Pregenerated sensors for SPATA48 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020191Ensembl transcript IDs: ENSMUST00000020410.11, ENSMUST00000109678.3
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCAAGGACTCATAAATCCTaGGCAGGGGTCACCCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSRTHKS*AGVTQG Trigger: CCCTTGGGTGACCCCTGCTCAGGATTTATGAGTCCT...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATGCCCTCCCATATGGTaGGGGATAGGGGTAGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSCPPIW*GIGVVK Trigger: CTTCACTACCCCTATCCCCCACCATATGGGAGGGCA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR TCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATTGGGTGGGTGGCTGTaGAATGAACCTTGCCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSLGGWL*NEPCQC Trigger: ACACTGGCAAGGTTCATTTCACAGCCACCCACCCAA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS-3UTR TCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATCCCAGGCATGGTCTTaGCCTCCATATCCATGTACT | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSSQAWS*PPYPCT Trigger: AGTACATGGATATGGAGGTCAAGACCATGCCTGGGA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR TCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATGGGTGGCTGTGAAATaGACCTTGCCAGTGTATCCT | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSWVAVK*TLPVYP Trigger: AGGATACACTGGCAAGGTTCATTTCACAGCCACCCA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS-3UTR TCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATTGGACTCACAAAATTaGTTGGTTTGGCTGGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSLDSQN*LVWLAL Trigger: CAGCGCCAGCCAAACCAATCAATTTTGTGAGTCCAA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS-3UTR TCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATCTGTGCTCTGCACATaGCCAGTATACAGAGGAATG | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSSVLCT*PVYRGM Trigger: CATTCCTCTGTATACTGGTCATGTGCAGAGCACAGA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS-3UTR GCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCACATTGTCAGCGTCTGTaGTCTGCACATGACCAGTAT | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSHCQRL*SAHDQY Trigger: ATACTGGTCATGTGCAGAGCACAGACGCTGACAATG...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCAAGGAACAACCTTCATTaGGCTTGTCCAACCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSRNNLH*ACPTSK Trigger: CTTGGAGGTTGGACAAGCCCAATGAAGGTTGTTCCT...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCAAAACACTGTGAGATGTaGTCGGCAGCTTTTTCCACG | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSKHCEM*SAAFST Trigger: CGTGGAAAAAGCTGCCGACCACATCTCACAGTGTTT...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATGTCTGGCACTTTCCTaGAATTCCATCTCCTATCCT | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSCLALS*NSISYP Trigger: AGGATAGGAGATGGAATTCCAGGAAAGTGCCAGACA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCACCTACTTCATGTTCATaGACTGGTACAGGAACAACC | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSPTSCS*TGTGTT Trigger: GGTTGTTCCTGTACCAGTCCATGAACATGAAGTAGG...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCACTTGATGGAAATGTCTaGCACTTTCCTGGAATTCCA | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSLDGNV*HFPGIP Trigger: TGGAATTCCAGGAAAGTGCCAGACATTTCCATCAAG...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR TCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCACTTGAGTTTGTATACTaGAGTTTAGAGTGCCTAGGA | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSLEFVY*SLECLG Trigger: TCCTAGGCACTCTAAACTTCAGTATACAAACTCAAG...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS-3UTR GCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCACGTCAAAGGTATATATaGGACTTAGTGTGCCTACTT | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSRQRYI*DLVCLL Trigger: AAGTAGGCACACTAAGTCGCATATATACCTTTGACG...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATTCATGTTCATGGACTaGTACAGGAACAACCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSFMFMD*YRNNLH Trigger: ATGAAGGTTGTTCCTGTACCAGTCCATGAACATGAA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATTGAAATCCTTTGTCTaGTCTAGGAACTCGATTTTG | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSLKSFV*SRNSIL Trigger: CAAAATCGAGTTCCTAGACCAGACAAAGGATTTCAA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATATTTCTTGTCTAGCTaGACAAGTGGTTCACTATCA | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSYFLSS*TSGSLS Trigger: TGATAGTGAACCACTTGTCCAGCTAGACAAGAAATA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCAAATATTAGAATTTGTTaGGTGGGTGGCTGTGAAATG | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSNIRIC*VGGCEM Trigger: CATTTCACAGCCACCCACCCAACAAATTCTAATATT...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS-3UTR CCA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATTTACTCCTAGTACTTaGACTCACAAAATTGATTGG | + |
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Preference number: 4 (lower is better) Translates to: FLHHCVQSHPLAELRSFSFTPST*THKIDW Trigger: CCAATCAATTTTGTGAGTCCAAGTACTAGGAGTAAA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS-3UTR CAA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATCACCATTTGGGACATaGGGCCCTGGTGACGGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: FLHHCVQSHPLAELRSFSSPFGT*GPGDGS Trigger: GCTTCCGTCACCAGGGCCCAATGTCCCAAATGGTGA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS TCA 90 bp | CAGGAACAACCTTCATTGGGCTTGTCCAACCTCCAAGCTTTGCCTTaGTGGAAATGTCTGGCACTTTCCTGGAATTCCATCTCCTATCCT | + |
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Preference number: 5 (lower is better) Translates to: QEQPSLGLSNLQALP*WKCLALSWNSISYP Trigger: AGGATAGGAGATGGAATTCCAGGAAAGTGCCAGACATTTCCATCAAGGCAAAGCTTGGAGGTTGGACAAGCCCAATGAAGGTTGTTCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS TCA 90 bp | GAAATGAACCTTGCCAGTGTATCCTGGGATATTCGCAGACCGGCTTaGGTTTGTATACTGAAGTTTAGAGTGCCTAGGACTGGCCACAGA | + |
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Preference number: 5 (lower is better) Translates to: EMNLASVSWDIRRPA*VCILKFRVPRTGHR Trigger: TCTGTGGCCAGTCCTAGGCACTCTAAACTTCAGTATACAAACTCAAGCCGGTCTGCGAATATCCCAGGATACACTGGCAAGGTTCATTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS GCA 90 bp | TGGTACAGGAACAACCTTCATTGGGCTTGTCCAACCTCCAAGCTTTaGCTTGATGGAAATGTCTGGCACTTTCCTGGAATTCCATCTCCT | + |
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Preference number: 5 (lower is better) Translates to: WYRNNLHWACPTSKL*LDGNVWHFPGIPSP Trigger: AGGAGATGGAATTCCAGGAAAGTGCCAGACATTTCCATCAAGGCAAAGCTTGGAGGTTGGACAAGCCCAATGAAGGTTGTTCCTGTACCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CAA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCACCTCCAAGCTTTGCCTaGATGGAAATGTCTGGCACT | + |
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Preference number: 5 (lower is better) Translates to: FLHHCVQSHPLAELRSFSPPSFA*MEMSGT Trigger: AGTGCCAGACATTTCCATCAAGGCAAAGCTTGGAGG...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CAA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCACAGGAACAACCTTCATaGGGCTTGTCCAACCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: FLHHCVQSHPLAELRSFSQEQPS*GLSNLQ Trigger: TTGGAGGTTGGACAAGCCCAATGAAGGTTGTTCCTG...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CAA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCACTTCTGGGTCAAGTTTaGGTGGTAGCATCTTGTCCC | + |
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Preference number: 5 (lower is better) Translates to: FLHHCVQSHPLAELRSFSLLGQV*VVASCP Trigger: GGGACAAGATGCTACCACCAAAACTTGACCCAGAAG...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS TCA 90 bp | ACTCCTAGTACTTGGACTCACAAAATTGATTGGTTTGGCTGGCGCTaGGAACAATCTTGTCTGAAATCTGTCCCAAAGTCCTCCGACCAT | + |
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Preference number: 5 (lower is better) Translates to: TPSTWTHKIDWFGWR*EQSCLKSVPKSSDH Trigger: ATGGTCGGAGGACTTTGGGACAGATTTCAGACAAGATTGTTCTCAGCGCCAGCCAAACCAATCAATTTTGTGAGTCCAAGTACTAGGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS CCA 90 bp | TCGTCAAAGGTATATATGCGACTTAGTGTGCCTACTTCATGTTCATaGACTGGTACAGGAACAACCTTCATTGGGCTTGTCCAACCTCCA | + |
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Preference number: 5 (lower is better) Translates to: SSKVYMRLSVPTSCS*TGTGTTFIGLVQPP Trigger: TGGAGGTTGGACAAGCCCAATGAAGGTTGTTCCTGTACCAGTCCATGAACATGAAGTAGGCACACTAAGTCGCATATATACCTTTGACGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CAA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCAGGAAACTCACCAGGTTaGGTATGGCTCTGCCTATAT | + |
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Preference number: 5 (lower is better) Translates to: FLHHCVQSHPLAELRSFSGNSPG*VWLCLY Trigger: ATATAGGCAGAGCCATACCAAACCTGGTGAGTTTCC...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CAA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATGTAGGGCTTCACAGTaGTCACCATTTGGGACATTG | + |
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Preference number: 5 (lower is better) Translates to: FLHHCVQSHPLAELRSFSCRASQ*SPFGTL Trigger: CAATGTCCCAAATGGTGACAACTGTGAAGCCCTACA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS-3UTR CAA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATTTGGTGGTAGCATCTaGTCCCAAGGAACATCTTCA | + |
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Preference number: 5 (lower is better) Translates to: FLHHCVQSHPLAELRSFSFGGSI*SQGTSS Trigger: TGAAGATGTTCCTTGGGACAAGATGCTACCACCAAA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS-3UTR CAA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCAGCGCTGAGAACAATCTaGTCTGAAATCTGTCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: FLHHCVQSHPLAELRSFSALRTI*SEICPK Trigger: TTTGGGACAGATTTCAGACAAGATTGTTCTCAGCGC...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS-3UTR CAA 90 bp | TTTCTTCATCACTGTGTACAAAGCCATCCCCTGGCTGAACTGAGAAGTTTCTCATCTAGGAACTCGATTTaGAGGTTTCACATCATGGAA | + |
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Preference number: 5 (lower is better) Translates to: FLHHCVQSHPLAELRSFSSRNSI*RFHIME Trigger: TTCCATGATGTGAAACCTCAAAATCGAGTTCCTAGA...TGAGAAACTTCTCAGTTCAGCCAGGGGATGGCTTTGTACACAGTGATGAAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS CCA 72 bp | GTTGTAGGGCTTCACAGTTGTCACCATTTGGGACATTaGGCCCTGGTGACGGAAGCGGTCGACTCTCATTTC | + |
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Preference number: 6 (lower is better) Translates to: VVGLHSCHHLGH*ALVTEAVDSHF Trigger: GAAATGAGAGTCGACCGCTTCCGTCACCAGGGCCCAATGTCCCAAATGGTGACAACTGTGAAGCCCTACAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS CAA 72 bp | GGTTGTAGGGCTTCACAGTTGTCACCATTTGGGACATaGGGCCCTGGTGACGGAAGCGGTCGACTCTCATTT | + |
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Preference number: 6 (lower is better) Translates to: GCRASQLSPFGT*GPGDGSGRLSF Trigger: AAATGAGAGTCGACCGCTTCCGTCACCAGGGCCCAATGTCCCAAATGGTGACAACTGTGAAGCCCTACAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS CAA 90 bp | TTCCTTCTTGTTAAAAGGGTTGTAGGGCTTCACAGTTGTCACCATTaGGGACATTGGGCCCTGGTGACGGAAGCGGTCGACTCTCATTTC | + |
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Preference number: 6 (lower is better) Translates to: FLLVKRVVGLHSCHH*GHWALVTEAVDSHF Trigger: GAAATGAGAGTCGACCGCTTCCGTCACCAGGGCCCAATGTCCCAAATGGTGACAACTGTGAAGCCCTACAACCCTTTTAACAAGAAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS TCA 72 bp | CCTGGGATATTCGCAGACCGGCTTGAGTTTGTATACTaGAGTTTAGAGTGCCTAGGACTGGCCACAGACTTG | + |
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Preference number: 6 (lower is better) Translates to: PGIFADRLEFVY*SLECLGLATDL Trigger: CAAGTCTGTGGCCAGTCCTAGGCACTCTAAACTTCAGTATACAAACTCAAGCCGGTCTGCGAATATCCCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS CCA 72 bp | TTCATGTTCATGGACTGGTACAGGAACAACCTTCATTaGGCTTGTCCAACCTCCAAGCTTTGCCTTGATGGA | + |
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Preference number: 6 (lower is better) Translates to: FMFMDWYRNNLH*ACPTSKLCLDG Trigger: TCCATCAAGGCAAAGCTTGGAGGTTGGACAAGCCCAATGAAGGTTGTTCCTGTACCAGTCCATGAACATGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS CAA 90 bp | TGTGGTCGGCAGCTTTTTCCACGGTTGTTTCTTCTGGGTCAAGTTTaGGTGGTAGCATCTTGTCCCAAGGAACATCTTCATAAGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: CGRQLFPRLFLLGQV*VVASCPKEHLHKLS Trigger: AGAAAGCTTATGAAGATGTTCCTTGGGACAAGATGCTACCACCAAAACTTGACCCAGAAGAAACAACCGTGGAAAAAGCTGCCGACCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS GCA 72 bp | TATCTCCGTAGGGATTGTCCACATTGTCAGCGTCTGTaGTCTGCACATGACCAGTATACAGAGGAATGTATT | + |
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Preference number: 6 (lower is better) Translates to: YLRRDCPHCQRL*SAHDQYTEECI Trigger: AATACATTCCTCTGTATACTGGTCATGTGCAGAGCACAGACGCTGACAATGTGGACAATCCCTACGGAGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS CCA 72 bp | TGTCCAACCTCCAAGCTTTGCCTTGATGGAAATGTCTaGCACTTTCCTGGAATTCCATCTCCTATCCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: CPTSKLCLDGNV*HFPGIPSPILF Trigger: AAACAGGATAGGAGATGGAATTCCAGGAAAGTGCCAGACATTTCCATCAAGGCAAAGCTTGGAGGTTGGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS TCA 72 bp | ACTTGGACTCACAAAATTGATTGGTTTGGCTGGCGCTaGGAACAATCTTGTCTGAAATCTGTCCCAAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: TWTHKIDWFGWR*EQSCLKSVPKS Trigger: GGACTTTGGGACAGATTTCAGACAAGATTGTTCTCAGCGCCAGCCAAACCAATCAATTTTGTGAGTCCAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020410.11 ENSMUST00000109678.3 |
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| CDS CAA 72 bp | CAGCTTTTTCCACGGTTGTTTCTTCTGGGTCAAGTTTaGGTGGTAGCATCTTGTCCCAAGGAACATCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: QLFPRLFLLGQV*VVASCPKEHLH Trigger: ATGAAGATGTTCCTTGGGACAAGATGCTACCACCAAAACTTGACCCAGAAGAAACAACCGTGGAAAAAGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS GCA 72 bp | CATCTGTACTTATTGCCTCCTCGTCAAAGGTATATATaGGACTTAGTGTGCCTACTTCATGTTCATGGACTG | + |
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Preference number: 6 (lower is better) Translates to: HLYLLPPRQRYI*DLVCLLHVHGL Trigger: CAGTCCATGAACATGAAGTAGGCACACTAAGTCGCATATATACCTTTGACGAGGAGGCAATAAGTACAGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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| CDS CAA 90 bp | TTTTATTGTTGTTTGAAATCCTTTGTCTGGTCTAGGAACTCGATTTaGAGGTTTCACATCATGGAAACTCACCAGGTTTGGTATGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: FYCCLKSFVWSRNSI*RFHIMETHQVWYGS Trigger: AGAGCCATACCAAACCTGGTGAGTTTCCATGATGTGAAACCTCAAAATCGAGTTCCTAGACCAGACAAAGGATTTCAAACAACAATAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020410.11 |
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