Pregenerated sensors for SPATC1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009115Ensembl transcript IDs: ENSMUST00000009259.5, ENSMUST00000105414.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGTGCGCAGTCCGGGCGGCTGGATGCCCTGGGCAAGCGCAGACGTaGAGGAGGCCTCTCCCCACTGTAGCTGGGCAGACAGCTTCCATG | + |
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Preference number: 1 (lower is better) Translates to: LCAVRAAGCPGQAQT*RRPLPTVAGQTASM Trigger: CATGGAAGCTGTCTGCCCAGCTACAGTGGGGAGAGGCCTCCTCCACGTCTGCGCTTGCCCAGGGCATCCAGCCGCCCGGACTGCGCACAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| 3UTR GCA 90 bp | GAACACCGGGTGCACTTCGCGGCTGTAGCCCAGCTTCTCCAGCCGTaGCGTCAGAGTCAGATAGCGATGCGTCAGCTCACGCAGCTTCTT | + |
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Preference number: 1 (lower is better) Translates to: EHRVHFAAVAQLLQP*RQSQIAMRQLTQLL Trigger: AAGAAGCTGCGTGAGCTGACGCATCGCTATCTGACTCTGACGGCACGGCTGGAGAAGCTGGGCTACAGCCGCGAAGTGCACCCGGTGTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| 3UTR GCA 90 bp | GGCACAATGTCAATGACTAGTTTGCGCAGGGCAGCCGGGCTGCTGTaGAGTGGGTTGGCCCGCAAGTCTGGACGCTGCTTCAGGATGCCA | + |
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Preference number: 1 (lower is better) Translates to: GTMSMTSLRRAAGLL*SGLARKSGRCFRMP Trigger: TGGCATCCTGAAGCAGCGTCCAGACTTGCGGGCCAACCCACTGCACAGCAGCCCGGCTGCCCTGCGCAAACTAGTCATTGACATTGTGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| 3UTR-3UTR GCA 90 bp | GGAAGGGTGAGGCAAGCGGCTCACCAGGCAAAGAGTGGTTTACTGTCCTCCTTGGCAGCCGGGCTGCTGTaGAGTGGGTTGGCCCGCAAG | + |
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Preference number: 2 (lower is better) Translates to: GRVRQAAHQAKSGLLSSLAAGLL*SGLARK Trigger: CTTGCGGGCCAACCCACTGCACAGCAGCCCGGCTGC...CAAGGAGGACAGTAAACCACTCTTTGCCTGGTGAGCCGCTTGCCTCACCCTTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| 3UTR CAA 90 bp | GTCAGCTCACGCAGCTTCTTCTCATCCACGGAGCCATCTAGGGACTaGATAGAGGTCTGCTTGATCTTCTCAGGAATGTTGGACACTGTG | + |
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Preference number: 2 (lower is better) Translates to: VSSRSFFSSTEPSRD*IEVCLIFSGMLDTV Trigger: CACAGTGTCCAACATTCCTGAGAAGATCAAGCAGACCTCTATCAAGTCCCTAGATGGCTCCGTGGATGAGAAGAAGCTGCGTGAGCTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| 3UTR GCA 72 bp | GGTGCCCGTTGGCTGTGCGCAGTCCGGGCGGCTGGATaGCCTGGGCAAGCGCAGACGTGGAGGAGGCCTCTC | + |
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Preference number: 3 (lower is better) Translates to: GARWLCAVRAAG*PGQAQTWRRPL Trigger: GAGAGGCCTCCTCCACGTCTGCGCTTGCCCAGGGCATCCAGCCGCCCGGACTGCGCACAGCCAACGGGCACC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| 3UTR CCA 72 bp | AACAGGTGCCCGTTGGCTGTGCGCAGTCCGGGCGGCTaGATGCCCTGGGCAAGCGCAGACGTGGAGGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: NRCPLAVRSPGG*MPWASADVEEA Trigger: GGCCTCCTCCACGTCTGCGCTTGCCCAGGGCATCCAGCCGCCCGGACTGCGCACAGCCAACGGGCACCTGTT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| 3UTR CCA 72 bp | GTCCGGGCGGCTGGATGCCCTGGGCAAGCGCAGACGTaGAGGAGGCCTCTCCCCACTGTAGCTGGGCAGACA | + |
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Preference number: 3 (lower is better) Translates to: VRAAGCPGQAQT*RRPLPTVAGQT Trigger: TGTCTGCCCAGCTACAGTGGGGAGAGGCCTCCTCCACGTCTGCGCTTGCCCAGGGCATCCAGCCGCCCGGAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| 3UTR GCA 72 bp | TCAATGACTAGTTTGCGCAGGGCAGCCGGGCTGCTGTaGAGTGGGTTGGCCCGCAAGTCTGGACGCTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: SMTSLRRAAGLL*SGLARKSGRCF Trigger: GAAGCAGCGTCCAGACTTGCGGGCCAACCCACTGCACAGCAGCCCGGCTGCCCTGCGCAAACTAGTCATTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| 3UTR CCA 72 bp | AGCTGGGCAGACAGCTTCCATGCGGGAGGACGCGGGTaGCCCCCGGGTTTGGAACAAACACGTTTATTGCCG | + |
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Preference number: 3 (lower is better) Translates to: SWADSFHAGGRG*PPGLEQTRLLP Trigger: CGGCAATAAACGTGTTTGTTCCAAACCCGGGGGCCACCCGCGTCCTCCCGCATGGAAGCTGTCTGCCCAGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| 3UTR CCA 72 bp | AGCCGGGCTGCTGTGCAGTGGGTTGGCCCGCAAGTCTaGACGCTGCTTCAGGATGCCATAGGTATTGATGAG | + |
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Preference number: 3 (lower is better) Translates to: SRAAVQWVGPQV*TLLQDAIGIDE Trigger: CTCATCAATACCTATGGCATCCTGAAGCAGCGTCCAGACTTGCGGGCCAACCCACTGCACAGCAGCCCGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| CDS-3UTR GCA 90 bp | CTCCCCACTGTAGCTGGGCAGACAGCTTCCATGCGGGAGGACGCGGGTGGCCCCGCAGCCGGGCTGCTGTaGAGTGGGTTGGCCCGCAAG | + |
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Preference number: 4 (lower is better) Translates to: LPTVAGQTASMREDAGGPAAGLL*SGLARK Trigger: CTTGCGGGCCAACCCACTGCACAGCAGCCCGGCTGC...GGGGCCACCCGCGTCCTCCCGCATGGAAGCTGTCTGCCCAGCTACAGTGGGGAG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR CCA 90 bp | CACTGTAGCTGGGCAGACAGCTTCCATGCGGGAGGACGCGGGTGGCCCCCGGGTCGGGCTGCTGTGCAGTaGGTTGGCCCGCAAGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: HCSWADSFHAGGRGWPPGRAAVQ*VGPQVW Trigger: CCAGACTTGCGGGCCAACCCACTGCACAGCAGCCCG...ACCCGGGGGCCACCCGCGTCCTCCCGCATGGAAGCTGTCTGCCCAGCTACAGTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR GCA 90 bp | CACTGTAGCTGGGCAGACAGCTTCCATGCGGGAGGACGCGGGTGGCCCCCGGGTTCAGCCAGGGAGTCCTaGAAGGGACTCAGGAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: HCSWADSFHAGGRGWPPGSARES*KGLRSG Trigger: CCCGCTCCTGAGTCCCTTGCAGGACTCCCTGGCTGA...ACCCGGGGGCCACCCGCGTCCTCCCGCATGGAAGCTGTCTGCCCAGCTACAGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR CCA 90 bp | AACAGGTGCCCGTTGGCTGTGCGCAGTCCGGGCGGCTGGATGCCCTGGGCAAGCAGGCTTCGTCCTCACTaGAGAGTGGGGCGTGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: NRCPLAVRSPGGWMPWASRLRPH*RVGRGS Trigger: GCTCCCACGCCCCACTCTCCAGTGAGGACGAAGCCT...GCTTGCCCAGGGCATCCAGCCGCCCGGACTGCGCACAGCCAACGGGCACCTGTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR CCA 90 bp | CACTGTAGCTGGGCAGACAGCTTCCATGCGGGAGGACGCGGGTGGCCCCCGGGTCTGGAGAGTGGGGCGTaGGAGCATAGTAGGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: HCSWADSFHAGGRGWPPGLESGA*EHSRSS Trigger: GGAGGACCTACTATGCTCCCACGCCCCACTCTCCAG...ACCCGGGGGCCACCCGCGTCCTCCCGCATGGAAGCTGTCTGCCCAGCTACAGTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR CCA 90 bp | CACTGTAGCTGGGCAGACAGCTTCCATGCGGGAGGACGCGGGTGGCCCCCGGGTGAGGCGAGTCACCCCTaGGAACACATAGGCCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: HCSWADSFHAGGRGWPPGEASHP*EHIGQD Trigger: ATCCTGGCCTATGTGTTCCCAGGGGTGACTCGCCTC...ACCCGGGGGCCACCCGCGTCCTCCCGCATGGAAGCTGTCTGCCCAGCTACAGTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR CCA 90 bp | AGGAGGCCTCTCCCCACTGTAGCTGGGCAGACAGCTTCCATGCGGGAGGACGCGGAGGATGTCGGTAGCTaGGAGGGCGTGTCAGGGACA | + |
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Preference number: 4 (lower is better) Translates to: RRPLPTVAGQTASMREDAEDVGS*EGVSGT Trigger: TGTCCCTGACACGCCCTCCCAGCTACCGACATCCTC...CGCGTCCTCCCGCATGGAAGCTGTCTGCCCAGCTACAGTGGGGAGAGGCCTCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR GCA 90 bp | ACGTGGAGGAGGCCTCTCCCCACTGTAGCTGGGCAGACAGCTTCCATGCGGGAGTTCAGGAGGCGCACCTaGTTCTTCAGGTCTGCGTTC | + |
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Preference number: 4 (lower is better) Translates to: TWRRPLPTVAGQTASMREFRRRT*FFRSAF Trigger: GAACGCAGACCTGAAGAAGCAGGTGCGCCTCCTGAA...CTCCCGCATGGAAGCTGTCTGCCCAGCTACAGTGGGGAGAGGCCTCCTCCACGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR TCA 90 bp | AATAAGGCAACAGGTGCCCGTTGGCTGTGCGCAGTCCGGGCGGCTGGATGCCCTGAATGTTGGACACTGTaGAACCGTAGAGGCGAGTCA | + |
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Preference number: 4 (lower is better) Translates to: NKATGARWLCAVRAAGCPECWTL*NRRGES Trigger: TGACTCGCCTCTACGGTTTCACAGTGTCCAACATTC...AGGGCATCCAGCCGCCCGGACTGCGCACAGCCAACGGGCACCTGTTGCCTTATT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR TCA 90 bp | TCCATGCGGGAGGACGCGGGTGGCCCCCGGGTTTGGAACAAACACGTTTATTGCGCGGCACAATGTCAATaGCTAGTTTGCGCAGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: SMREDAGGPRVWNKHVYCAAQCQ*LVCAGQ Trigger: CTGCCCTGCGCAAACTAGTCATTGACATTGTGCCGC...GCAATAAACGTGTTTGTTCCAAACCCGGGGGCCACCCGCGTCCTCCCGCATGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR CCA 90 bp | CCGTGCCGTCAGAGTCAGATAGCGATGCGTCAGCTCACGCAGCTTCTTCTCATCGAGGATGTCGGTAGCTaGGAGGGCGTGTCAGGGACA | + |
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Preference number: 4 (lower is better) Translates to: PCRQSQIAMRQLTQLLLIEDVGS*EGVSGT Trigger: TGTCCCTGACACGCCCTCCCAGCTACCGACATCCTC...GATGAGAAGAAGCTGCGTGAGCTGACGCATCGCTATCTGACTCTGACGGCACGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| CDS-3UTR TCA 90 bp | CTTTTAATAAGGCAACAGGTGCCCGTTGGCTGTGCGCAGTCCGGGCGGCTGGATCCTGGCAACTCTCACTaGGCAGTCTCTTCAGCATCT | + |
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Preference number: 4 (lower is better) Translates to: LLIRQQVPVGCAQSGRLDPGNSH*AVSSAS Trigger: AGATGCTGAAGAGACTGCTCAGTGAGAGTTGCCAGG...ATCCAGCCGCCCGGACTGCGCACAGCCAACGGGCACCTGTTGCCTTATTAAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR TCA 90 bp | GGTGGCCCCCGGGTTTGGAACAAACACGTTTATTGCCGGAAGGGTGAGGCAAGCGACTTGAAAGGCATCTaGGAGGTGGTTGCACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: GGPRVWNKHVYCRKGEASDLKGI*EVVAQP Trigger: AGGCTGTGCAACCACCTCTCAGATGCCTTTCAAGTC...GCTTGCCTCACCCTTCCGGCAATAAACGTGTTTGTTCCAAACCCGGGGGCCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR GCA 90 bp | TCCTTGGAAAGCTCACATAGGCAATTCAGCAGTAGCAGGGAGTCACCCAGGAACTCAGCCAGGGAGTCCTaGAAGGGACTCAGGAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: SLESSHRQFSSSRESPRNSARES*KGLRSG Trigger: CCCGCTCCTGAGTCCCTTGCAGGACTCCCTGGCTGA...GTTCCTGGGTGACTCCCTGCTACTGCTGAATTGCCTATGTGAGCTTTCCAAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| CDS-3UTR CCA 90 bp | CGCAGCTTCTTCTCATCCACGGAGCCATCTAGGGACTTGATAGAGGTCTGCTTGCTGGAGAGTGGGGCGTaGGAGCATAGTAGGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: RSFFSSTEPSRDLIEVCLLESGA*EHSRSS Trigger: GGAGGACCTACTATGCTCCCACGCCCCACTCTCCAG...CAAGCAGACCTCTATCAAGTCCCTAGATGGCTCCGTGGATGAGAAGAAGCTGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| CDS-3UTR CCA 90 bp | ACGCGGGTGGCCCCCGGGTTTGGAACAAACACGTTTATTGCCGGAAGGGTGAGGTCACCAGGCAAAGAGTaGTTTACTGTCCTCCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: TRVAPGFGTNTFIAGRVRSPGKE*FTVLLG Trigger: TCCAAGGAGGACAGTAAACCACTCTTTGCCTGGTGA...CCTCACCCTTCCGGCAATAAACGTGTTTGTTCCAAACCCGGGGGCCACCCGCGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR TCA 90 bp | GCCATAGGTATTGATGAGAAACTCACTGAACACCGGGTGCACTTCGCGGCTGTAGACTTGAAAGGCATCTaGGAGGTGGTTGCACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: AIGIDEKLTEHRVHFAAVDLKGI*EVVAQP Trigger: AGGCTGTGCAACCACCTCTCAGATGCCTTTCAAGTC...TACAGCCGCGAAGTGCACCCGGTGTTCAGTGAGTTTCTCATCAATACCTATGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| CDS-3UTR CCA 90 bp | GGTGGCCCCCGGGTTTGGAACAAACACGTTTATTGCCGGAAGGGTGAGGCAAGCGTTTACTGTCCTCCTTaGAAAGCTCACATAGGCAAT | + |
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Preference number: 4 (lower is better) Translates to: GGPRVWNKHVYCRKGEASVYCPP*KAHIGN Trigger: ATTGCCTATGTGAGCTTTCCAAGGAGGACAGTAAAC...GCTTGCCTCACCCTTCCGGCAATAAACGTGTTTGTTCCAAACCCGGGGGCCACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR GCA 90 bp | TTCTCATCCACGGAGCCATCTAGGGACTTGATAGAGGTCTGCTTGATCTTCTCATTCAGGAGGCGCACCTaGTTCTTCAGGTCTGCGTTC | + |
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Preference number: 4 (lower is better) Translates to: FSSTEPSRDLIEVCLIFSFRRRT*FFRSAF Trigger: GAACGCAGACCTGAAGAAGCAGGTGCGCCTCCTGAA...TGAGAAGATCAAGCAGACCTCTATCAAGTCCCTAGATGGCTCCGTGGATGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| CDS-3UTR TCA 90 bp | TTCTCATCCACGGAGCCATCTAGGGACTTGATAGAGGTCTGCTTGATCTTCTCACCTGGCAACTCTCACTaGGCAGTCTCTTCAGCATCT | + |
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Preference number: 4 (lower is better) Translates to: FSSTEPSRDLIEVCLIFSPGNSH*AVSSAS Trigger: AGATGCTGAAGAGACTGCTCAGTGAGAGTTGCCAGG...TGAGAAGATCAAGCAGACCTCTATCAAGTCCCTAGATGGCTCCGTGGATGAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| 3UTR CAA 72 bp | TCCACGGAGCCATCTAGGGACTTGATAGAGGTCTGCTaGATCTTCTCAGGAATGTTGGACACTGTGAAACCG | + |
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Preference number: 4 (lower is better) Translates to: STEPSRDLIEVC*IFSGMLDTVKP Trigger: CGGTTTCACAGTGTCCAACATTCCTGAGAAGATCAAGCAGACCTCTATCAAGTCCCTAGATGGCTCCGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| 3UTR CAA 72 bp | CGCAGCTTCTTCTCATCCACGGAGCCATCTAGGGACTaGATAGAGGTCTGCTTGATCTTCTCAGGAATGTTG | + |
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Preference number: 4 (lower is better) Translates to: RSFFSSTEPSRD*IEVCLIFSGML Trigger: CAACATTCCTGAGAAGATCAAGCAGACCTCTATCAAGTCCCTAGATGGCTCCGTGGATGAGAAGAAGCTGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| CDS-3UTR CAA 90 bp | GAGGAGGCCTCTCCCCACTGTAGCTGGGCAGACAGCTTCCATGCGGGAGGACGCCTGCTGTGCAGTGGGTaGGCCCGCAAGTCTGGACGC | + |
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Preference number: 5 (lower is better) Translates to: EEASPHCSWADSFHAGGRLLCSG*ARKSGR Trigger: GCGTCCAGACTTGCGGGCCAACCCACTGCACAGCAG...GCGTCCTCCCGCATGGAAGCTGTCTGCCCAGCTACAGTGGGGAGAGGCCTCCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR CAA 90 bp | AATAAGGCAACAGGTGCCCGTTGGCTGTGCGCAGTCCGGGCGGCTGGATGCCCTGCATCTGAGAGGTGGTaGCACAGCCTGGGGAGGCTT | + |
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Preference number: 5 (lower is better) Translates to: NKATGARWLCAVRAAGCPASERW*HSLGRL Trigger: AAGCCTCCCCAGGCTGTGCAACCACCTCTCAGATGC...AGGGCATCCAGCCGCCCGGACTGCGCACAGCCAACGGGCACCTGTTGCCTTATT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS CCA 90 bp | GTTGCACAGCCTGGGGAGGCTTCGTCCTCACTGGAGAGTGGGGCGTaGGAGCATAGTAGGTCCTCCAGAGAGGATGTCGGTAGCTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: VAQPGEASSSLESGA*EHSRSSREDVGSWE Trigger: CTCCCAGCTACCGACATCCTCTCTGGAGGACCTACTATGCTCCCACGCCCCACTCTCCAGTGAGGACGAAGCCTCCCCAGGCTGTGCAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009259.5 ENSMUST00000105414.2 |
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| CDS CCA 90 bp | GGGGCGTGGGAGCATAGTAGGTCCTCCAGAGAGGATGTCGGTAGCTaGGAGGGCGTGTCAGGGACACCGGCAAACCTTCCAAAATCTGGA | + |
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Preference number: 5 (lower is better) Translates to: GAWEHSRSSREDVGS*EGVSGTPANLPKSG Trigger: TCCAGATTTTGGAAGGTTTGCCGGTGTCCCTGACACGCCCTCCCAGCTACCGACATCCTCTCTGGAGGACCTACTATGCTCCCACGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009259.5 ENSMUST00000105414.2 |
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| CDS-3UTR CAA 90 bp | TCTCCAGCCGTGCCGTCAGAGTCAGATAGCGATGCGTCAGCTCACGCAGCTTCTGCATCTGAGAGGTGGTaGCACAGCCTGGGGAGGCTT | + |
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Preference number: 5 (lower is better) Translates to: SPAVPSESDSDASAHAASASERW*HSLGRL Trigger: AAGCCTCCCCAGGCTGTGCAACCACCTCTCAGATGC...AGAAGCTGCGTGAGCTGACGCATCGCTATCTGACTCTGACGGCACGGCTGGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| CDS GCA 90 bp | GAGATTTCCCTGGGCTCAAGCAGTGTTTTGTCAGCCAGGGAGTCCTaGAAGGGACTCAGGAGCGGGGACAGCTTCCTGTCTGCAATCCGC | + |
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Preference number: 5 (lower is better) Translates to: EISLGSSSVLSARES*KGLRSGDSFLSAIR Trigger: GCGGATTGCAGACAGGAAGCTGTCCCCGCTCCTGAGTCCCTTGCAGGACTCCCTGGCTGACAAAACACTGCTTGAGCCCAGGGAAATCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009259.5 ENSMUST00000105414.2 |
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| CDS-3UTR CAA 90 bp | TCCATGCGGGAGGACGCGGGTGGCCCCCGGGTTTGGAACAAACACGTTTATTGCGAGTCACCCAGGAACTaGGGCGGCACAATGTCAATG | + |
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Preference number: 5 (lower is better) Translates to: SMREDAGGPRVWNKHVYCESPRN*GGTMSM Trigger: CATTGACATTGTGCCGCCCAAGTTCCTGGGTGACTC...GCAATAAACGTGTTTGTTCCAAACCCGGGGGCCACCCGCGTCCTCCCGCATGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS TCA 90 bp | CGCGAGTGTAGTTCTGAAGGGCTGAGGAAGGACTTGAAAGGCATCTaGGAGGTGGTTGCACAGCCTGGGGAGGCTTCGTCCTCACTGGAG | + |
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Preference number: 5 (lower is better) Translates to: RECSSEGLRKDLKGI*EVVAQPGEASSSLE Trigger: CTCCAGTGAGGACGAAGCCTCCCCAGGCTGTGCAACCACCTCTCAGATGCCTTTCAAGTCCTTCCTCAGCCCTTCAGAACTACACTCGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009259.5 ENSMUST00000105414.2 |
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| CDS CCA 90 bp | CTCAGGAATGTTGGACACTGTGAAACCGTAGAGGCGAGTCACCCCTaGGAACACATAGGCCAGGATACGCCGGTCAAGCTGGAACGCGAT | + |
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Preference number: 5 (lower is better) Translates to: LRNVGHCETVEASHP*EHIGQDTPVKLERD Trigger: ATCGCGTTCCAGCTTGACCGGCGTATCCTGGCCTATGTGTTCCCAGGGGTGACTCGCCTCTACGGTTTCACAGTGTCCAACATTCCTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS-3UTR CAA 90 bp | ACGCGGGTGGCCCCCGGGTTTGGAACAAACACGTTTATTGCCGGAAGGGTGAGGGGTTTACTGTCCTCCTaGGAAAGCTCACATAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: TRVAPGFGTNTFIAGRVRGLLSS*ESSHRQ Trigger: TTGCCTATGTGAGCTTTCCAAGGAGGACAGTAAACC...CCTCACCCTTCCGGCAATAAACGTGTTTGTTCCAAACCCGGGGGCCACCCGCGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS CCA 72 bp | GGGCGTGTCAGGGACACCGGCAAACCTTCCAAAATCTaGACCTCCATTCCCTGGGGAGCAGGCCTCAGGGTA | + |
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Preference number: 6 (lower is better) Translates to: GRVRDTGKPSKI*TSIPWGAGLRV Trigger: TACCCTGAGGCCTGCTCCCCAGGGAATGGAGGTCCAGATTTTGGAAGGTTTGCCGGTGTCCCTGACACGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009259.5 ENSMUST00000105414.2 |
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| CDS CCA 72 bp | ACCGGCAAACCTTCCAAAATCTGGACCTCCATTCCCTaGGGAGCAGGCCTCAGGGTAGGTAGGGACCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: TGKPSKIWTSIP*GAGLRVGRDLG Trigger: CCCAAGGTCCCTACCTACCCTGAGGCCTGCTCCCCAGGGAATGGAGGTCCAGATTTTGGAAGGTTTGCCGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009259.5 ENSMUST00000105414.2 |
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| CDS CCA 72 bp | GAGCATAGTAGGTCCTCCAGAGAGGATGTCGGTAGCTaGGAGGGCGTGTCAGGGACACCGGCAAACCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: EHSRSSREDVGS*EGVSGTPANLP Trigger: TGGAAGGTTTGCCGGTGTCCCTGACACGCCCTCCCAGCTACCGACATCCTCTCTGGAGGACCTACTATGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009259.5 ENSMUST00000105414.2 |
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| CDS CAA 90 bp | CACACCTTCTTAGGTCTCGAGATTTCCCTGGGCTCAAGCAGTGTTTaGTCAGCCAGGGAGTCCTGCAAGGGACTCAGGAGCGGGGACAGC | + |
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Preference number: 6 (lower is better) Translates to: HTFLGLEISLGSSSV*SARESCKGLRSGDS Trigger: GCTGTCCCCGCTCCTGAGTCCCTTGCAGGACTCCCTGGCTGACAAAACACTGCTTGAGCCCAGGGAAATCTCGAGACCTAAGAAGGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS CCA 72 bp | GTTGGACACTGTGAAACCGTAGAGGCGAGTCACCCCTaGGAACACATAGGCCAGGATACGCCGGTCAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: VGHCETVEASHP*EHIGQDTPVKL Trigger: CAGCTTGACCGGCGTATCCTGGCCTATGTGTTCCCAGGGGTGACTCGCCTCTACGGTTTCACAGTGTCCAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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| CDS CAA 90 bp | GATCTCTTCTTAGGTCTCGAGATTTCCCTGGGCTCAAGCAGTGTTTaGTCAGCCAGGGAGTCCTGCAAGGGACTCAGGAGCGGGGACAGC | + |
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Preference number: 6 (lower is better) Translates to: DLFLGLEISLGSSSV*SARESCKGLRSGDS Trigger: GCTGTCCCCGCTCCTGAGTCCCTTGCAGGACTCCCTGGCTGACAAAACACTGCTTGAGCCCAGGGAAATCTCGAGACCTAAGAAGAGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105414.2 |
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| CDS TCA 72 bp | AGTTCTGAAGGGCTGAGGAAGGACTTGAAAGGCATCTaGGAGGTGGTTGCACAGCCTGGGGAGGCTTCGTCC | + |
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Preference number: 6 (lower is better) Translates to: SSEGLRKDLKGI*EVVAQPGEASS Trigger: GGACGAAGCCTCCCCAGGCTGTGCAACCACCTCTCAGATGCCTTTCAAGTCCTTCCTCAGCCCTTCAGAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009259.5 ENSMUST00000105414.2 |
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| CDS CAA 72 bp | TTAGGTCTCGAGATTTCCCTGGGCTCAAGCAGTGTTTaGTCAGCCAGGGAGTCCTGCAAGGGACTCAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: LGLEISLGSSSV*SARESCKGLRS Trigger: GCTCCTGAGTCCCTTGCAGGACTCCCTGGCTGACAAAACACTGCTTGAGCCCAGGGAAATCTCGAGACCTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009259.5 ENSMUST00000105414.2 |
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| CDS TCA 72 bp | CATCCTTCTCAGCACCCGAAAAACTCTGGATCTCATTaGGGTAATAGGTCCTCCTGCTCCTATCCCCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: HPSQHPKNSGSH*GNRSSCSYPQW Trigger: CCACTGGGGATAGGAGCAGGAGGACCTATTACCTCAATGAGATCCAGAGTTTTTCGGGTGCTGAGAAGGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009259.5 |
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