Pregenerated sensors for SPATA9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021590Ensembl transcript IDs: ENSMUST00000022081.3, ENSMUST00000225553.2
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ATGATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATTTTATGCCAGCCGCGGCTaGAGAAGCTTGGCCACTGAC | + |
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Preference number: 4 (lower is better) Translates to: MIQEDDVIVFPTLSLLKFYASRG*RSLATD Trigger: GTCAGTGGCCAAGCTTCTGCAGCCGCGGCTGGCATA...AAATTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTATCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR CCA 90 bp | ATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATTTACAGCGGCTGCAGAAGCTTaGCCACTGACTTGGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: IQEDDVIVFPTLSLLKFTAAAEA*PLTWRS Trigger: GCTCCTCCAAGTCAGTGGCCAAGCTTCTGCAGCCGC...TGTAAATTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR CCA 90 bp | CATTCAGCTTATATAAATTGGTCCTCTGGTATGTCTGATGAAATTTACCTGTGGGCTTGGCCACTGACTTaGAGGAGCTGGATATGTGGT | + |
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Preference number: 4 (lower is better) Translates to: HSAYINWSSGMSDEIYLWAWPLT*RSWICG Trigger: ACCACATATCCAGCTCCTCCAAGTCAGTGGCCAAGC...CCACAGGTAAATTTCATCAGACATACCAGAGGACCAATTTATATAAGCTGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR GCA 90 bp | ACAATGATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATGGATCTTGTTACTCTaGTTGTTGGCAGGAGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: TMIQEDDVIVFPTLSLLKWILLL*LLAGGL Trigger: CAAGCCTCCTGCCAACAAGCAGAGTAACAAGATCCA...TTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTATCATTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR GCA 90 bp | ATGATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATTTAATAAGGTCCATGATTaGCTTCTGGAGCCCCTCAAG | + |
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Preference number: 4 (lower is better) Translates to: MIQEDDVIVFPTLSLLKFNKVHD*LLEPLK Trigger: CTTGAGGGGCTCCAGAAGGCAATCATGGACCTTATT...AAATTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTATCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR CCA 90 bp | ATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATTTACAGTTGTCTGGCTTCTCTaGCAACGACCTGTAAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: IQEDDVIVFPTLSLLKFTVVWLL*QRPVRF Trigger: AAACCTTACAGGTCGTTGCCAGAGAAGCCAGACAAC...TGTAAATTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR CCA 90 bp | CATTCAGCTTATATAAATTGGTCCTCTGGTATGTCTGATGAAATTTACCTGTGGTGTTACTCTGCTTGTTaGCAGGAGGCTTGGGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: HSAYINWSSGMSDEIYLWCYSAC*QEAWVD Trigger: ATCAACCCAAGCCTCCTGCCAACAAGCAGAGTAACA...CCACAGGTAAATTTCATCAGACATACCAGAGGACCAATTTATATAAGCTGAATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR CCA 90 bp | CATTCAGCTTATATAAATTGGTCCTCTGGTATGTCTGATGAAATTTACCTGTGGGGATGTTTTCTGCACTaGATCTGTTTTCTGGCTAGA | + |
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Preference number: 4 (lower is better) Translates to: HSAYINWSSGMSDEIYLWGCFLH*ICFLAR Trigger: TCTAGCCAGAAAACAGATCCAGTGCAGAAAACATCC...CCACAGGTAAATTTCATCAGACATACCAGAGGACCAATTTATATAAGCTGAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR GCA 90 bp | ACAATGATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATCGCTCTCTCTATTTTaGCTAATGGATTCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TMIQEDDVIVFPTLSLLKSLSLF*LMDSSS Trigger: AGAAGAAGAATCCATTAGGCAAAATAGAGAGAGCGA...TTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTATCATTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR GCA 90 bp | ATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATTTACACGACCTGTAAGGTTTTaGTTTGATTTCACTTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: IQEDDVIVFPTLSLLKFTRPVRF*FDFTFR Trigger: TCTGAAAGTGAAATCAAAGCAAAACCTTACAGGTCG...TGTAAATTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR CCA 90 bp | ATGATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATTTACAGAATGTAAAACCTaGATCTTGTTACTCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: MIQEDDVIVFPTLSLLKFTECKT*ILLLCL Trigger: CAAGCAGAGTAACAAGATCCAGGTTTTACATTCTGT...AAATTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTATCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR GCA 90 bp | GATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATTTACATTCAGCTTATATAATCTTCTTTATCTTTaGCAGCACCGCATTAACACA | + |
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Preference number: 4 (lower is better) Translates to: DVIVFPTLSLLKFTFSLYNLLYL*QHRINT Trigger: TGTGTTAATGCGGTGCTGGCAAAGATAAAGAAGATT...ATATAAGCTGAATGTAAATTTAAGAAGGGACAGGGTAGGGAAAACTATGACATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS TCA 90 bp | AGCTTGGCCACTGACTTGGAGGAGCTGGATATGTGGTTTAACCCTTaGATGAGCGTCCCACGGTTGATCTTGGCTAAGGCGAGGGCCATT | + |
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Preference number: 5 (lower is better) Translates to: SLATDLEELDMWFNP*MSVPRLILAKARAI Trigger: AATGGCCCTCGCCTTAGCCAAGATCAACCGTGGGACGCTCATTCAAGGGTTAAACCACATATCCAGCTCCTCCAAGTCAGTGGCCAAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022081.3 ENSMUST00000225553.2 |
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| CDS TCA 90 bp | AAAGGTTGTCTGGCTTCTCTGGCAACGACCTGTAAGGTTTTGCTTTaGTTTCACTTTCAGAAAACATGGGCTTTCGGAGCGCGGGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: KGCLASLATTCKVLL*FHFQKTWAFGARAQ Trigger: CTGAGCCCGCGCTCCGAAAGCCCATGTTTTCTGAAAGTGAAATCAAAGCAAAACCTTACAGGTCGTTGCCAGAGAAGCCAGACAACCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR CAA 90 bp | CATTCAGCTTATATAAATTGGTCCTCTGGTATGTCTGATGAAATTTACCTGTGGCGCGGCTGCAGAAGCTaGGCCACTGACTTGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: HSAYINWSSGMSDEIYLWRGCRS*ATDLEE Trigger: CTCCTCCAAGTCAGTGGCCAAGCTTCTGCAGCCGCG...CCACAGGTAAATTTCATCAGACATACCAGAGGACCAATTTATATAAGCTGAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS CCA 90 bp | GGGAGATCATCTTTAAACTCATCAATAAGGTCCATGATTGCCTTCTaGAGCCCCTCAAGTCTTCCAGAGAAGTTCTTCACCACCTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: GRSSLNSSIRSMIAF*SPSSLPEKFFTTCP Trigger: TGGACAGGTGGTGAAGAACTTCTCTGGAAGACTTGAGGGGCTCCAGAAGGCAATCATGGACCTTATTGATGAGTTTAAAGATGATCTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022081.3 ENSMUST00000225553.2 |
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| CDS CCA 90 bp | AATGTAAAACCTGGATCTTGTTACTCTGCTTGTTGGCAGGAGGCTTaGGTTGATCTAAAAGGTTGTCTGGCTTCTCTGGCAACGACCTGT | + |
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Preference number: 5 (lower is better) Translates to: NVKPGSCYSACWQEA*VDLKGCLASLATTC Trigger: ACAGGTCGTTGCCAGAGAAGCCAGACAACCTTTTAGATCAACCCAAGCCTCCTGCCAACAAGCAGAGTAACAAGATCCAGGTTTTACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS GCA 90 bp | GATGGTAGGGAGATCATCTTTAAACTCATCAATAAGGTCCATGATTaGCTTCTGGAGCCCCTCAAGTCTTCCAGAGAAGTTCTTCACCAC | + |
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Preference number: 5 (lower is better) Translates to: DGREIIFKLINKVHD*LLEPLKSSREVLHH Trigger: GTGGTGAAGAACTTCTCTGGAAGACTTGAGGGGCTCCAGAAGGCAATCATGGACCTTATTGATGAGTTTAAAGATGATCTCCCTACCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022081.3 ENSMUST00000225553.2 |
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| CDS CCA 90 bp | GGTCAAACACAGAATGTAAAACCTGGATCTTGTTACTCTGCTTGTTaGCAGGAGGCTTGGGTTGATCTAAAAGGTTGTCTGGCTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: GQTQNVKPGSCYSAC*QEAWVDLKGCLASL Trigger: CAGAGAAGCCAGACAACCTTTTAGATCAACCCAAGCCTCCTGCCAACAAGCAGAGTAACAAGATCCAGGTTTTACATTCTGTGTTTGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS GCA 90 bp | TTGATCTTGGCTAAGGCGAGGGCCATTCTGACCTTGGATGTTTTCTaGACTGGATCTGTTTTCTGGCTAGACTGTGATAATCTTAAGATG | + |
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Preference number: 5 (lower is better) Translates to: LILAKARAILTLDVF*TGSVFWLDCDNLKM Trigger: CATCTTAAGATTATCACAGTCTAGCCAGAAAACAGATCCAGTGCAGAAAACATCCAAGGTCAGAATGGCCCTCGCCTTAGCCAAGATCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022081.3 ENSMUST00000225553.2 |
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| CDS-3UTR CAA 90 bp | ACAATGATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAAAGGGCCATTCTGACCTaGGATGTTTTCTGCACTGGA | + |
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Preference number: 5 (lower is better) Translates to: TMIQEDDVIVFPTLSLLKRAILT*DVFCTG Trigger: TCCAGTGCAGAAAACATCCAAGGTCAGAATGGCCCT...TTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTATCATTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR CAA 90 bp | CATTCAGCTTATATAAATTGGTCCTCTGGTATGTCTGATGAAATTTACCTGTGGATCTTGTTACTCTGCTaGTTGGCAGGAGGCTTGGGT | + |
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Preference number: 5 (lower is better) Translates to: HSAYINWSSGMSDEIYLWILLLC*LAGGLG Trigger: ACCCAAGCCTCCTGCCAACAAGCAGAGTAACAAGAT...CCACAGGTAAATTTCATCAGACATACCAGAGGACCAATTTATATAAGCTGAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR CAA 90 bp | ATGATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATTTCTCGCTCTCTCTATTTaGCCTAATGGATTCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: MIQEDDVIVFPTLSLLKFLALSI*PNGFFF Trigger: GAAGAAGAATCCATTAGGCAAAATAGAGAGAGCGAG...AAATTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTATCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS-3UTR CAA 90 bp | ATACAAGAGGATGATGTCATAGTTTTCCCTACCCTGTCCCTTCTTAAATTTACATGTAAAACCTGGATCTaGTTACTCTGCTTGTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: IQEDDVIVFPTLSLLKFTCKTWI*LLCLLA Trigger: TGCCAACAAGCAGAGTAACAAGATCCAGGTTTTACA...TGTAAATTTAAGAAGGGACAGGGTAGGGAAAACTATGACATCATCCTCTTGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS GCA 72 bp | CTCCTCAGTTCTAGGAGTCTGTATGCCAGCCGCGGCTaGAGAAGCTTGGCCACTGACTTGGAGGAGCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: LLSSRSLYASRG*RSLATDLEELD Trigger: ATCCAGCTCCTCCAAGTCAGTGGCCAAGCTTCTGCAGCCGCGGCTGGCATACAGACTCCTAGAACTGAGGAG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS CCA 72 bp | CTAGGAGTCTGTATGCCAGCCGCGGCTGCAGAAGCTTaGCCACTGACTTGGAGGAGCTGGATATGTGGTTTA | + |
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Preference number: 6 (lower is better) Translates to: LGVCMPAAAAEA*PLTWRSWICGL Trigger: TAAACCACATATCCAGCTCCTCCAAGTCAGTGGCCAAGCTTCTGCAGCCGCGGCTGGCATACAGACTCCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022081.3 ENSMUST00000225553.2 |
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| CDS GCA 72 bp | GCTAAGGCGAGGGCCATTCTGACCTTGGATGTTTTCTaGACTGGATCTGTTTTCTGGCTAGACTGTGATAAT | + |
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Preference number: 6 (lower is better) Translates to: AKARAILTLDVF*TGSVFWLDCDN Trigger: ATTATCACAGTCTAGCCAGAAAACAGATCCAGTGCAGAAAACATCCAAGGTCAGAATGGCCCTCGCCTTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022081.3 ENSMUST00000225553.2 |
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| CDS CCA 72 bp | TCTTTAAACTCATCAATAAGGTCCATGATTGCCTTCTaGAGCCCCTCAAGTCTTCCAGAGAAGTTCTTCACC | + |
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Preference number: 6 (lower is better) Translates to: SLNSSIRSMIAF*SPSSLPEKFFT Trigger: GGTGAAGAACTTCTCTGGAAGACTTGAGGGGCTCCAGAAGGCAATCATGGACCTTATTGATGAGTTTAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022081.3 ENSMUST00000225553.2 |
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| CDS CCA 72 bp | CAGAATGTAAAACCTGGATCTTGTTACTCTGCTTGTTaGCAGGAGGCTTGGGTTGATCTAAAAGGTTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: QNVKPGSCYSAC*QEAWVDLKGCL Trigger: CAGACAACCTTTTAGATCAACCCAAGCCTCCTGCCAACAAGCAGAGTAACAAGATCCAGGTTTTACATTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022081.3 |
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| CDS GCA 72 bp | GAGATCATCTTTAAACTCATCAATAAGGTCCATGATTaGCTTCTGGAGCCCCTCAAGTCTTCCAGAGAAGTT | + |
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Preference number: 6 (lower is better) Translates to: EIIFKLINKVHD*LLEPLKSSREV Trigger: AACTTCTCTGGAAGACTTGAGGGGCTCCAGAAGGCAATCATGGACCTTATTGATGAGTTTAAAGATGATCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022081.3 ENSMUST00000225553.2 |
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