTAGATACCTCTATCATCTAGGTCCCATGTTTCAAAGACATCTTTTCTaGAAACGCTTTCATGGAGTC +
Preference number: 4 (lower is better)
Translates to: IFLCGYRARYLYHLGPMFQRHLF*KRFHGV
Trigger: GACTCCATGAAAGCGTTTTCAGAAAAGATGTCTTTG...AAACATGGGACCTAGATGATAGAGGTATCTAGCTCTGTACCCACAAAGAAAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
CDS-3UTR GCA 90 bp AGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATAGCTCTTCCGACTCTTaGTCCTTGCCTTTTACTTCA +
Preference number: 4 (lower is better)
Translates to: SQVYTASSTENSRILQHDSSSDS*SLPFTS
Trigger: TGAAGTAAAAGGCAAGGAGCAAGAGTCGGAAGAGCT...ATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR TCA 90 bp GGACAAGAGATGAGAATTCCTCTGGATATATACAGTAACAAAGAACAAACCTATTTCCTGACTTTCTCCTaGAATTCTGCTAGGCACTCA +
Preference number: 4 (lower is better)
Translates to: GQEMRIPLDIYSNKEQTYFLTFS*NSARHS
Trigger: TGAGTGCCTAGCAGAATTTCAGGAGAAAGTCAGGAA...ATAGGTTTGTTCTTTGTTACTGTATATATCCAGAGGAATTCTCATCTCTTGTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR GCA 90 bp GGACAAGAGATGAGAATTCCTCTGGATATATACAGTAACAAAGAACAAACCTATCCGACTCTTGCTCCTTaGCTTTTACTTCAGCAATCA +
Preference number: 4 (lower is better)
Translates to: GQEMRIPLDIYSNKEQTYPTLAP*LLLQQS
Trigger: TGATTGCTGAAGTAAAAGGCAAGGAGCAAGAGTCGG...ATAGGTTTGTTCTTTGTTACTGTATATATCCAGAGGAATTCTCATCTCTTGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR GCA 90 bp GCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATAAGACAGACAGATTTCCGACTCTTGCTCCTTaGCTTTTACTTCAGCAATCA +
Preference number: 4 (lower is better)
Translates to: ASSTENSRILQHDKTDRFPTLAP*LLLQQS
Trigger: TGATTGCTGAAGTAAAAGGCAAGGAGCAAGAGTCGG...AAATCTGTCTGTCTTATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR GCA 90 bp TACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATAAGACAGACAGATCCGCTGATTTCTaGAGTCCTTTCAATCTCTCT +
Preference number: 4 (lower is better)
Translates to: YTASSTENSRILQHDKTDRSADF*SPFNLS
Trigger: AGAGAGATTGAAAGGACTGCAGAAATCAGCGGATCT...GTCTGTCTTATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR GCA 90 bp AGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATAGATCCGCTGATTTCTaGAGTCCTTTCAATCTCTCT +
Preference number: 4 (lower is better)
Translates to: SQVYTASSTENSRILQHDRSADF*SPFNLS
Trigger: AGAGAGATTGAAAGGACTGCAGAAATCAGCGGATCT...ATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR TCA 90 bp TACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATAAGACAGACAATTGTTGGTCTTCCTaGCTTTCTCCTGAAATTCTG +
Preference number: 4 (lower is better)
Translates to: YTASSTENSRILQHDKTDNCWSS*LSPEIL
Trigger: CAGAATTTCAGGAGAAAGTCAGGAAGACCAACAATT...GTCTGTCTTATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp GGCAAAGGTTTTCTAACTCTGCTGCTGCTTAACTGTTTTCAGCTCACAAATGTTAAGCCTTCCGAATATTaGCAAGAAAAGCTGAAAAAT +
Preference number: 4 (lower is better)
Translates to: GKGFLTLLLLNCFQLTNVKPSEY*QEKLKN
Trigger: ATTTTTCAGCTTTTCTTGCCAATATTCGGAAGGCTT...AACATTTGTGAGCTGAAAACAGTTAAGCAGCAGCAGAGTTAGAAAACCTTTGCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR TCA 90 bp TGTTACCTCAAAGAGGCATGGTTTGGGATGATATATTCTAGTTTCTTTAATACCAATTGTTGGTCTTCCTaGCTTTCTCCTGAAATTCTG +
Preference number: 4 (lower is better)
Translates to: CYLKEAWFGMIYSSFFNTNCWSS*LSPEIL
Trigger: CAGAATTTCAGGAGAAAGTCAGGAAGACCAACAATT...GGTATTAAAGAAACTAGAATATATCATCCCAAACCATGCCTCTTTGAGGTAACA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp AAAGAGAGAAAAATGACAGGGACAAGAGATGAGAATTCCTCTGGATATATACAGTTCTGCTTACAGAGCTaGTTTTTATACTCCAGAATC +
Preference number: 4 (lower is better)
Translates to: KERKMTGTRDENSSGYIQFCLQS*FLYSRI
Trigger: GATTCTGGAGTATAAAAACCAGCTCTGTAAGCAGAA...CTGTATATATCCAGAGGAATTCTCATCTCTTGTCCCTGTCATTTTTCTCTCTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp CTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGAAGCCTTCCGAATATTaGCAAGAAAAGCTGAAAAAT +
Preference number: 4 (lower is better)
Translates to: LVRFTQHLQQRTVGFYNMKPSEY*QEKLKN
Trigger: ATTTTTCAGCTTTTCTTGCCAATATTCGGAAGGCTT...CATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp TGTTACCTCAAAGAGGCATGGTTTGGGATGATATATTCTAGTTTCTTTAATACCTTCTGCTTACAGAGCTaGTTTTTATACTCCAGAATC +
Preference number: 4 (lower is better)
Translates to: CYLKEAWFGMIYSSFFNTFCLQS*FLYSRI
Trigger: GATTCTGGAGTATAAAAACCAGCTCTGTAAGCAGAA...GGTATTAAAGAAACTAGAATATATCATCCCAAACCATGCCTCTTTGAGGTAACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp AGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATCTTCATTTATGCTCATaGAAAACATATATGGGCTCT +
Preference number: 4 (lower is better)
Translates to: SQVYTASSTENSRILQHDLHLCS*KTYMGS
Trigger: AGAGCCCATATATGTTTTCCATGAGCATAAATGAAG...ATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp AAAGAGAGAAAAATGACAGGGACAAGAGATGAGAATTCCTCTGGATATATACAGCTTCATTTATGCTCATaGAAAACATATATGGGCTCT +
Preference number: 4 (lower is better)
Translates to: KERKMTGTRDENSSGYIQLHLCS*KTYMGS
Trigger: AGAGCCCATATATGTTTTCCATGAGCATAAATGAAG...CTGTATATATCCAGAGGAATTCTCATCTCTTGTCCCTGTCATTTTTCTCTCTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp TGTTACCTCAAAGAGGCATGGTTTGGGATGATATATTCTAGTTTCTTTAATACCCTTCATTTATGCTCATaGAAAACATATATGGGCTCT +
Preference number: 4 (lower is better)
Translates to: CYLKEAWFGMIYSSFFNTLHLCS*KTYMGS
Trigger: AGAGCCCATATATGTTTTCCATGAGCATAAATGAAG...GGTATTAAAGAAACTAGAATATATCATCCCAAACCATGCCTCTTTGAGGTAACA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CCA 90 bp TGTTACCTCAAAGAGGCATGGTTTGGGATGATATATTCTAGTTTCTTTAATACCAAGCCTTCCGAATATTaGCAAGAAAAGCTGAAAAAT +
Preference number: 4 (lower is better)
Translates to: CYLKEAWFGMIYSSFFNTKPSEY*QEKLKN
Trigger: ATTTTTCAGCTTTTCTTGCCAATATTCGGAAGGCTT...GGTATTAAAGAAACTAGAATATATCATCCCAAACCATGCCTCTTTGAGGTAACA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp CACGTCTGCTGTGGTAAGCGACTAACTTCTATCTTTCTTTGTGGGTACAGAGCTTCCGACTCTTGCTCCTaGCCTTTTACTTCAGCAATC +
Preference number: 5 (lower is better)
Translates to: HVCCGKRLTSIFLCGYRASDSCS*PFTSAI
Trigger: GATTGCTGAAGTAAAAGGCAAGGAGCAAGAGTCGGA...AGCTCTGTACCCACAAAGAAAGATAGAAGTTAGTCGCTTACCACAGCAGACGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp CCAAACAGTGGCCTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATCCGACTCTTGCTCCTaGCCTTTTACTTCAGCAATC +
Preference number: 5 (lower is better)
Translates to: PNSGLVRFTQHLQQRTVGSDSCS*PFTSAI
Trigger: GATTGCTGAAGTAAAAGGCAAGGAGCAAGAGTCGGA...TCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAGGCCACTGTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS GCA 90 bp TCTTCCTTGAGCTCCTGGATTTTAGCAGTCAGCTCTTCCGACTCTTaGTCCTTGCCTTTTACTTCAGCAATCATCTTCAACACATTCTCT +
Preference number: 5 (lower is better)
Translates to: SSLSSWILAVSSSDS*SLPFTSAIIFNTFS
Trigger: AGAGAATGTGTTGAAGATGATTGCTGAAGTAAAAGGCAAGGAGCAAGAGTCGGAAGAGCTGACTGCTAAAATCCAGGAGCTCAAGGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000149045.8
ENSMUST00000149643.2
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp CACGTCTGCTGTGGTAAGCGACTAACTTCTATCTTTCTTTGTGGGTACAGAGCTCTCTCTTCATTAGCTTaGTTAGCAGTGGAAATGGTT +
Preference number: 5 (lower is better)
Translates to: HVCCGKRLTSIFLCGYRALSSLA*LAVEMV
Trigger: AACCATTTCCACTGCTAACAAAGCTAATGAAGAGAG...AGCTCTGTACCCACAAAGAAAGATAGAAGTTAGTCGCTTACCACAGCAGACGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp AGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATCAGCTCTTCCGACTCTaGCTCCTTGCCTTTTACTTC +
Preference number: 5 (lower is better)
Translates to: SQVYTASSTENSRILQHDQLFRL*LLAFYF
Trigger: GAAGTAAAAGGCAAGGAGCAAGAGTCGGAAGAGCTG...ATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp CTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGCTAGCGTACTCTTCCTaGAGCTCCTGGATTTTAGCA +
Preference number: 5 (lower is better)
Translates to: LVRFTQHLQQRTVGFYNMLAYSS*SSWILA
Trigger: TGCTAAAATCCAGGAGCTCAAGGAAGAGTACGCTAG...CATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp CACGTCTGCTGTGGTAAGCGACTAACTTCTATCTTTCTTTGTGGGTACAGAGCTAAAGCCTTCCGAATATaGGCAAGAAAAGCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: HVCCGKRLTSIFLCGYRAKAFRI*ARKAEK
Trigger: TTTTTCAGCTTTTCTTGCCAATATTCGGAAGGCTTT...AGCTCTGTACCCACAAAGAAAGATAGAAGTTAGTCGCTTACCACAGCAGACGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp AGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATTCCGACTCTTGCTCCTaGCCTTTTACTTCAGCAATC +
Preference number: 5 (lower is better)
Translates to: SQVYTASSTENSRILQHDSDSCS*PFTSAI
Trigger: GATTGCTGAAGTAAAAGGCAAGGAGCAAGAGTCGGA...ATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp AGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATCTAGCGTACTCTTCCTaGAGCTCCTGGATTTTAGCA +
Preference number: 5 (lower is better)
Translates to: SQVYTASSTENSRILQHDLAYSS*SSWILA
Trigger: TGCTAAAATCCAGGAGCTCAAGGAAGAGTACGCTAG...ATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp GGACAAGAGATGAGAATTCCTCTGGATATATACAGTAACAAAGAACAAACCTATTCCGACTCTTGCTCCTaGCCTTTTACTTCAGCAATC +
Preference number: 5 (lower is better)
Translates to: GQEMRIPLDIYSNKEQTYSDSCS*PFTSAI
Trigger: GATTGCTGAAGTAAAAGGCAAGGAGCAAGAGTCGGA...ATAGGTTTGTTCTTTGTTACTGTATATATCCAGAGGAATTCTCATCTCTTGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp GCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATAAGACAGACAGATTTCTAGCGTACTCTTCCTaGAGCTCCTGGATTTTAGCA +
Preference number: 5 (lower is better)
Translates to: ASSTENSRILQHDKTDRFLAYSS*SSWILA
Trigger: TGCTAAAATCCAGGAGCTCAAGGAAGAGTACGCTAG...AAATCTGTCTGTCTTATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp GGCAAAGGTTTTCTAACTCTGCTGCTGCTTAACTGTTTTCAGCTCACAAATGTTAAAGCCTTCCGAATATaGGCAAGAAAAGCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: GKGFLTLLLLNCFQLTNVKAFRI*ARKAEK
Trigger: TTTTTCAGCTTTTCTTGCCAATATTCGGAAGGCTTT...AACATTTGTGAGCTGAAAACAGTTAAGCAGCAGCAGAGTTAGAAAACCTTTGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp AAAGAGAGAAAAATGACAGGGACAAGAGATGAGAATTCCTCTGGATATATACAGCTCTCTTCATTAGCTTaGTTAGCAGTGGAAATGGTT +
Preference number: 5 (lower is better)
Translates to: KERKMTGTRDENSSGYIQLSSLA*LAVEMV
Trigger: AACCATTTCCACTGCTAACAAAGCTAATGAAGAGAG...CTGTATATATCCAGAGGAATTCTCATCTCTTGTCCCTGTCATTTTTCTCTCTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp CTAGTCAGGTTTACACAGCATCTTCAACAGAGAACAGTAGGATTTTACAACATGAAAGCCTTCCGAATATaGGCAAGAAAAGCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: LVRFTQHLQQRTVGFYNMKAFRI*ARKAEK
Trigger: TTTTTCAGCTTTTCTTGCCAATATTCGGAAGGCTTT...CATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGCTGTGTAAACCTGACTAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp GGACAAGAGATGAGAATTCCTCTGGATATATACAGTAACAAAGAACAAACCTATCTCTCTTCATTAGCTTaGTTAGCAGTGGAAATGGTT +
Preference number: 5 (lower is better)
Translates to: GQEMRIPLDIYSNKEQTYLSSLA*LAVEMV
Trigger: AACCATTTCCACTGCTAACAAAGCTAATGAAGAGAG...ATAGGTTTGTTCTTTGTTACTGTATATATCCAGAGGAATTCTCATCTCTTGTCC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp TGTTACCTCAAAGAGGCATGGTTTGGGATGATATATTCTAGTTTCTTTAATACCCTCTCTTCATTAGCTTaGTTAGCAGTGGAAATGGTT +
Preference number: 5 (lower is better)
Translates to: CYLKEAWFGMIYSSFFNTLSSLA*LAVEMV
Trigger: AACCATTTCCACTGCTAACAAAGCTAATGAAGAGAG...GGTATTAAAGAAACTAGAATATATCATCCCAAACCATGCCTCTTTGAGGTAACA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS-3UTR CAA 90 bp GCATCTTCAACAGAGAACAGTAGGATTTTACAACATGATAAGACAGACAGATTTAAAGCCTTCCGAATATaGGCAAGAAAAGCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: ASSTENSRILQHDKTDRFKAFRI*ARKAEK
Trigger: TTTTTCAGCTTTTCTTGCCAATATTCGGAAGGCTTT...AAATCTGTCTGTCTTATCATGTTGTAAAATCCTACTGTTCTCTGTTGAAGATGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000167875.9
CDS CCA 72 bp TCTGAGCGGCCAGGAACGCCGCGGTCTCCACCAGACTaGACCTGTCCGGCAGGAACCAGCCCGCCGCTCTTC +
Preference number: 6 (lower is better)
Translates to: SERPGTPRSPPD*TCPAGTSPPLF
Trigger: GAAGAGCGGCGGGCTGGTTCCTGCCGGACAGGTCCAGTCTGGTGGAGACCGCGGCGTTCCTGGCCGCTCAGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127243.8
CDS CAA 72 bp GTGGAAATGGTTTCCCTCTTCCTAGCGTACTCTTCCTaGAGCTCCTGGATTTTAGCAGTCAGCTCTTCCGAC +
Preference number: 6 (lower is better)
Translates to: VEMVSLFLAYSS*SSWILAVSSSD
Trigger: GTCGGAAGAGCTGACTGCTAAAATCCAGGAGCTCAAGGAAGAGTACGCTAGGAAGAGGGAAACCATTTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000149045.8
ENSMUST00000149643.2
ENSMUST00000167875.9
CDS CAA 90 bp TTGAGCTCCTGGATTTTAGCAGTCAGCTCTTCCGACTCTTGCTCCTaGCCTTTTACTTCAGCAATCATCTTCAACACATTCTCTTTCTTT +
Preference number: 6 (lower is better)
Translates to: LSSWILAVSSSDSCS*PFTSAIIFNTFSFF
Trigger: AAAGAAAGAGAATGTGTTGAAGATGATTGCTGAAGTAAAAGGCAAGGAGCAAGAGTCGGAAGAGCTGACTGCTAAAATCCAGGAGCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005365.15
ENSMUST00000112320.8
ENSMUST00000127243.8
ENSMUST00000149045.8
ENSMUST00000149643.2
ENSMUST00000167875.9