Pregenerated sensors for SPATS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023935Ensembl transcript IDs: ENSMUST00000024731.9, ENSMUST00000233553.2, ENSMUST00000233769.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCAACAAGGCCAAACATAGTGATTCCTCATTCGAGTCAAACAAATaGTTTAGGACAGAGACAATGTCAAAAGCAAAGAATAAAAACACC | + |
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Preference number: 1 (lower is better) Translates to: FNKAKHSDSSFESNK*FRTETMSKAKNKNT Trigger: GGTGTTTTTATTCTTTGCTTTTGACATTGTCTCTGTCCTAAACCATTTGTTTGACTCGAATGAGGAATCACTATGTTTGGCCTTGTTGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| 3UTR-3UTR CCA 90 bp | AGGGCACCCAGGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAAGCAATGGCAGAGGCTaGCTGGGAGGGCAGTCAGCG | + |
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Preference number: 2 (lower is better) Translates to: RAPRCLLYNQCNFSTHLESNGRG*LGGQSA Trigger: CGCTGACTGCCCTCCCAGCCAGCCTCTGCCATTGCT...TTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACCTGGGTGCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| 3UTR-3UTR CCA 90 bp | AGGGCACCCAGGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAAAAAACACCCAGCAATaGCAGAGGCTGGCTGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: RAPRCLLYNQCNFSTHLEKNTQQ*QRLAGR Trigger: CCTCCCAGCCAGCCTCTGCCATTGCTGGGTGTTTTT...TTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACCTGGGTGCCCT 48% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| 3UTR-3UTR GCA 90 bp | GGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAAGTTTTCACAAGGGCAGTCAGCGAATaGTTGGGGGCTCAATGTCTC | + |
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Preference number: 2 (lower is better) Translates to: GVCFIISATFLHILKVFTRAVSE*LGAQCL Trigger: GAGACATTGAGCCCCCAAGCATTCGCTGACTGCCCT...TGTGAAAACTTTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| 3UTR CCA 72 bp | AAGCAAAGAATAAAAACACCCAGCAATGGCAGAGGCTaGCTGGGAGGGCAGTCAGCGAATGCTTGGGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: KQRIKTPSNGRG*LGGQSANAWGL Trigger: GAGCCCCCAAGCATTCGCTGACTGCCCTCCCAGCCAGCCTCTGCCATTGCTGGGTGTTTTTATTCTTTGCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| 3UTR CCA 72 bp | GCCAAACATAGTGATTCCTCATTCGAGTCAAACAAATaGTTTAGGACAGAGACAATGTCAAAAGCAAAGAAT | + |
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Preference number: 3 (lower is better) Translates to: AKHSDSSFESNK*FRTETMSKAKN Trigger: ATTCTTTGCTTTTGACATTGTCTCTGTCCTAAACCATTTGTTTGACTCGAATGAGGAATCACTATGTTTGGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR TCA 90 bp | TGGCAGAGGCTGGCTGGGAGGGCAGTCAGCGAATGCTTGGGGGCTCAATGTCTCGAGGAACGATTAGACTaGGCAGAGGAAGAGGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: WQRLAGRAVSECLGAQCLEERLD*AEEEEE Trigger: TTCCTCCTCTTCCTCTGCTCAGTCTAATCGTTCCTC...GAGACATTGAGCCCCCAAGCATTCGCTGACTGCCCTCCCAGCCAGCCTCTGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR GCA 90 bp | TGGCAGAGGCTGGCTGGGAGGGCAGTCAGCGAATGCTTGGGGGCTCAATGTCTCTCTAGAGCATCACCGTaGTGGGTATCCTTGGAAGAC | + |
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Preference number: 4 (lower is better) Translates to: WQRLAGRAVSECLGAQCLSRASP*WVSLED Trigger: GTCTTCCAAGGATACCCAGCACGGTGATGCTCTAGA...GAGACATTGAGCCCCCAAGCATTCGCTGACTGCCCTCCCAGCCAGCCTCTGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CCA 90 bp | TGGCAGAGGCTGGCTGGGAGGGCAGTCAGCGAATGCTTGGGGGCTCAATGTCTCCCCCTGGTGTCAATTTaGGGATTCCATTTCTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: WQRLAGRAVSECLGAQCLPLVSI*GFHFWD Trigger: ATCCCAGAAATGGAATCCCCAAATTGACACCAGGGG...GAGACATTGAGCCCCCAAGCATTCGCTGACTGCCCTCCCAGCCAGCCTCTGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR TCA 90 bp | TGGCAGAGGCTGGCTGGGAGGGCAGTCAGCGAATGCTTGGGGGCTCAATGTCTCTGTGGATGTTGCTGCTaGACCTTGGATAAAATGTCC | + |
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Preference number: 4 (lower is better) Translates to: WQRLAGRAVSECLGAQCLCGCCC*TLDKMS Trigger: GGACATTTTATCCAAGGTTCAGCAGCAACATCCACA...GAGACATTGAGCCCCCAAGCATTCGCTGACTGCCCTCCCAGCCAGCCTCTGCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR TCA 90 bp | CCAAACATAGTGATTCCTCATTCGAGTCAAACAAATGGTTTAGGACAGAGACAAGAGGAGGAGGTCTTCTaGCCCAGCTCCGCAGCCGTG | + |
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Preference number: 4 (lower is better) Translates to: PNIVIPHSSQTNGLGQRQEEEVF*PSSAAV Trigger: CACGGCTGCGGAGCTGGGTCAGAAGACCTCCTCCTC...TTGTCTCTGTCCTAAACCATTTGTTTGACTCGAATGAGGAATCACTATGTTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR GCA 90 bp | AGGGCACCCAGGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAGTCCACTGTCCTCTCTaGCACAGACCTCCTGTTGCC | + |
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Preference number: 4 (lower is better) Translates to: RAPRCLLYNQCNFSTHLEVHCPL*HRPPVA Trigger: GGCAACAGGAGGTCTGTGGCAGAGAGGACAGTGGAC...TTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACCTGGGTGCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR GCA 90 bp | AGGGCACCCAGGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAGTCCACTCAGGACGCTaGCCATCTTCTGTCTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: RAPRCLLYNQCNFSTHLEVHSGR*PSSVCE Trigger: TTCACAGACAGAAGATGGGCAGCGTCCTGAGTGGAC...TTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACCTGGGTGCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR TCA 90 bp | AGGGCACCCAGGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAACTGGTCCTTTTGTTCTaGCGAGAGGACGTCCTGTTA | + |
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Preference number: 4 (lower is better) Translates to: RAPRCLLYNQCNFSTHLELVLLF*REDVLL Trigger: TAACAGGACGTCCTCTCGTCAGAACAAAAGGACCAG...TTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACCTGGGTGCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR TCA 90 bp | CCAAACATAGTGATTCCTCATTCGAGTCAAACAAATGGTTTAGGACAGAGACAACCCGGAAGACCCCATTaGAGAAGCACTGCTTTCCAA | + |
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Preference number: 4 (lower is better) Translates to: PNIVIPHSSQTNGLGQRQPGRPH*RSTAFQ Trigger: TTGGAAAGCAGTGCTTCTTCAATGGGGTCTTCCGGG...TTGTCTCTGTCCTAAACCATTTGTTTGACTCGAATGAGGAATCACTATGTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CCA 90 bp | GGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAAGTTTTCACAAGGGAGTCAACACCCTaGGAAGGCCTAGGGACTCAG | + |
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Preference number: 4 (lower is better) Translates to: GVCFIISATFLHILKVFTRESTP*EGLGTQ Trigger: CTGAGTCCCTAGGCCTTCCCAGGGTGTTGACTCCCT...TGTGAAAACTTTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CCA 90 bp | AGGGCACCCAGGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAGTTGCTGCTGAACCTTaGATAAAATGTCCACTCAGG | + |
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Preference number: 4 (lower is better) Translates to: RAPRCLLYNQCNFSTHLEVAAEP*IKCPLR Trigger: CCTGAGTGGACATTTTATCCAAGGTTCAGCAGCAAC...TTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACCTGGGTGCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR TCA 90 bp | CCAAACATAGTGATTCCTCATTCGAGTCAAACAAATGGTTTAGGACAGAGACAAAGGCAGCGAAACTTTTaGGGAACGATTAGACTGAGC | + |
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Preference number: 4 (lower is better) Translates to: PNIVIPHSSQTNGLGQRQRQRNF*GTIRLS Trigger: GCTCAGTCTAATCGTTCCTCAAAAGTTTCGCTGCCT...TTGTCTCTGTCCTAAACCATTTGTTTGACTCGAATGAGGAATCACTATGTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CCA 90 bp | CCAAACATAGTGATTCCTCATTCGAGTCAAACAAATGGTTTAGGACAGAGACAACCCAGAAAGGCAGATTaGGAATTTTTGGAAGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: PNIVIPHSSQTNGLGQRQPRKAD*EFLEVA Trigger: AGCCACTTCCAAAAATTCCCAATCTGCCTTTCTGGG...TTGTCTCTGTCCTAAACCATTTGTTTGACTCGAATGAGGAATCACTATGTTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CCA 90 bp | CCAAACATAGTGATTCCTCATTCGAGTCAAACAAATGGTTTAGGACAGAGACAAAGTTGGAAGCACCAGTaGAGAAGAAACCATGTAGGA | + |
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Preference number: 4 (lower is better) Translates to: PNIVIPHSSQTNGLGQRQSWKHQ*RRNHVG Trigger: TCCTACATGGTTTCTTCTCCACTGGTGCTTCCAACT...TTGTCTCTGTCCTAAACCATTTGTTTGACTCGAATGAGGAATCACTATGTTTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CCA 90 bp | CCAAACATAGTGATTCCTCATTCGAGTCAAACAAATGGTTTAGGACAGAGACAATGGAAGTGGCTCAAGTaGGATAAATGTGTCGAATTT | + |
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Preference number: 4 (lower is better) Translates to: PNIVIPHSSQTNGLGQRQWKWLK*DKCVEF Trigger: AAATTCGACACATTTATCCCACTTGAGCCACTTCCA...TTGTCTCTGTCCTAAACCATTTGTTTGACTCGAATGAGGAATCACTATGTTTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CCA 90 bp | GGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAAGTTTTCACAGGGATATTTTTCCTTTaGGATTTCAGGCAGCGAAAC | + |
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Preference number: 4 (lower is better) Translates to: GVCFIISATFLHILKVFTGIFFL*DFRQRN Trigger: GTTTCGCTGCCTGAAATCCCAAAGGAAAAATATCCC...TGTGAAAACTTTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CCA 90 bp | GGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAAGTTTTCACACTCTTTACTCTGTTCTaGGAACATGTACGGATTATC | + |
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Preference number: 4 (lower is better) Translates to: GVCFIISATFLHILKVFTLFTLF*EHVRII Trigger: GATAATCCGTACATGTTCCCAGAACAGAGTAAAGAG...TGTGAAAACTTTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CCA 90 bp | GGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAAGTTTTCACATGGGGATTCCATTTCTaGGATCAATATCGTATTTCT | + |
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Preference number: 4 (lower is better) Translates to: GVCFIISATFLHILKVFTWGFHF*DQYRIS Trigger: AGAAATACGATATTGATCCCAGAAATGGAATCCCCA...TGTGAAAACTTTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CAA 90 bp | TGGCAGAGGCTGGCTGGGAGGGCAGTCAGCGAATGCTTGGGGGCTCAATGTCTCGCCACAGACCTCCTGTaGCCCCGGAAGACCCCATTG | + |
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Preference number: 5 (lower is better) Translates to: WQRLAGRAVSECLGAQCLATDLL*PRKTPL Trigger: CAATGGGGTCTTCCGGGGCAACAGGAGGTCTGTGGC...GAGACATTGAGCCCCCAAGCATTCGCTGACTGCCCTCCCAGCCAGCCTCTGCCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS CCA 90 bp | GAGCAGCGAGCACCTTTAACCGTGGAGCCATCTCCCCAGTCCCAGTaGAGAAGAAACCATGTAGGAAGGGCATCGGCACCTGCCAGTTGT | + |
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Preference number: 5 (lower is better) Translates to: EQRAPLTVEPSPQSQ*RRNHVGRASAPASC Trigger: ACAACTGGCAGGTGCCGATGCCCTTCCTACATGGTTTCTTCTCCACTGGGACTGGGGAGATGGCTCCACGGTTAAAGGTGCTCGCTGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS-3UTR CAA 90 bp | TGGCAGAGGCTGGCTGGGAGGGCAGTCAGCGAATGCTTGGGGGCTCAATGTCTCTCTTCTGTCTGTGAATaGAGCAGGCTGAATTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: WQRLAGRAVSECLGAQCLSSVCE*SRLNSS Trigger: CGAGGAATTCAGCCTGCTCAATTCACAGACAGAAGA...GAGACATTGAGCCCCCAAGCATTCGCTGACTGCCCTCCCAGCCAGCCTCTGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CAA 90 bp | TGGCAGAGGCTGGCTGGGAGGGCAGTCAGCGAATGCTTGGGGGCTCAATGTCTCTGTTGTCTTGAAAAGTaGGAAGCACCAGTGGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: WQRLAGRAVSECLGAQCLCCLEK*EAPVEK Trigger: CTTCTCCACTGGTGCTTCCAACTTTTCAAGACAACA...GAGACATTGAGCCCCCAAGCATTCGCTGACTGCCCTCCCAGCCAGCCTCTGCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CAA 90 bp | TGGCAGAGGCTGGCTGGGAGGGCAGTCAGCGAATGCTTGGGGGCTCAATGTCTCTCGTTCTTCAAATTGTaGGCTTTTTCCTTCTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: WQRLAGRAVSECLGAQCLSFFKL*AFSFSQ Trigger: CTGGGAGAAGGAAAAAGCCAACAATTTGAAGAACGA...GAGACATTGAGCCCCCAAGCATTCGCTGACTGCCCTCCCAGCCAGCCTCTGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS GCA 90 bp | AATATCGTATTTCTTCTTCCCGAGGCTGTTGTCCACTGTCCTCTCTaGCACAGACCTCCTGTTGCCCCGGAAGACCCCATTGAAGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: NIVFLLPEAVVHCPL*HRPPVAPEDPIEEA Trigger: TGCTTCTTCAATGGGGTCTTCCGGGGCAACAGGAGGTCTGTGGCAGAGAGGACAGTGGACAACAGCCTCGGGAAGAAGAAATACGATATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS TCA 90 bp | AAGGTCCCAGTGAGAAGTTCACCGGAGGCAAAGTTGCTCCCGCTTTaGAGAACTCTTTACTCTGTTCTGGGAACATGTACGGATTATCCC | + |
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Preference number: 5 (lower is better) Translates to: KVPVRSSPEAKLLPL*RTLYSVLGTCTDYP Trigger: GGGATAATCCGTACATGTTCCCAGAACAGAGTAAAGAGTTCTTCAAAGCGGGAGCAACTTTGCCTCCGGTGAACTTCTCACTGGGACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 |
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| CDS GCA 90 bp | GAAGCACCAGTGGAGAAGAAACCATGTAGGAAGGGCATCGGCACCTaGCAGTTGTCAAGCTCCTCGACTTCTTTTATCTCGTTCTTCAAA | + |
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Preference number: 5 (lower is better) Translates to: EAPVEKKPCRKGIGT*QLSSSSTSFISFFK Trigger: TTTGAAGAACGAGATAAAAGAAGTCGAGGAGCTTGACAACTGGCAGGTGCCGATGCCCTTCCTACATGGTTTCTTCTCCACTGGTGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS CCA 90 bp | CGGAGGCAAAGTTGCTCCCGCTTTGAAGAACTCTTTACTCTGTTCTaGGAACATGTACGGATTATCCCCTGGTGTCAATTTGGGGATTCC | + |
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Preference number: 5 (lower is better) Translates to: RRQSCSRFEELFTLF*EHVRIIPWCQFGDS Trigger: GGAATCCCCAAATTGACACCAGGGGATAATCCGTACATGTTCCCAGAACAGAGTAAAGAGTTCTTCAAAGCGGGAGCAACTTTGCCTCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS-3UTR CAA 90 bp | AGGGCACCCAGGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAATTCTTCCCGAGGCTGTaGTCCACTGTCCTCTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: RAPRCLLYNQCNFSTHLEFFPRL*STVLSA Trigger: GGCAGAGAGGACAGTGGACAACAGCCTCGGGAAGAA...TTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACCTGGGTGCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS TCA 90 bp | AAGGCAGAAGTGAGAAGTTCACCGGAGGCAAAGTTGCTCCCGCTTTaGAGAACTCTTTACTCTGTTCTGGGAACATGTACGGATTATCCC | + |
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Preference number: 5 (lower is better) Translates to: KAEVRSSPEAKLLPL*RTLYSVLGTCTDYP Trigger: GGGATAATCCGTACATGTTCCCAGAACAGAGTAAAGAGTTCTTCAAAGCGGGAGCAACTTTGCCTCCGGTGAACTTCTCACTTCTGCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233769.2 |
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| CDS CCA 90 bp | ACATGTACGGATTATCCCCTGGTGTCAATTTGGGGATTCCATTTCTaGGATCAATATCGTATTTCTTCTTCCCGAGGCTGTTGTCCACTG | + |
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Preference number: 5 (lower is better) Translates to: TCTDYPLVSIWGFHF*DQYRISSSRGCCPL Trigger: CAGTGGACAACAGCCTCGGGAAGAAGAAATACGATATTGATCCCAGAAATGGAATCCCCAAATTGACACCAGGGGATAATCCGTACATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS-3UTR CAA 90 bp | CCAAACATAGTGATTCCTCATTCGAGTCAAACAAATGGTTTAGGACAGAGACAACCCCGGAAGACCCCATaGAAGAAGCACTGCTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: PNIVIPHSSQTNGLGQRQPRKTP*KKHCFP Trigger: TGGAAAGCAGTGCTTCTTCAATGGGGTCTTCCGGGG...TTGTCTCTGTCCTAAACCATTTGTTTGACTCGAATGAGGAATCACTATGTTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CAA 90 bp | AGGGCACCCAGGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAATCCCCTGGTGTCAATTaGGGGATTCCATTTCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: RAPRCLLYNQCNFSTHLESPGVN*GIPFLG Trigger: TCCCAGAAATGGAATCCCCAAATTGACACCAGGGGA...TTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACCTGGGTGCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CAA 90 bp | AGGGCACCCAGGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAGCAGATTGGGAATTTTaGGAAGTGGCTCAAGTGGGA | + |
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Preference number: 5 (lower is better) Translates to: RAPRCLLYNQCNFSTHLEADWEF*EVAQVG Trigger: TCCCACTTGAGCCACTTCCAAAAATTCCCAATCTGC...TTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACCTGGGTGCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS CCA 90 bp | TACTCTGTTCTGGGAACATGTACGGATTATCCCCTGGTGTCAATTTaGGGATTCCATTTCTGGGATCAATATCGTATTTCTTCTTCCCGA | + |
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Preference number: 5 (lower is better) Translates to: YSVLGTCTDYPLVSI*GFHFWDQYRISSSR Trigger: TCGGGAAGAAGAAATACGATATTGATCCCAGAAATGGAATCCCCAAATTGACACCAGGGGATAATCCGTACATGTTCCCAGAACAGAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CCA 90 bp | AGTTGTCAAGCTCCTCGACTTCTTTTATCTCGTTCTTCAAATTGTTaGCTTTTTCCTTCTCCCAGAAAGGCAGAAGTGAGAAGTTCACCG | + |
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Preference number: 5 (lower is better) Translates to: SCQAPRLLLSRSSNC*LFPSPRKAEVRSSP Trigger: CGGTGAACTTCTCACTTCTGCCTTTCTGGGAGAAGGAAAAAGCCAACAATTTGAAGAACGAGATAAAAGAAGTCGAGGAGCTTGACAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233769.2 |
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| CDS-3UTR CAA 90 bp | AGGGCACCCAGGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAACGGGATATTTTTCCTTaGGGATTTCAGGCAGCGAAA | + |
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Preference number: 5 (lower is better) Translates to: RAPRCLLYNQCNFSTHLERDIFP*GFQAAK Trigger: TTTCGCTGCCTGAAATCCCAAAGGAAAAATATCCCG...TTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACCTGGGTGCCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CAA 90 bp | GGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAAGTTTTCACAATCGGCACCTGCCAGTaGTCAAGCTCCTCGACTTCT | + |
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Preference number: 5 (lower is better) Translates to: GVCFIISATFLHILKVFTIGTCQ*SSSSTS Trigger: AGAAGTCGAGGAGCTTGACAACTGGCAGGTGCCGAT...TGTGAAAACTTTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS-3UTR CAA 90 bp | CCAAACATAGTGATTCCTCATTCGAGTCAAACAAATGGTTTAGGACAGAGACAATCCCAGAAAGGCAGATaGGGAATTTTTGGAAGTGGC | + |
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Preference number: 5 (lower is better) Translates to: PNIVIPHSSQTNGLGQRQSQKGR*GIFGSG Trigger: GCCACTTCCAAAAATTCCCAATCTGCCTTTCTGGGA...TTGTCTCTGTCCTAAACCATTTGTTTGACTCGAATGAGGAATCACTATGTTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS CCA 90 bp | GAAGAACTCTTTACTCTGTTCTGGGAACATGTACGGATTATCCCCTaGTGTCAATTTGGGGATTCCATTTCTGGGATCAATATCGTATTT | + |
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Preference number: 5 (lower is better) Translates to: EELFTLFWEHVRIIP*CQFGDSISGINIVF Trigger: AAATACGATATTGATCCCAGAAATGGAATCCCCAAATTGACACCAGGGGATAATCCGTACATGTTCCCAGAACAGAGTAAAGAGTTCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS-3UTR CAA 90 bp | GGTGTCTGCTTTATAATCAGTGCAACTTTTCTACACATCTTGAAAGTTTTCACAATCTCGTTCTTCAAATaGTTGGCTTTTTCCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GVCFIISATFLHILKVFTISFFK*LAFSFS Trigger: GGAGAAGGAAAAAGCCAACAATTTGAAGAACGAGAT...TGTGAAAACTTTCAAGATGTGTAGAAAAGTTGCACTGATTATAAAGCAGACACC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024731.9 |
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| CDS TCA 72 bp | AGGGAGTCAACACCCTGGGAAGGCCTAGGGACTCAGTaGCTCTCGGACCTGTTCCGTCAGAAGACGAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: RESTPWEGLGTQ*LSDLFRQKTRG Trigger: GCCTCTCGTCTTCTGACGGAACAGGTCCGAGAGTCACTGAGTCCCTAGGCCTTCCCAGGGTGTTGACTCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CCA 72 bp | GCACCTTTAACCGTGGAGCCATCTCCCCAGTCCCAGTaGAGAAGAAACCATGTAGGAAGGGCATCGGCACCT | + |
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Preference number: 6 (lower is better) Translates to: APLTVEPSPQSQ*RRNHVGRASAP Trigger: AGGTGCCGATGCCCTTCCTACATGGTTTCTTCTCCACTGGGACTGGGGAGATGGCTCCACGGTTAAAGGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS TCA 72 bp | CTGCCACAGACCTCCTGTTGCCCCGGAAGACCCCATTaGAGAAGCACTGCTTTCCAATGTGGTAGGTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: LPQTSCCPGRPH*RSTAFQCGRCG Trigger: TCCACACCTACCACATTGGAAAGCAGTGCTTCTTCAATGGGGTCTTCCGGGGCAACAGGAGGTCTGTGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS TCA 72 bp | ACAGGGGGTTGTGAGCCTCCCTTGGGTGCTGAGAACTaGACTTGTTCCTTCTGGAAGAGCAGCGAGCACCTT | + |
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Preference number: 6 (lower is better) Translates to: TGGCEPPLGAEN*TCSFWKSSEHL Trigger: AAGGTGCTCGCTGCTCTTCCAGAAGGAACAAGTTCAGTTCTCAGCACCCAAGGGAGGCTCACAACCCCCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CCA 72 bp | CTGATGCTGGAACTACAGGGGGTTGTGAGCCTCCCTTaGGTGCTGAGAACTGAACTTGTTCCTTCTGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: LMLELQGVVSLP*VLRTELVPSGR Trigger: TCTTCCAGAAGGAACAAGTTCAGTTCTCAGCACCCAAGGGAGGCTCACAACCCCCTGTAGTTCCAGCATCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CAA 90 bp | ATTCCATTTCTGGGATCAATATCGTATTTCTTCTTCCCGAGGCTGTaGTCCACTGTCCTCTCTGCCACAGACCTCCTGTTGCCCCGGAAG | + |
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Preference number: 6 (lower is better) Translates to: IPFLGSISYFFFPRL*STVLSATDLLLPRK Trigger: CTTCCGGGGCAACAGGAGGTCTGTGGCAGAGAGGACAGTGGACAACAGCCTCGGGAAGAAGAAATACGATATTGATCCCAGAAATGGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS TCA 72 bp | GTTCCGTCAGAAGACGAGAGGCTGGTCCTTTTGTTCTaGCGAGAGGACGTCCTGTTAGCCAAGCAACTTTTA | + |
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Preference number: 6 (lower is better) Translates to: VPSEDERLVLLF*REDVLLAKQLL Trigger: TAAAAGTTGCTTGGCTAACAGGACGTCCTCTCGTCAGAACAAAAGGACCAGCCTCTCGTCTTCTGACGGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CCA 72 bp | TCCAATGTGGTAGGTGTGGATGTTGCTGCTGAACCTTaGATAAAATGTCCACTCAGGACGCTGCCCATCTTC | + |
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Preference number: 6 (lower is better) Translates to: SNVVGVDVAAEP*IKCPLRTLPIF Trigger: GAAGATGGGCAGCGTCCTGAGTGGACATTTTATCCAAGGTTCAGCAGCAACATCCACACCTACCACATTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS TCA 72 bp | GTGAGAAGTTCACCGGAGGCAAAGTTGCTCCCGCTTTaGAGAACTCTTTACTCTGTTCTGGGAACATGTACG | + |
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Preference number: 6 (lower is better) Translates to: VRSSPEAKLLPL*RTLYSVLGTCT Trigger: CGTACATGTTCCCAGAACAGAGTAAAGAGTTCTTCAAAGCGGGAGCAACTTTGCCTCCGGTGAACTTCTCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CAA 72 bp | AAGAAACCATGTAGGAAGGGCATCGGCACCTGCCAGTaGTCAAGCTCCTCGACTTCTTTTATCTCGTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: KKPCRKGIGTCQ*SSSSTSFISFF Trigger: GAAGAACGAGATAAAAGAAGTCGAGGAGCTTGACAACTGGCAGGTGCCGATGCCCTTCCTACATGGTTTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CAA 90 bp | CCAGTGGAGAAGAAACCATGTAGGAAGGGCATCGGCACCTGCCAGTaGTCAAGCTCCTCGACTTCTTTTATCTCGTTCTTCAAATTGTTG | + |
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Preference number: 6 (lower is better) Translates to: PVEKKPCRKGIGTCQ*SSSSTSFISFFKLL Trigger: CAACAATTTGAAGAACGAGATAAAAGAAGTCGAGGAGCTTGACAACTGGCAGGTGCCGATGCCCTTCCTACATGGTTTCTTCTCCACTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CAA 90 bp | AAAGGCAGAAGTGAGAAGTTCACCGGAGGCAAAGTTGCTCCCGCTTaGAAGAACTCTTTACTCTGTTCTGGGAACATGTACGGATTATCC | + |
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Preference number: 6 (lower is better) Translates to: KGRSEKFTGGKVAPA*KNSLLCSGNMYGLS Trigger: GGATAATCCGTACATGTTCCCAGAACAGAGTAAAGAGTTCTTCAAAGCGGGAGCAACTTTGCCTCCGGTGAACTTCTCACTTCTGCCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233769.2 |
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| CDS CAA 72 bp | AGTGAGAAGTTCACCGGAGGCAAAGTTGCTCCCGCTTaGAAGAACTCTTTACTCTGTTCTGGGAACATGTAC | + |
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Preference number: 6 (lower is better) Translates to: SEKFTGGKVAPA*KNSLLCSGNMY Trigger: GTACATGTTCCCAGAACAGAGTAAAGAGTTCTTCAAAGCGGGAGCAACTTTGCCTCCGGTGAACTTCTCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CCA 72 bp | AGTTGCTCCCGCTTTGAAGAACTCTTTACTCTGTTCTaGGAACATGTACGGATTATCCCCTGGTGTCAATTT | + |
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Preference number: 6 (lower is better) Translates to: SCSRFEELFTLF*EHVRIIPWCQF Trigger: AAATTGACACCAGGGGATAATCCGTACATGTTCCCAGAACAGAGTAAAGAGTTCTTCAAAGCGGGAGCAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CAA 90 bp | TTACTCTGTTCTGGGAACATGTACGGATTATCCCCTGGTGTCAATTaGGGGATTCCATTTCTGGGATCAATATCGTATTTCTTCTTCCCG | + |
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Preference number: 6 (lower is better) Translates to: LLCSGNMYGLSPGVN*GIPFLGSISYFFFP Trigger: CGGGAAGAAGAAATACGATATTGATCCCAGAAATGGAATCCCCAAATTGACACCAGGGGATAATCCGTACATGTTCCCAGAACAGAGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CAA 90 bp | TGCCAGTTGTCAAGCTCCTCGACTTCTTTTATCTCGTTCTTCAAATaGTTGGCTTTTTCCTTCTCCCAGAAAGGCAGAAGTGAGAAGTTC | + |
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Preference number: 6 (lower is better) Translates to: CQLSSSSTSFISFFK*LAFSFSQKGRSEKF Trigger: GAACTTCTCACTTCTGCCTTTCTGGGAGAAGGAAAAAGCCAACAATTTGAAGAACGAGATAAAAGAAGTCGAGGAGCTTGACAACTGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233769.2 |
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| CDS CCA 72 bp | CTGGGAACATGTACGGATTATCCCCTGGTGTCAATTTaGGGATTCCATTTCTGGGATCAATATCGTATTTCT | + |
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Preference number: 6 (lower is better) Translates to: LGTCTDYPLVSI*GFHFWDQYRIS Trigger: AGAAATACGATATTGATCCCAGAAATGGAATCCCCAAATTGACACCAGGGGATAATCCGTACATGTTCCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CCA 72 bp | TTTACTCTGTTCTGGGAACATGTACGGATTATCCCCTaGTGTCAATTTGGGGATTCCATTTCTGGGATCAAT | + |
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Preference number: 6 (lower is better) Translates to: FTLFWEHVRIIP*CQFGDSISGIN Trigger: ATTGATCCCAGAAATGGAATCCCCAAATTGACACCAGGGGATAATCCGTACATGTTCCCAGAACAGAGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 ENSMUST00000233769.2 |
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| CDS CAA 72 bp | TCAAGCTCCTCGACTTCTTTTATCTCGTTCTTCAAATaGTTGGCTTTTTCCTTCTCCCAGAAAGGCAGATTG | + |
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Preference number: 6 (lower is better) Translates to: SSSSTSFISFFK*LAFSFSQKGRL Trigger: CAATCTGCCTTTCTGGGAGAAGGAAAAAGCCAACAATTTGAAGAACGAGATAAAAGAAGTCGAGGAGCTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 |
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| CDS CAA 72 bp | TCAAGCTCCTCGACTTCTTTTATCTCGTTCTTCAAATaGTTGGCTTTTTCCTTCTCCCAGAAAGGCAGAAGT | + |
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Preference number: 6 (lower is better) Translates to: SSSSTSFISFFK*LAFSFSQKGRS Trigger: ACTTCTGCCTTTCTGGGAGAAGGAAAAAGCCAACAATTTGAAGAACGAGATAAAAGAAGTCGAGGAGCTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233769.2 |
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| CDS CAA 90 bp | TGCCAGTTGTCAAGCTCCTCGACTTCTTTTATCTCGTTCTTCAAATaGTTGGCTTTTTCCTTCTCCCAGAAAGGCAGATTGGGAATTTTT | + |
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Preference number: 6 (lower is better) Translates to: CQLSSSSTSFISFFK*LAFSFSQKGRLGIF Trigger: AAAAATTCCCAATCTGCCTTTCTGGGAGAAGGAAAAAGCCAACAATTTGAAGAACGAGATAAAAGAAGTCGAGGAGCTTGACAACTGGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024731.9 ENSMUST00000233553.2 |
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