Pregenerated sensors for SPATA46 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042800Ensembl transcript IDs: ENSMUST00000056991.6
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATCCTGTCCGGGCCTTCTaGTCCTTGCCCCAGAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYPVRAF*SLPQRV Trigger: AACCCTCTGGGGCAAGGAGCAGAAGGCCCGGACAGG...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATAGCTGCTCCCCATTCTaGGTGTCCCCCAAGTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYSCSPF*VSPKSG Trigger: GCCAGACTTGGGGGACACCCAGAATGGGGAGCAGCT...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR GCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATCAGTTCCGTCTCAGCTaGTCCCCATTCTGGGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYQFRLS*SPFWVS Trigger: GGACACCCAGAATGGGGAGCAGCTGAGACGGAACTG...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR GCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATAGGGCCGGTAGATGGTaGAGTTCCGTCTCAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYRAGRW*SSVSAA Trigger: AGCAGCTGAGACGGAACTGCACCATCTACCGGCCCT...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR GCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATGGCAGTTATCCCCTCTaGCCTCTTCTCGGTCCACCT | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYGSYPL*PLLGPP Trigger: AGGTGGACCGAGAAGAGGGCAGAGGGGATAACTGCC...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATACCAGGGCCGGTAGATaGTGCAGTTCCGTCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYTRAGR*CSSVSA Trigger: AGCTGAGACGGAACTGCACCATCTACCGGCCCTGGT...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATTTCTCGGTCCACCTCTaGGAACCCATAGGCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYFSVHL*EPIGLQ Trigger: CTGGAGGCCTATGGGTTCCCAGAGGTGGACCGAGAA...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATGCCATTCTGCTGGGCTaGGTGCCACTTGGAAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYAILLG*VPLGSH Trigger: ATGGCTTCCAAGTGGCACCCAGCCCAGCAGAATGGC...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR GCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATTGGCTCTTGAGGGAGTaGAGAGTGGGGTACATGCGA | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYWLLRE*RVGYMR Trigger: TCGCATGTACCCCACTCTGCACTCCCTCAAGAGCCA...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR TCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATTGCCCCAGAGGGTTTTaGGCTTTCGGTAGTACACCT | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYCPRGF*AFGSTP Trigger: AGGTGTACTACCGAAAGCTCAAAACCCTCTGGGGCA...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR GCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATTTCTGCTGGGCTGGGTaGCACTTGGAAGCCATTAAG | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYFCWAG*HLEAIK Trigger: CTTAATGGCTTCCAAGTGGCACCCAGCCCAGCAGAA...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATGCTTGGATTTCCTGTTaGCCTCCCTGGGGTATGTGT | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYAWISC*PPWGMC Trigger: ACACATACCCCAGGGAGGCCAACAGGAAATCCAAGC...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATGGGCTGGGTGCCACTTaGAAGCCATTAAGATGTCCT | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYGLGAT*KPLRCP Trigger: AGGACATCTTAATGGCTTCCAAGTGGCACCCAGCCC...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR TCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATTTGGGAGGAAGAAGATaGGCAGACACTTTCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYLGGRR*ADTFSH Trigger: GTGGCTGAAAGTGTCTGCTCATCTTCTTCCTCCCAA...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR GCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATCATGCGACAACAGGATaGACACTTGTAGCCATTCTG | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYHATTG*TLVAIL Trigger: CAGAATGGCTACAAGTGTGCATCCTGTTGTCGCATG...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATGGGTATGTGTTCTCTTaGGAGGAAGAAGATGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYGYVFS*EEEDEQ Trigger: CTGCTCATCTTCTTCCTCCCAAGAGAACACATACCC...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATAATCCAAACCATGCTTaGATTTCCTGTTGGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYNPNHA*ISCWPP Trigger: GGGAGGCCAACAGGAAATCCAAGCATGGTTTGGATT...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR GCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATGGCTCTCTTTGTCTGTaGATACGAAGTAGCTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYGSLCL*IRSSCK Trigger: CTTACAGCTACTTCGTATGCACAGACAAAGAGAGCC...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR GCA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATATAGAATCCAAACCATaGTTGGATTTCCTGTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LISIYCYPSRGINRLHPYIESKP*LDFLLA Trigger: GGCCAACAGGAAATCCAAGCATGGTTTGGATTCTAT...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS GCA 90 bp | AGCAGACACTTTCAGCCACGTCCTCAAGAAGGCAGTTATCCCCTCTaGCCTCTTCTCGGTCCACCTCTGGGAACCCATAGGCCTCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: SRHFQPRPQEGSYPL*PLLGPPLGTHRPPG Trigger: ACCTGGAGGCCTATGGGTTCCCAGAGGTGGACCGAGAAGAGGGCAGAGGGGATAACTGCCTTCTTGAGGACGTGGCTGAAAGTGTCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS GCA 90 bp | GTGGCTCTTGAGGGAGTGCAGAGTGGGGTACATGCGACAACAGGATaGACACTTGTAGCCATTCTGCTGGGCTGGGTGCCACTTGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: VALEGVQSGVHATTG*TLVAILLGWVPLGS Trigger: GCTTCCAAGTGGCACCCAGCCCAGCAGAATGGCTACAAGTGTGCATCCTGTTGTCGCATGTACCCCACTCTGCACTCCCTCAAGAGCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS GCA 90 bp | CCACCTCTGGGAACCCATAGGCCTCCAGGTGGCTCTCTTTGTCTGTaGATACGAAGTAGCTGTAAGGGGAAAACCAGGGCCGGTAGATGG | + |
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Preference number: 5 (lower is better) Translates to: PPLGTHRPPGGSLCL*IRSSCKGKTRAGRW Trigger: CCATCTACCGGCCCTGGTTTTCCCCTTACAGCTACTTCGTATGCACAGACAAAGAGAGCCACCTGGAGGCCTATGGGTTCCCAGAGGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS CCA 90 bp | CTCAAGAAGGCAGTTATCCCCTCTGCCCTCTTCTCGGTCCACCTCTaGGAACCCATAGGCCTCCAGGTGGCTCTCTTTGTCTGTGCATAC | + |
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Preference number: 5 (lower is better) Translates to: LKKAVIPSALFSVHL*EPIGLQVALFVCAY Trigger: GTATGCACAGACAAAGAGAGCCACCTGGAGGCCTATGGGTTCCCAGAGGTGGACCGAGAAGAGGGCAGAGGGGATAACTGCCTTCTTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS CCA 90 bp | CCATTCTGCTGGGCTGGGTGCCACTTGGAAGCCATTAAGATGTCCTaGGATGTGATAGAATCCAAACCATGCTTGGATTTCCTGTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: PFCWAGCHLEAIKMS*DVIESKPCLDFLLA Trigger: GGCCAACAGGAAATCCAAGCATGGTTTGGATTCTATCACATCCCAGGACATCTTAATGGCTTCCAAGTGGCACCCAGCCCAGCAGAATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS GCA 90 bp | TTGGAAGCCATTAAGATGTCCTGGGATGTGATAGAATCCAAACCATaGTTGGATTTCCTGTTGGCCTCCCTGGGGTATGTGTTCTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: LEAIKMSWDVIESKP*LDFLLASLGYVFSW Trigger: CCAAGAGAACACATACCCCAGGGAGGCCAACAGGAAATCCAAGCATGGTTTGGATTCTATCACATCCCAGGACATCTTAATGGCTTCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CAA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATCCCTTGATGTGGCTCTaGAGGGAGTGCAGAGTGGGG | + |
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Preference number: 5 (lower is better) Translates to: LISIYCYPSRGINRLHPYPLMWL*RECRVG Trigger: CCCCACTCTGCACTCCCTCAAGAGCCACATCAAGGG...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CAA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATTGGGCTGGGTGCCACTaGGAAGCCATTAAGATGTCC | + |
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Preference number: 5 (lower is better) Translates to: LISIYCYPSRGINRLHPYWAGCH*EAIKMS Trigger: GGACATCTTAATGGCTTCCAAGTGGCACCCAGCCCA...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS-3UTR CAA 90 bp | CTAATTTCAATTTATTGTTACCCCTCTAGAGGCATAAATAGGCTTCATCCCTATGAATCCAAACCATGCTaGGATTTCCTGTTGGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LISIYCYPSRGINRLHPYESKPC*DFLLAS Trigger: GGAGGCCAACAGGAAATCCAAGCATGGTTTGGATTC...ATAGGGATGAAGCCTATTTATGCCTCTAGAGGGGTAACAATAAATTGAAATTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS CCA 72 bp | GCAGTTATCCCCTCTGCCCTCTTCTCGGTCCACCTCTaGGAACCCATAGGCCTCCAGGTGGCTCTCTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: AVIPSALFSVHL*EPIGLQVALFV Trigger: GACAAAGAGAGCCACCTGGAGGCCTATGGGTTCCCAGAGGTGGACCGAGAAGAGGGCAGAGGGGATAACTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS GCA 72 bp | GAGGGAGTGCAGAGTGGGGTACATGCGACAACAGGATaGACACTTGTAGCCATTCTGCTGGGCTGGGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: EGVQSGVHATTG*TLVAILLGWVP Trigger: TGGCACCCAGCCCAGCAGAATGGCTACAAGTGTGCATCCTGTTGTCGCATGTACCCCACTCTGCACTCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS TCA 72 bp | CTGGGTGTCCCCCAAGTCTGGCAAGCTGGTGGCAAGTaGGGACATTATGTCCGGAAAAGCACTCAGGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: LGVPQVWQAGGK*GHYVRKSTQGR Trigger: TCTGCCCTGAGTGCTTTTCCGGACATAATGTCCTCACTTGCCACCAGCTTGCCAGACTTGGGGGACACCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS GCA 72 bp | TTTCAGCCACGTCCTCAAGAAGGCAGTTATCCCCTCTaGCCTCTTCTCGGTCCACCTCTGGGAACCCATAGG | + |
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Preference number: 6 (lower is better) Translates to: FQPRPQEGSYPL*PLLGPPLGTHR Trigger: CCTATGGGTTCCCAGAGGTGGACCGAGAAGAGGGCAGAGGGGATAACTGCCTTCTTGAGGACGTGGCTGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS GCA 72 bp | GGAACCCATAGGCCTCCAGGTGGCTCTCTTTGTCTGTaGATACGAAGTAGCTGTAAGGGGAAAACCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: GTHRPPGGSLCL*IRSSCKGKTRA Trigger: GGCCCTGGTTTTCCCCTTACAGCTACTTCGTATGCACAGACAAAGAGAGCCACCTGGAGGCCTATGGGTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS CCA 72 bp | GATTTCCTGTTGGCCTCCCTGGGGTATGTGTTCTCTTaGGAGGAAGAAGATGAGCAGACACTTTCAGCCACG | + |
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Preference number: 6 (lower is better) Translates to: DFLLASLGYVFS*EEEDEQTLSAT Trigger: CGTGGCTGAAAGTGTCTGCTCATCTTCTTCCTCCCAAGAGAACACATACCCCAGGGAGGCCAACAGGAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS CCA 72 bp | AATCCAAACCATGCTTGGATTTCCTGTTGGCCTCCCTaGGGTATGTGTTCTCTTGGGAGGAAGAAGATGAGC | + |
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Preference number: 6 (lower is better) Translates to: NPNHAWISCWPP*GMCSLGRKKMS Trigger: GCTCATCTTCTTCCTCCCAAGAGAACACATACCCCAGGGAGGCCAACAGGAAATCCAAGCATGGTTTGGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS CAA 90 bp | ATGTCCTGGGATGTGATAGAATCCAAACCATGCTTGGATTTCCTGTaGGCCTCCCTGGGGTATGTGTTCTCTTGGGAGGAAGAAGATGAG | + |
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Preference number: 6 (lower is better) Translates to: MSWDVIESKPCLDFL*ASLGYVFSWEEEDE Trigger: CTCATCTTCTTCCTCCCAAGAGAACACATACCCCAGGGAGGCCAACAGGAAATCCAAGCATGGTTTGGATTCTATCACATCCCAGGACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS CAA 90 bp | GAAGCCATTAAGATGTCCTGGGATGTGATAGAATCCAAACCATGCTaGGATTTCCTGTTGGCCTCCCTGGGGTATGTGTTCTCTTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: EAIKMSWDVIESKPC*DFLLASLGYVFSWE Trigger: CTCCCAAGAGAACACATACCCCAGGGAGGCCAACAGGAAATCCAAGCATGGTTTGGATTCTATCACATCCCAGGACATCTTAATGGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS CCA 72 bp | TGGGCTGGGTGCCACTTGGAAGCCATTAAGATGTCCTaGGATGTGATAGAATCCAAACCATGCTTGGATTTC | + |
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Preference number: 6 (lower is better) Translates to: WAGCHLEAIKMS*DVIESKPCLDF Trigger: GAAATCCAAGCATGGTTTGGATTCTATCACATCCCAGGACATCTTAATGGCTTCCAAGTGGCACCCAGCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS CAA 72 bp | AAGATGTCCTGGGATGTGATAGAATCCAAACCATGCTaGGATTTCCTGTTGGCCTCCCTGGGGTATGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: KMSWDVIESKPC*DFLLASLGYVF Trigger: GAACACATACCCCAGGGAGGCCAACAGGAAATCCAAGCATGGTTTGGATTCTATCACATCCCAGGACATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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| CDS GCA 72 bp | ATTAAGATGTCCTGGGATGTGATAGAATCCAAACCATaGTTGGATTTCCTGTTGGCCTCCCTGGGGTATGTG | + |
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Preference number: 6 (lower is better) Translates to: IKMSWDVIESKP*LDFLLASLGYV Trigger: CACATACCCCAGGGAGGCCAACAGGAAATCCAAGCATGGTTTGGATTCTATCACATCCCAGGACATCTTAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056991.6 |
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