Pregenerated sensors for SPC24 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074476Ensembl transcript IDs: ENSMUST00000098942.6, ENSMUST00000214149.2, ENSMUST00000216057.2, ENSMUST00000217382.2
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACCAGGCTCCAGAGGTAGTCACTGATGAACTTCGGCGAGAGCTGTaGACTGTCCAAGTGGATGGGCTGGGCCACTGTGGGGCCGTGGTG | + |
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Preference number: 1 (lower is better) Translates to: HQAPEVVTDELRREL*TVQVDGLGHCGAVV Trigger: CACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGAAGTTCATCAGTGACTACCTCTGGAGCCTGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR TCA 90 bp | CTGCCTCTGCCTTCACAGTGCGAGGGCGGGTTGTGCCACCACGCCTaGCTGTGTCTAGTATGTGAAGATGCACCCATTTCCCCCAGGTGC | + |
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Preference number: 1 (lower is better) Translates to: LPLPSQCEGGLCHHA*LCLVCEDAPISPRC Trigger: GCACCTGGGGGAAATGGGTGCATCTTCACATACTAGACACAGTCAGGCGTGGTGGCACAACCCGCCCTCGCACTGTGAAGGCAGAGGCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR CCA 90 bp | CTGATGAACTTCGGCGAGAGCTGTGCACTGTCCAAGTGGATGGGCTaGGCCACTGTGGGGCCGTGGTGGACTGAGGACGAGATGAAAGGA | + |
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Preference number: 1 (lower is better) Translates to: LMNFGESCALSKWMG*ATVGPWWTEDEMKG Trigger: TCCTTTCATCTCGTCCTCAGTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGAAGTTCATCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR CCA 90 bp | TGTGCACTGTCCAAGTGGATGGGCTGGGCCACTGTGGGGCCGTGGTaGACTGAGGACGAGATGAAAGGAAAGTGTTTTCGGTCCTCCCAG | + |
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Preference number: 1 (lower is better) Translates to: CALSKWMGWATVGPW*TEDEMKGKCFRSSQ Trigger: CTGGGAGGACCGAAAACACTTTCCTTTCATCTCGTCCTCAGTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR CCA 90 bp | GGCTCCCTCAACCCCAGTTCTGTGCAAGGTATGAGGTCAAGGCTCTaGCTCCCACGTGGTGTCCACCAGGCTCCAGAGGTAGTCACTGAT | + |
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Preference number: 1 (lower is better) Translates to: GSLNPSSVQGMRSRL*LPRGVHQAPEVVTD Trigger: ATCAGTGACTACCTCTGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGCACAGAACTGGGGTTGAGGGAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR CCA 90 bp | ATTTATCTGGGTGTGTGTGAGTGCAAACATGCCACAGTGTCCCTGTaGACTCAGATGACAACGTATATAGCTGTTCTCCCACCAGTGGGT | + |
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Preference number: 1 (lower is better) Translates to: IYLGVCECKHATVSL*TQMTTYIAVLPPVG Trigger: ACCCACTGGTGGGAGAACAGCTATATACGTTGTCATCTGAGTCCACAGGGACACTGTGGCATGTTTGCACTCACACACACCCAGATAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR GCA 90 bp | ACAGTTAAATTGTCTTCCCTTTACCCATCATCTATAGACACTGTCTaGATCTGGATGTGGAGGGTGACACCCCATGAACATGATGCATCG | + |
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Preference number: 1 (lower is better) Translates to: TVKLSSLYPSSIDTV*IWMWRVTPHEHDAS Trigger: CGATGCATCATGTTCATGGGGTGTCACCCTCCACATCCAGATGCAGACAGTGTCTATAGATGATGGGTAAAGGGAAGACAATTTAACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGCTCCAGAGGTAGTCACTGATGAACTTCGGCGAGAGCTGTGCACTGTCCAAAGCCTCAAACTCCAGTaGGATCCACTGCCTCTGCCT | + |
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Preference number: 2 (lower is better) Translates to: QAPEVVTDELRRELCTVQSLKLQ*DPLPLP Trigger: AGGCAGAGGCAGTGGATCTCACTGGAGTTTGAGGCT...TTGGACAGTGCACAGCTCTCGCCGAAGTTCATCAGTGACTACCTCTGGAGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR-3UTR GCA 90 bp | AGGGTGACACCCCATGAACATGATGCATCGCTATCTCTGCAAGAGTCCACTTTGCCCATTTCCCCCAGGTaGCTCCTCCCACCCCAACAT | + |
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Preference number: 2 (lower is better) Translates to: RVTPHEHDASLSLQESTLPISPR*LLPPQH Trigger: ATGTTGGGGTGGGAGGAGGCACCTGGGGGAAATGGG...CAAAGTGGACTCTTGCAGAGATAGCGATGCATCATGTTCATGGGGTGTCACCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR-3UTR GCA 90 bp | TTGCAGCTGGTCTGGAGAACATGTAGGCTCCAGGTTACCCGCAGGCTGAGAAAATCCAGTGAGATCCACTaGCTCTGCCTTCACAGTGCG | + |
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Preference number: 2 (lower is better) Translates to: LQLVWRTCRLQVTRRLRKSSEIH*LCLHSA Trigger: CGCACTGTGAAGGCAGAGGCAGTGGATCTCACTGGA...TTTTCTCAGCCTGCGGGTAACCTGGAGCCTACATGTTCTCCAGACCAGCTGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR-3UTR TCA 90 bp | AGGGTGACACCCCATGAACATGATGCATCGCTATCTCTGCAAGAGTCCACTTTGGTTCTGTGCAAGGTATaGGGTCAAGGCTCTGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: RVTPHEHDASLSLQESTLVLCKV*GQGSGS Trigger: GGAGCCAGAGCCTTGACCTCATACCTTGCACAGAAC...CAAAGTGGACTCTTGCAGAGATAGCGATGCATCATGTTCATGGGGTGTCACCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR-3UTR CCA 90 bp | AGTGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAACTGCACACATTTTTGAGCTGCAGGCCAGCCTaGACTCCATGCTGTCTCAAA | + |
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Preference number: 2 (lower is better) Translates to: SVLLTTEPSLQPQLHTFLSCRPA*TPCCLK Trigger: TTTGAGACAGCATGGAGTCCAGGCTGGCCTGCAGCT...CAAAAATGTGTGCAGTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| 3UTR-3UTR TCA 90 bp | TTGCAGCTGGTCTGGAGAACATGTAGGCTCCAGGTTACCCGCAGGCTGAGAAAACATTTAATTTTAGAGTaGTCCCCTCCTTGGCTCCCT | + |
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Preference number: 2 (lower is better) Translates to: LQLVWRTCRLQVTRRLRKHLILE*SPPWLP Trigger: AGGGAGCCAAGGAGGGGATCACTCTAAAATTAAATG...TTTTCTCAGCCTGCGGGTAACCTGGAGCCTACATGTTCTCCAGACCAGCTGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR-3UTR TCA 90 bp | CACTTGAGAGACAGAAACGGGAGGTTCACCAAGGATTTGCAGCTGGTCTGGAGAACTGTGTCTAGTATGTaGAGATGCACCCATTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: HLRDRNGRFTKDLQLVWRTVSSM*RCTHFP Trigger: GGGGAAATGGGTGCATCTTCACATACTAGACACAGT...TCTCCAGACCAGCTGCAAATCCTTGGTGAACCTCCCGTTTCTGTCTCTCAAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR-3UTR GCA 90 bp | ATCAGTGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAACTGCACACATTTCCAGCCTGGACTCCATaGTGTCTCAAAGCAAGTAGA | + |
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Preference number: 2 (lower is better) Translates to: ISVLLTTEPSLQPQLHTFPAWTP*CLKASR Trigger: TCTACTTGCTTTGAGACAGCATGGAGTCCAGGCTGG...AAATGTGTGCAGTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACACTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| 3UTR-3UTR GCA 90 bp | ATAGACACTGTCTGCATCTGGATGTGGAGGGTGACACCCCATGAACATGATGCACCAGCCTGGACTCCATaGTGTCTCAAAGCAAGTAGA | + |
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Preference number: 2 (lower is better) Translates to: IDTVCIWMWRVTPHEHDAPAWTP*CLKASR Trigger: TCTACTTGCTTTGAGACAGCATGGAGTCCAGGCTGG...TGCATCATGTTCATGGGGTGTCACCCTCCACATCCAGATGCAGACAGTGTCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR-3UTR TCA 90 bp | CATAACTCCAGTTTCAGGGGGTCTGAAGCCCTCTCTAACCTCTCCTGGAATACACATTTAATTTTAGAGTaGTCCCCTCCTTGGCTCCCT | + |
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Preference number: 2 (lower is better) Translates to: HNSSFRGSEALSNLSWNTHLILE*SPPWLP Trigger: AGGGAGCCAAGGAGGGGATCACTCTAAAATTAAATG...TGTATTCCAGGAGAGGTTAGAGAGGGCTTCAGACCCCCTGAAACTGGAGTTATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| 3UTR-3UTR CCA 90 bp | GCTGTCTCAAAGCAAGTAGATAAATCAATGAACGCACTCACATACAGACATTTAGCTCTGGCTCCCACGTaGTGTCCACCAGGCTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: AVSKQVDKSMNALTYRHLALAPT*CPPGSR Trigger: TCTGGAGCCTGGTGGACACCACGTGGGAGCCAGAGC...TAAATGTCTGTATGTGAGTGCGTTCATTGATTTATCTACTTGCTTTGAGACAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR-3UTR GCA 90 bp | ATCAGTGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAACTGCACACATTTATTAAGAGCACTGGCTaGTCTTCTATAGAATACAGG | + |
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Preference number: 2 (lower is better) Translates to: ISVLLTTEPSLQPQLHTFIKSTG*SSIEYR Trigger: CCTGTATTCTATAGAAGAGCAGCCAGTGCTCTTAAT...AAATGTGTGCAGTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACACTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| 3UTR-3UTR GCA 90 bp | AGTGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAACTGCACACATTTTTGGCTAACAGACACACATaGAGACAAAACATTCATACA | + |
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Preference number: 2 (lower is better) Translates to: SVLLTTEPSLQPQLHTFLANRHT*RQNIHT Trigger: TGTATGAATGTTTTGTCTGCATGTGTGTCTGTTAGC...CAAAAATGTGTGCAGTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| 3UTR CCA 72 bp | TTCGGCGAGAGCTGTGCACTGTCCAAGTGGATGGGCTaGGCCACTGTGGGGCCGTGGTGGACTGAGGACGAG | + |
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Preference number: 3 (lower is better) Translates to: FGESCALSKWMG*ATVGPWWTEDE Trigger: CTCGTCCTCAGTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR GCA 72 bp | AGGCTAGCCTCAAACTCCAGTGAGATCCACTGCCTCTaGCTTCACAGTGCGAGGGCGGGTTGTGCCACCACG | + |
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Preference number: 3 (lower is better) Translates to: RLASNSSEIHCL*LHSARAGCATT Trigger: CGTGGTGGCACAACCCGCCCTCGCACTGTGAAGGCAGAGGCAGTGGATCTCACTGGAGTTTGAGGCTAGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR TCA 72 bp | TCCTTGGCTCCCTCAACCCCAGTTCTGTGCAAGGTATaGGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACC | + |
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Preference number: 3 (lower is better) Translates to: SLAPSTPVLCKV*GQGSGSHVVST Trigger: GGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGCACAGAACTGGGGTTGAGGGAGCCAAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| 3UTR TCA 72 bp | CGGGTTGTGCCACCACGCCTGACTGTGTCTAGTATGTaGAGATGCACCCATTTCCCCCAGGTGCCTCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: RVVPPRLTVSSM*RCTHFPQVPPP Trigger: GGGAGGAGGCACCTGGGGGAAATGGGTGCATCTTCACATACTAGACACAGTCAGGCGTGGTGGCACAACCCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR TCA 72 bp | GGGCCACTGTGGGGCCGTGGTGGACTGAGGACGAGATaGAAGGAAAGTGTTTTCGGTCCTCCCAGGTCCAGT | + |
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Preference number: 3 (lower is better) Translates to: GPLWGRGGLRTR*KESVFGPPRSS Trigger: ACTGGACCTGGGAGGACCGAAAACACTTTCCTTTCATCTCGTCCTCAGTCCACCACGGCCCCACAGTGGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR GCA 72 bp | CCAGAGGTAGTCACTGATGAACTTCGGCGAGAGCTGTaGACTGTCCAAGTGGATGGGCTGGGCCACTGTGGG | + |
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Preference number: 3 (lower is better) Translates to: PEVVTDELRREL*TVQVDGLGHCG Trigger: CCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGAAGTTCATCAGTGACTACCTCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR CCA 72 bp | AACCCCAGTTCTGTGCAAGGTATGAGGTCAAGGCTCTaGCTCCCACGTGGTGTCCACCAGGCTCCAGAGGTA | + |
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Preference number: 3 (lower is better) Translates to: NPSSVQGMRSRL*LPRGVHQAPEV Trigger: TACCTCTGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGCACAGAACTGGGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| 3UTR CCA 72 bp | TCCAAGTGGATGGGCTGGGCCACTGTGGGGCCGTGGTaGACTGAGGACGAGATGAAAGGAAAGTGTTTTCGG | + |
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Preference number: 3 (lower is better) Translates to: SKWMGWATVGPW*TEDEMKGKCFR Trigger: CCGAAAACACTTTCCTTTCATCTCGTCCTCAGTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR GCA 72 bp | GTCCAGTCGCTAACCTTGAACTGTGGTGACTCCTCCTaGCTCAGCTTCCCAAGTGCTGGGATGATATCAGGC | + |
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Preference number: 3 (lower is better) Translates to: VQSLTLNCGDSS*LSFPSAGMISG Trigger: GCCTGATATCATCCCAGCACTTGGGAAGCTGAGGCAGGAGGAGTCACCACAGTTCAAGGTTAGCGACTGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR CCA 72 bp | AGAAACGGGAGGTTCACCAAGGATTTGCAGCTGGTCTaGAGAACATGTAGGCTCCAGGTTACCCGCAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: RNGRFTKDLQLV*RTCRLQVTRRL Trigger: CAGCCTGCGGGTAACCTGGAGCCTACATGTTCTCCAGACCAGCTGCAAATCCTTGGTGAACCTCCCGTTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR TCA 72 bp | CTGGATGTGATGGCAAACACCCACAGTCCCAGCACTTaGGAGACAGAAACGGGAGGTTCACCAAGGATTTGC | + |
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Preference number: 3 (lower is better) Translates to: LDVMANTHSPST*ETETGGSPRIC Trigger: GCAAATCCTTGGTGAACCTCCCGTTTCTGTCTCTCAAGTGCTGGGACTGTGGGTGTTTGCCATCACATCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR CCA 72 bp | GACACACCAGAAGAGGGCATCGGATCCCATTACAGATaGGAATTGAACCCAGAACCTCTGGAAGAGCAATCA | + |
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Preference number: 3 (lower is better) Translates to: DTPEEGIGSHYR*ELNPEPLEEQS Trigger: TGATTGCTCTTCCAGAGGTTCTGGGTTCAATTCCCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| 3UTR TCA 72 bp | AACCTCTGGAAGAGCAATCAGTGTGCTCTTAACCACTaGGCCATCTCTCCAGCCCCAACTGCACACATTTTT | + |
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Preference number: 3 (lower is better) Translates to: NLWKSNQCALNH*AISPAPTAHIF Trigger: AAAAATGTGTGCAGTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACACTGATTGCTCTTCCAGAGGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| 3UTR CCA 72 bp | AGTTTCAGGGGGTCTGAAGCCCTCTCTAACCTCTCCTaGAATACACAGCTAACAGACACACATGCAGACAAA | + |
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Preference number: 3 (lower is better) Translates to: SFRGSEALSNLS*NTQLTDTHADK Trigger: TTTGTCTGCATGTGTGTCTGTTAGCTGTGTATTCCAGGAGAGGTTAGAGAGGGCTTCAGACCCCCTGAAACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| 3UTR CCA 72 bp | TACCCATCATCTATAGACACTGTCTGCATCTGGATGTaGAGGGTGACACCCCATGAACATGATGCATCGCTA | + |
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Preference number: 3 (lower is better) Translates to: YPSSIDTVCIWM*RVTPHEHDASL Trigger: TAGCGATGCATCATGTTCATGGGGTGTCACCCTCCACATCCAGATGCAGACAGTGTCTATAGATGATGGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR CCA 72 bp | TCCCTTTACCCATCATCTATAGACACTGTCTGCATCTaGATGTGGAGGGTGACACCCCATGAACATGATGCA | + |
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Preference number: 3 (lower is better) Translates to: SLYPSSIDTVCI*MWRVTPHEHDA Trigger: TGCATCATGTTCATGGGGTGTCACCCTCCACATCCAGATGCAGACAGTGTCTATAGATGATGGGTAAAGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR GCA 72 bp | TTGTCTTCCCTTTACCCATCATCTATAGACACTGTCTaGATCTGGATGTGGAGGGTGACACCCCATGAACAT | + |
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Preference number: 3 (lower is better) Translates to: LSSLYPSSIDTV*IWMWRVTPHEH Trigger: ATGTTCATGGGGTGTCACCCTCCACATCCAGATGCAGACAGTGTCTATAGATGATGGGTAAAGGGAAGACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| 3UTR CCA 72 bp | TTCTATAGAATACAGGTTCGATTCCCAGTAGCCACATaGCAGCTCAGAACCACCCATAACTCCAGTTTCAGG | + |
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Preference number: 3 (lower is better) Translates to: FYRIQVRFPVAT*QLRTTHNSSFR Trigger: CCTGAAACTGGAGTTATGGGTGGTTCTGAGCTGCCATGTGGCTACTGGGAATCGAACCTGTATTCTATAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| 3UTR-3UTR CAA 90 bp | GCTGTCTCAAAGCAAGTAGATAAATCAATGAACGCACTCACATACAGACATTTAAGAGTGATCCCCTCCTaGGCTCCCTCAACCCCAGTT | + |
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Preference number: 3 (lower is better) Translates to: AVSKQVDKSMNALTYRHLRVIPS*APSTPV Trigger: AACTGGGGTTGAGGGAGCCAAGGAGGGGATCACTCT...TAAATGTCTGTATGTGAGTGCGTTCATTGATTTATCTACTTGCTTTGAGACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098942.6 ENSMUST00000217382.2 |
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| 3UTR CCA 72 bp | ATCGACTTCTCAAAGGATACTGCCCTTGATCATCCCTaGCTCGCATTCATAATCCCACTGTATTTTACTAAT | + |
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Preference number: 3 (lower is better) Translates to: IDFSKDTALDHP*LAFIIPLYFTN Trigger: ATTAGTAAAATACAGTGGGATTATGAATGCGAGCCAGGGATGATCAAGGGCAGTATCCTTTGAGAAGTCGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| CDS-3UTR CCA 90 bp | AGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCAGAGGTGCGCCTCGGCGCGGTTaGCCCCCAGCAGGCTCAGTA | + |
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Preference number: 4 (lower is better) Translates to: RYEVKALAPTWCPPGSRGAPRRG*PPAGSV Trigger: TACTGAGCCTGCTGGGGGCCAACCGCGCCGAGGCGC...ACCTCTGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS-3UTR CCA 90 bp | GCAAGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCAGAGCGCCTCGGCGCGGTTaGCCCCCAGCAGGCTCAGTA | + |
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Preference number: 4 (lower is better) Translates to: ARYEVKALAPTWCPPGSRAPRRG*PPAGSV Trigger: TACTGAGCCTGCTGGGGGCCAACCGCGCCGAGGCGC...TCTGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS-3UTR GCA 90 bp | GCAAGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCAGAAGCTCCACCTCCAGCTaGTGCAGCTCGGTGTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: ARYEVKALAPTWCPPGSRSSTSS*CSSVSP Trigger: GGGGGACACCGAGCTGCAGCAGCTGGAGGTGGAGCT...TCTGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS-3UTR CCA 90 bp | TGTGCAAGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCTCCAAGTGGATGGGCTaGGCCACTGTGGGGCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: CARYEVKALAPTWCPPGSSKWMG*ATVGPW Trigger: CCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGA...GGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGCACA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS-3UTR CCA 90 bp | TGTGCAAGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCTGGGCTGGGCCACTGTaGGGCCGTGGTGGAACTGCA | + |
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Preference number: 4 (lower is better) Translates to: CARYEVKALAPTWCPPGSWAGPL*GRGGTA Trigger: TGCAGTTCCACCACGGCCCCACAGTGGCCCAGCCCA...GGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGCACA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS-3UTR CCA 90 bp | GTGCAAGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCACACTGTCCAAGTGGATaGGCTGGGCCACTGTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: VQGMRSRLWLPRGVHQAPHCPSG*AGPLWG Trigger: GCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTG...TGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS-3UTR CCA 90 bp | CAGGTTCGATTCCCAGTAGCCACATGGCAGCTCAGAACCACCCATAACTCCAGTGCGCCTCGGCGCGGTTaGCCCCCAGCAGGCTCAGTA | + |
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Preference number: 4 (lower is better) Translates to: QVRFPVATWQLRTTHNSSAPRRG*PPAGSV Trigger: TACTGAGCCTGCTGGGGGCCAACCGCGCCGAGGCGC...ACTGGAGTTATGGGTGGTTCTGAGCTGCCATGTGGCTACTGGGAATCGAACCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| CDS-3UTR GCA 90 bp | CCTCCTTGGCTCCCTCAACCCCAGTTCTGTGCAAGGTATGAGGTCAAGGCTCTGGGGCCGTGGTGGAACTaGAGAGGGGATGGTGACGGT | + |
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Preference number: 4 (lower is better) Translates to: PPWLPQPQFCARYEVKALGPWWN*RGDGDG Trigger: ACCGTCACCATCCCCTCTGCAGTTCCACCACGGCCC...CAGAGCCTTGACCTCATACCTTGCACAGAACTGGGGTTGAGGGAGCCAAGGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS-3UTR CCA 90 bp | GCAAGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCAGATCTACATCCCTCTCCTaGCGCTGGAGCTCTTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: ARYEVKALAPTWCPPGSRSTSLS*RWSSSS Trigger: GGAGGAAGAGCTCCAGCGCCAGGAGAGGGATGTAGA...TCTGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS-3UTR CCA 90 bp | GTGCAAGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCATGTGCACTGTCCAAGTaGATGGGCTGGGCCACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: VQGMRSRLWLPRGVHQAPCALSK*MGWATV Trigger: CACAGTGGCCCAGCCCATCCACTTGGACAGTGCACA...TGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS-3UTR TCA 90 bp | GCAAGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCAGACTGCAGAGGGGATGGTaGCGGTGTTGTCCTCATCTA | + |
|
Preference number: 4 (lower is better) Translates to: ARYEVKALAPTWCPPGSRLQRGW*RCCPHL Trigger: TAGATGAGGACAACACCGTCACCATCCCCTCTGCAG...TCTGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS-3UTR TCA 90 bp | GTGCAAGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCACTGCAGAGGGGATGGTaGCGGTGTTGTCCTCATCTA | + |
|
Preference number: 4 (lower is better) Translates to: VQGMRSRLWLPRGVHQAPLQRGW*RCCPHL Trigger: TAGATGAGGACAACACCGTCACCATCCCCTCTGCAG...TGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS-3UTR GCA 90 bp | AGGGAGAGAAGACAGTTACCACAGCATCCATGTCAACCACGCCACAGGGCAAGAAGCTCCACCTCCAGCTaGTGCAGCTCGGTGTCCCCC | + |
|
Preference number: 4 (lower is better) Translates to: RERRQLPQHPCQPRHRARSSTSS*CSSVSP Trigger: GGGGGACACCGAGCTGCAGCAGCTGGAGGTGGAGCT...TCTTGCCCTGTGGCGTGGTTGACATGGATGCTGTGGTAACTGTCTTCTCTCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
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| CDS-3UTR CCA 90 bp | CCTCCTTGGCTCCCTCAACCCCAGTTCTGTGCAAGGTATGAGGTCAAGGCTCTGACTGTGGGGCCGTGGTaGAACTGCAGAGGGGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: PPWLPQPQFCARYEVKALTVGPW*NCRGDG Trigger: ACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGT...CAGAGCCTTGACCTCATACCTTGCACAGAACTGGGGTTGAGGGAGCCAAGGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
||
| CDS-3UTR GCA 90 bp | CCTCCTTGGCTCCCTCAACCCCAGTTCTGTGCAAGGTATGAGGTCAAGGCTCTGCACAGGTGTCCTCCTTaGTGGTCCTCTGGAGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: PPWLPQPQFCARYEVKALHRCPP*WSSGAP Trigger: TGGAGCTCCAGAGGACCAGCAAGGAGGACACCTGTG...CAGAGCCTTGACCTCATACCTTGCACAGAACTGGGGTTGAGGGAGCCAAGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS-3UTR CCA 90 bp | ATCAGTGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAACTGCACACATTTTGGGCTGGGCCACTGTaGGGCCGTGGTGGATGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: ISVLLTTEPSLQPQLHTFWAGPL*GRGGCP Trigger: AGGGCATCCACCACGGCCCCACAGTGGCCCAGCCCA...AAATGTGTGCAGTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACACTGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
||
| CDS-3UTR GCA 90 bp | ATCAGTGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAACTGCACACATTTAGCTCCACCTCCAGCTaGTGCAGCTCGGTGTCCCCC | + |
|
Preference number: 4 (lower is better) Translates to: ISVLLTTEPSLQPQLHTFSSTSS*CSSVSP Trigger: GGGGGACACCGAGCTGCAGCAGCTGGAGGTGGAGCT...AAATGTGTGCAGTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACACTGAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
||
| CDS-3UTR CCA 90 bp | TATAGAATACAGGTTCGATTCCCAGTAGCCACATGGCAGCTCAGAACCACCCATTCCAAGTGGATGGGCTaGGCCACTGTGGGGCCGTGG | + |
|
Preference number: 4 (lower is better) Translates to: YRIQVRFPVATWQLRTTHSKWMG*ATVGPW Trigger: CCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGA...ATGGGTGGTTCTGAGCTGCCATGTGGCTACTGGGAATCGAACCTGTATTCTATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
||
| 3UTR CAA 72 bp | AAGTGTTTTCGGTCCTCCCAGGTCCAGTCGCTAACCTaGAACTGTGGTGACTCCTCCTGCCTCAGCTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: KCFRSSQVQSLT*NCGDSSCLSFP Trigger: TGGGAAGCTGAGGCAGGAGGAGTCACCACAGTTCAAGGTTAGCGACTGGACCTGGGAGGACCGAAAACACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217382.2 |
||
| CDS-3UTR TCA 90 bp | TTCAGGGGGTCTGAAGCCCTCTCTAACCTCTCCTGGAATACACAGCTAACAGACCGTGGTGGATGCCCTTaGTCATCCCTGGCTCGCATT | + |
|
Preference number: 4 (lower is better) Translates to: FRGSEALSNLSWNTQLTDRGGCP*SSLARI Trigger: AATGCGAGCCAGGGATGATCAAGGGCATCCACCACG...GTCTGTTAGCTGTGTATTCCAGGAGAGGTTAGAGAGGGCTTCAGACCCCCTGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
||
| CDS-3UTR TCA 90 bp | AGTGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAACTGCACACATTTTTGCTGCAGAGGGGATGGTaGCGGTGTTGTCCTCATCTA | + |
|
Preference number: 4 (lower is better) Translates to: SVLLTTEPSLQPQLHTFLLQRGW*RCCPHL Trigger: TAGATGAGGACAACACCGTCACCATCCCCTCTGCAG...CAAAAATGTGTGCAGTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
||
| CDS-3UTR GCA 90 bp | TATAGAATACAGGTTCGATTCCCAGTAGCCACATGGCAGCTCAGAACCACCCATCACAGGTGTCCTCCTTaGTGGTCCTCTGGAGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: YRIQVRFPVATWQLRTTHHRCPP*WSSGAP Trigger: TGGAGCTCCAGAGGACCAGCAAGGAGGACACCTGTG...ATGGGTGGTTCTGAGCTGCCATGTGGCTACTGGGAATCGAACCTGTATTCTATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| 3UTR CAA 72 bp | CCAGAAGAGGGCATCGGATCCCATTACAGATGGGAATaGAACCCAGAACCTCTGGAAGAGCAATCAGTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: PEEGIGSHYRWE*NPEPLEEQSVC Trigger: GCACACTGATTGCTCTTCCAGAGGTTCTGGGTTCAATTCCCATCTGTAATGGGATCCGATGCCCTCTTCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
||
| CDS-3UTR CCA 90 bp | AGTGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAACTGCACACATTTTTGGCCCTTGATCATCCCTaGCTCGCATTCATAATCCCA | + |
|
Preference number: 4 (lower is better) Translates to: SVLLTTEPSLQPQLHTFLALDHP*LAFIIP Trigger: TGGGATTATGAATGCGAGCCAGGGATGATCAAGGGC...CAAAAATGTGTGCAGTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
||
| CDS-3UTR CCA 90 bp | CTCCATGCTGTCTCAAAGCAAGTAGATAAATCAATGAACGCACTCACATACAGATCTACATCCCTCTCCTaGCGCTGGAGCTCTTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LHAVSKQVDKSMNALTYRSTSLS*RWSSSS Trigger: GGAGGAAGAGCTCCAGCGCCAGGAGAGGGATGTAGA...TCTGTATGTGAGTGCGTTCATTGATTTATCTACTTGCTTTGAGACAGCATGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098942.6 ENSMUST00000217382.2 |
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| CDS-3UTR CCA 90 bp | GCTGTCTCAAAGCAAGTAGATAAATCAATGAACGCACTCACATACAGACATTTACACTGTCCAAGTGGATaGGCTGGGCCACTGTGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: AVSKQVDKSMNALTYRHLHCPSG*AGPLWG Trigger: GCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTG...TAAATGTCTGTATGTGAGTGCGTTCATTGATTTATCTACTTGCTTTGAGACAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
||
| CDS-3UTR CCA 90 bp | CTCCATGCTGTCTCAAAGCAAGTAGATAAATCAATGAACGCACTCACATACAGATGTGCACTGTCCAAGTaGATGGGCTGGGCCACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: LHAVSKQVDKSMNALTYRCALSK*MGWATV Trigger: CACAGTGGCCCAGCCCATCCACTTGGACAGTGCACA...TCTGTATGTGAGTGCGTTCATTGATTTATCTACTTGCTTTGAGACAGCATGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| CDS CCA 90 bp | GCTCGTAGCTCCCGAGCAGCCGCCGCTGCTGCGCCTCGGCGCGGTTaGCCCCCAGCAGGCTCAGTAGCCAGTTGCTCACCTCCACCATGT | + |
|
Preference number: 5 (lower is better) Translates to: ARSSRAAAAAAPRRG*PPAGSVASCSPPPC Trigger: ACATGGTGGAGGTGAGCAACTGGCTACTGAGCCTGCTGGGGGCCAACCGCGCCGAGGCGCAGCAGCGGCGGCTGCTCGGGAGCTACGAGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098942.6 ENSMUST00000216057.2 ENSMUST00000217382.2 |
||
| CDS-3UTR CAA 90 bp | GCAAGGTATGAGGTCAAGGCTCTGGCTCCCACGTGGTGTCCACCAGGCTCCAGATGCGCCTCGGCGCGGTaGGCCCCCAGCAGGCTCAGT | + |
|
Preference number: 5 (lower is better) Translates to: ARYEVKALAPTWCPPGSRCASAR*APSRLS Trigger: ACTGAGCCTGCTGGGGGCCAACCGCGCCGAGGCGCA...TCTGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGACCTCATACCTTGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS TCA 90 bp | GGGCTGGGCCACTGTGGGGCCGTGGTGGAACTGCAGAGGGGATGGTaGCGGTGTTGTCCTCATCTACATCCCTCTCCTGGCGCTGGAGCT | + |
|
Preference number: 5 (lower is better) Translates to: GLGHCGAVVELQRGW*RCCPHLHPSPGAGA Trigger: AGCTCCAGCGCCAGGAGAGGGATGTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGTGGCCCAGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS CCA 90 bp | TCGGCGAGAGCTGTGCACTGTCCAAGTGGATGGGCTGGGCCACTGTaGGGCCGTGGTGGAACTGCAGAGGGGATGGTGACGGTGTTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: SARAVHCPSGWAGPL*GRGGTAEGMVTVLS Trigger: GGACAACACCGTCACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS-3UTR CAA 90 bp | CTCCTTGGCTCCCTCAACCCCAGTTCTGTGCAAGGTATGAGGTCAAGGCTCTGGTGCGCCTCGGCGCGGTaGGCCCCCAGCAGGCTCAGT | + |
|
Preference number: 5 (lower is better) Translates to: LLGSLNPSSVQGMRSRLWCASAR*APSRLS Trigger: ACTGAGCCTGCTGGGGGCCAACCGCGCCGAGGCGCA...CCAGAGCCTTGACCTCATACCTTGCACAGAACTGGGGTTGAGGGAGCCAAGGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS CCA 90 bp | CTGATGAACTTCGGCGAGAGCTGTGCACTGTCCAAGTGGATGGGCTaGGCCACTGTGGGGCCGTGGTGGATGCCCTTGATCATCCCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: LMNFGESCALSKWMG*ATVGPWWMPLIIPG Trigger: GCCAGGGATGATCAAGGGCATCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGAAGTTCATCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| CDS CCA 90 bp | CTGATGAACTTCGGCGAGAGCTGTGCACTGTCCAAGTGGATGGGCTaGGCCACTGTGGGGCCGTGGTGGAACTGCAGAGGGGATGGTGAC | + |
|
Preference number: 5 (lower is better) Translates to: LMNFGESCALSKWMG*ATVGPWWNCRGDGD Trigger: GTCACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGAAGTTCATCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS GCA 90 bp | CTGTCCAAGTGGATGGGCTGGGCCACTGTGGGGCCGTGGTGGAACTaGAGAGGGGATGGTGACGGTGTTGTCCTCATCTACATCCCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: LSKWMGWATVGPWWN*RGDGDGVVLIYIPL Trigger: GAGAGGGATGTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS GCA 90 bp | CAGGTGTCCTCCTTGCTGGTCCTCTGGAGCTCCACCTCCAGCTGCTaGAGCTCGGTGTCCCCCTGGCGCGTACATTCTTTCAGTTCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: QVSSLLVLWSSTSSC*SSVSPWRVHSFSSR Trigger: TCTTGAACTGAAAGAATGTACGCGCCAGGGGGACACCGAGCTGCAGCAGCTGGAGGTGGAGCTCCAGAGGACCAGCAAGGAGGACACCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098942.6 ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS GCA 90 bp | ACACAGGTGTCCTCCTTGCTGGTCCTCTGGAGCTCCACCTCCAGCTaGTGCAGCTCGGTGTCCCCCTGGCGCGTACATTCTTTCAGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: TQVSSLLVLWSSTSS*CSSVSPWRVHSFSS Trigger: TGAACTGAAAGAATGTACGCGCCAGGGGGACACCGAGCTGCAGCAGCTGGAGGTGGAGCTCCAGAGGACCAGCAAGGAGGACACCTGTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098942.6 ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS CCA 90 bp | GCAGAGGGGATGGTGACGGTGTTGTCCTCATCTACATCCCTCTCCTaGCGCTGGAGCTCTTCCTCCATCTCCCTGAGCTCCTGCAGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: AEGMVTVLSSSTSLS*RWSSSSISLSSCSS Trigger: AGAGCTGCAGGAGCTCAGGGAGATGGAGGAAGAGCTCCAGCGCCAGGAGAGGGATGTAGATGAGGACAACACCGTCACCATCCCCTCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098942.6 ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS CCA 90 bp | TGTGCACTGTCCAAGTGGATGGGCTGGGCCACTGTGGGGCCGTGGTaGAACTGCAGAGGGGATGGTGACGGTGTTGTCCTCATCTACATC | + |
|
Preference number: 5 (lower is better) Translates to: CALSKWMGWATVGPW*NCRGDGDGVVLIYI Trigger: GATGTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS-3UTR CAA 90 bp | CATAACTCCAGTTTCAGGGGGTCTGAAGCCCTCTCTAACCTCTCCTGGAATACATGCGCCTCGGCGCGGTaGGCCCCCAGCAGGCTCAGT | + |
|
Preference number: 5 (lower is better) Translates to: HNSSFRGSEALSNLSWNTCASAR*APSRLS Trigger: ACTGAGCCTGCTGGGGGCCAACCGCGCCGAGGCGCA...TGTATTCCAGGAGAGGTTAGAGAGGGCTTCAGACCCCCTGAAACTGGAGTTATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| CDS CCA 90 bp | GGGATGGTGACGGTGTTGTCCTCATCTACATCCCTCTCCTGGCGCTaGAGCTCTTCCTCCATCTCCCTGAGCTCCTGCAGCTCTGTGATG | + |
|
Preference number: 5 (lower is better) Translates to: GMVTVLSSSTSLSWR*SSSSISLSSCSSVM Trigger: CATCACAGAGCTGCAGGAGCTCAGGGAGATGGAGGAAGAGCTCCAGCGCCAGGAGAGGGATGTAGATGAGGACAACACCGTCACCATCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098942.6 ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS-3UTR CAA 90 bp | CCTTGGCTCCCTCAACCCCAGTTCTGTGCAAGGTATGAGGTCAAGGCTCTGGCTACACAGGTGTCCTCCTaGCTGGTCCTCTGGAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: PWLPQPQFCARYEVKALATQVSS*LVLWSS Trigger: GGAGCTCCAGAGGACCAGCAAGGAGGACACCTGTGT...AGCCAGAGCCTTGACCTCATACCTTGCACAGAACTGGGGTTGAGGGAGCCAAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS-3UTR CAA 90 bp | CAGGTTCGATTCCCAGTAGCCACATGGCAGCTCAGAACCACCCATAACTCCAGTACACAGGTGTCCTCCTaGCTGGTCCTCTGGAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: QVRFPVATWQLRTTHNSSTQVSS*LVLWSS Trigger: GGAGCTCCAGAGGACCAGCAAGGAGGACACCTGTGT...ACTGGAGTTATGGGTGGTTCTGAGCTGCCATGTGGCTACTGGGAATCGAACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| CDS-3UTR CAA 90 bp | CTCCATGCTGTCTCAAAGCAAGTAGATAAATCAATGAACGCACTCACATACAGACCGTGGTGGATGCCCTaGATCATCCCTGGCTCGCAT | + |
|
Preference number: 5 (lower is better) Translates to: LHAVSKQVDKSMNALTYRPWWMP*IIPGSH Trigger: ATGCGAGCCAGGGATGATCAAGGGCATCCACCACGG...TCTGTATGTGAGTGCGTTCATTGATTTATCTACTTGCTTTGAGACAGCATGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| CDS CAA 72 bp | CTCCCGAGCAGCCGCCGCTGCTGCGCCTCGGCGCGGTaGGCCCCCAGCAGGCTCAGTAGCCAGTTGCTCACC | + |
|
Preference number: 6 (lower is better) Translates to: LPSSRRCCASAR*APSRLSSQLLT Trigger: GGTGAGCAACTGGCTACTGAGCCTGCTGGGGGCCAACCGCGCCGAGGCGCAGCAGCGGCGGCTGCTCGGGAG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098942.6 ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS CCA 72 bp | TCCCGAGCAGCCGCCGCTGCTGCGCCTCGGCGCGGTTaGCCCCCAGCAGGCTCAGTAGCCAGTTGCTCACCT | + |
|
Preference number: 6 (lower is better) Translates to: SRAAAAAAPRRG*PPAGSVASCSP Trigger: AGGTGAGCAACTGGCTACTGAGCCTGCTGGGGGCCAACCGCGCCGAGGCGCAGCAGCGGCGGCTGCTCGGGA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098942.6 ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS CCA 72 bp | GCTGTGCACTGTCCAAGTGGATGGGCTGGGCCACTGTaGGGCCGTGGTGGAACTGCAGAGGGGATGGTGACG | + |
|
Preference number: 6 (lower is better) Translates to: AVHCPSGWAGPL*GRGGTAEGMVT Trigger: CGTCACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
||
| CDS CCA 72 bp | TTCGGCGAGAGCTGTGCACTGTCCAAGTGGATGGGCTaGGCCACTGTGGGGCCGTGGTGGAACTGCAGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: FGESCALSKWMG*ATVGPWWNCRG Trigger: CCCTCTGCAGTTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
||
| CDS CCA 72 bp | TTCGGCGAGAGCTGTGCACTGTCCAAGTGGATGGGCTaGGCCACTGTGGGGCCGTGGTGGATGCCCTTGATC | + |
|
Preference number: 6 (lower is better) Translates to: FGESCALSKWMG*ATVGPWWMPLI Trigger: GATCAAGGGCATCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
||
| CDS CCA 72 bp | TCCAAGTGGATGGGCTGGGCCACTGTGGGGCCGTGGTaGAACTGCAGAGGGGATGGTGACGGTGTTGTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: SKWMGWATVGPW*NCRGDGDGVVL Trigger: GAGGACAACACCGTCACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
||
| CDS CAA 90 bp | CCACTGTGGGGCCGTGGTGGAACTGCAGAGGGGATGGTGACGGTGTaGTCCTCATCTACATCCCTCTCCTGGCGCTGGAGCTCTTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: PLWGRGGTAEGMVTV*SSSTSLSWRWSSSS Trigger: GGAGGAAGAGCTCCAGCGCCAGGAGAGGGATGTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
||
| CDS GCA 72 bp | TGGATGGGCTGGGCCACTGTGGGGCCGTGGTGGAACTaGAGAGGGGATGGTGACGGTGTTGTCCTCATCTAC | + |
|
Preference number: 6 (lower is better) Translates to: WMGWATVGPWWN*RGDGDGVVLIY Trigger: GTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGTGGCCCAGCCCATCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
||
| CDS CAA 72 bp | GGCCGTGGTGGAACTGCAGAGGGGATGGTGACGGTGTaGTCCTCATCTACATCCCTCTCCTGGCGCTGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: GRGGTAEGMVTV*SSSTSLSWRWS Trigger: GCTCCAGCGCCAGGAGAGGGATGTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTTCCACCACGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
||
| CDS TCA 72 bp | CACTGTGGGGCCGTGGTGGAACTGCAGAGGGGATGGTaGCGGTGTTGTCCTCATCTACATCCCTCTCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: HCGAVVELQRGW*RCCPHLHPSPG Trigger: GCCAGGAGAGGGATGTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTTCCACCACGGCCCCACAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216057.2 |
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| CDS TCA 72 bp | TCCATCTCCCTGAGCTCCTGCAGCTCTGTGATGAGCTaGCGTAGCCTAGCCTGCACACAGGTGTCCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: SISLSSCSSVMS*RSLACTQVSSL Trigger: CAAGGAGGACACCTGTGTGCAGGCTAGGCTACGTCAGCTCATCACAGAGCTGCAGGAGCTCAGGGAGATGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098942.6 ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS CCA 72 bp | ATGGTGACGGTGTTGTCCTCATCTACATCCCTCTCCTaGCGCTGGAGCTCTTCCTCCATCTCCCTGAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: MVTVLSSSTSLS*RWSSSSISLSS Trigger: GGAGCTCAGGGAGATGGAGGAAGAGCTCCAGCGCCAGGAGAGGGATGTAGATGAGGACAACACCGTCACCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098942.6 ENSMUST00000216057.2 ENSMUST00000217382.2 |
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| CDS TCA 72 bp | GATAGAGATGAGCCACATACACTGCAGAGGGGATGGTaGCGGTGTTGTCCTCATCTACATCCCTCTCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: DRDEPHTLQRGW*RCCPHLHPSPG Trigger: GCCAGGAGAGGGATGTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTGTATGTGGCTCATCTCTATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098942.6 ENSMUST00000214149.2 |
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| CDS CCA 72 bp | CACTGTGGGGCCGTGGTGGATGCCCTTGATCATCCCTaGCTCGCATTCATAATCCCACTGTATTTTACTAAT | + |
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Preference number: 6 (lower is better) Translates to: HCGAVVDALDHP*LAFIIPLYFTN Trigger: ATTAGTAAAATACAGTGGGATTATGAATGCGAGCCAGGGATGATCAAGGGCATCCACCACGGCCCCACAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| CDS CAA 90 bp | GATCATCCCTGGCTCGCATTCATAATCCCACTGTATTTTACTAATTaGGTGATAGAGATGAGCCACATACACTGCAGAGGGGATGGTGAC | + |
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Preference number: 6 (lower is better) Translates to: DHPWLAFIIPLYFTN*VIEMSHIHCRGDGD Trigger: GTCACCATCCCCTCTGCAGTGTATGTGGCTCATCTCTATCACCAAATTAGTAAAATACAGTGGGATTATGAATGCGAGCCAGGGATGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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| CDS GCA 72 bp | TTTACTAATTTGGTGATAGAGATGAGCCACATACACTaGAGAGGGGATGGTGACGGTGTTGTCCTCATCTAC | + |
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Preference number: 6 (lower is better) Translates to: FTNLVIEMSHIH*RGDGDGVVLIY Trigger: GTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTGTATGTGGCTCATCTCTATCACCAAATTAGTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098942.6 ENSMUST00000214149.2 |
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| CDS CAA 72 bp | TGGCTCGCATTCATAATCCCACTGTATTTTACTAATTaGGTGATAGAGATGAGCCACATACACTGCAGAGGG | + |
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Preference number: 6 (lower is better) Translates to: WLAFIIPLYFTN*VIEMSHIHCRG Trigger: CCCTCTGCAGTGTATGTGGCTCATCTCTATCACCAAATTAGTAAAATACAGTGGGATTATGAATGCGAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098942.6 |
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