Pregenerated sensors for SPATA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031518Ensembl transcript IDs: ENSMUST00000033917.7
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR TCA 90 bp | ACATTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCCTCCCACAGTTGGCTTaGCATCAAACCACCCTGGAT | + |
Preference number: 4 (lower is better) Translates to: TLVISLLLSYFLHVLHCLLPQLA*HQTTLD Trigger: ATCCAGGGTGGTTTGATGTCAAGCCAACTGTGGGAG...GAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR GCA 90 bp | GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTCTTTGGCTTCTTTCCTaGGGGAACTGCTGGTGGTGT | + |
Preference number: 4 (lower is better) Translates to: DWGETLYTQTVVDISDITLWLLS*GNCWWC Trigger: ACACCACCAGCAGTTCCCGCAGGAAAGAAGCCAAAG...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CCA 90 bp | GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTGATTTCTCCCACAGTTaGCTTGACATCAAACCACCC | + |
Preference number: 4 (lower is better) Translates to: DWGETLYTQTVVDISDITDFSHS*LDIKPP Trigger: GGGTGGTTTGATGTCAAGCCAACTGTGGGAGAAATC...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR TCA 90 bp | GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTACCCCAGCCTTACAGTaGATTGTTCCATGGATTAGT | + |
Preference number: 4 (lower is better) Translates to: DWGETLYTQTVVDISDITTPALQ*IVPWIS Trigger: ACTAATCCATGGAACAATTCACTGTAAGGCTGGGGT...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR GCA 90 bp | TTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCTTCCTCTTGACTTGTATCTaGGCTTATAGCTATGGGCAG | + |
Preference number: 4 (lower is better) Translates to: LVISLLLSYFLHVLHCLFLLTCI*AYSYGQ Trigger: CTGCCCATAGCTATAAGCGCAGATACAAGTCAAGAG...GAAGAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR TCA 90 bp | GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTCCCAGTTATCCAACTTaGCTTTTAAGGAGGTTCCAT | + |
Preference number: 4 (lower is better) Translates to: DWGETLYTQTVVDISDITPSYPT*LLRRFH Trigger: ATGGAACCTCCTTAAAAGTCAAGTTGGATAACTGGG...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR GCA 90 bp | ACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATTTCTTTCCGTGCATTaGCATCATTGTCTGATTTTG | + |
Preference number: 4 (lower is better) Translates to: TQTVVDISDITSSKLLPPFLSVH*HHCLIL Trigger: CAAAATCAGACAATGATGGCAATGCACGGAAAGAAA...TGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR GCA 90 bp | GAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGAAACTTCTCTATCTGTaGCCAGTTATCCAACTTGAC | + |
Preference number: 4 (lower is better) Translates to: ETLYTQTVVDISDITSSKKLLYL*PVIQLD Trigger: GTCAAGTTGGATAACTGGGCACAGATAGAGAAGTTT...CTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR GCA 90 bp | GAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCAAGGATTTCCACTTTaGTTCACATGGATTTCTTTC | + |
Preference number: 4 (lower is better) Translates to: ETLYTQTVVDISDITSSKQGFPL*FTWISF Trigger: GAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTG...CTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR GCA 90 bp | GAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCTGGATTCAGTTTTCTaGTTAATTTTCTTTGCAGCA | + |
Preference number: 4 (lower is better) Translates to: ETLYTQTVVDISDITSSKLDSVF*LIFFAA Trigger: TGCTGCAAAGAAAATTAAGCAGAAAACTGAATCCAG...CTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CCA 90 bp | AAATCCCTGGTGACATTCCTAGGGAAGAAGCTGAGATCTAGGCCCTaGAGCCAGCGCAGGACAGAACGACTCAGGCGGGAGCTCCTAGGC | + |
Preference number: 5 (lower is better) Translates to: KSLVTFLGKKLRSRP*SQRRTERLRRELLG Trigger: GCCTAGGAGCTCCCGCCTGAGTCGTTCTGTCCTGCGCTGGCTCCAGGGCCTAGATCTCAGCTTCTTCCCTAGGAATGTCACCAGGGATTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | ACATTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCTCTCCCACAGTTGGCTaGACATCAAACCACCCTGGA | + |
Preference number: 5 (lower is better) Translates to: TLVISLLLSYFLHVLHCLSPTVG*TSNHPG Trigger: TCCAGGGTGGTTTGATGTCAAGCCAACTGTGGGAGA...GAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTACACCAGACATTTCTTaGGCTTCTTTCCTGCGGGAA | + |
Preference number: 5 (lower is better) Translates to: DWGETLYTQTVVDISDITTPDIS*ASFLRE Trigger: TTCCCGCAGGAAAGAAGCCAAAGAAATGTCTGGTGT...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | TTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCTTCGCCCAGTTATCCAACTaGACTTTTAAGGAGGTTCCA | + |
Preference number: 5 (lower is better) Translates to: LVISLLLSYFLHVLHCLFAQLSN*TFKEVP Trigger: TGGAACCTCCTTAAAAGTCAAGTTGGATAACTGGGC...GAAGAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | ATCCAAGACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATGTGCAGCTTTCTCCTTaGAACCTCTTGACTTGTATC | + |
Preference number: 5 (lower is better) Translates to: IQDWGETLYTQTVVDISDVQLSP*NLLTCI Trigger: GATACAAGTCAAGAGGTTCAAAGGAGAAAGCTGCAC...ATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTCTTGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS GCA 90 bp | CACAAGGATTTCCACTTTGCTTCACATGGATTTCTTTCCGTGCATTaGCATCATTGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCCT | + |
Preference number: 5 (lower is better) Translates to: HKDFHFASHGFLSVH*HHCLILIKVVQLSP Trigger: AGGAGAAAGCTGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | TTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCTTCCTGAGTACATTAGGATaGCTTAGTAGTTCCGACAAC | + |
Preference number: 5 (lower is better) Translates to: LVISLLLSYFLHVLHCLFLSTLG*LSSSDN Trigger: GTTGTCGGAACTACTAAGCAATCCTAATGTACTCAG...GAAGAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAA 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | TTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCTTCTCTCCTTTGAACCTCTaGACTTGTATCTGCGCTTAT | + |
Preference number: 5 (lower is better) Translates to: LVISLLLSYFLHVLHCLFSPLNL*TCICAY Trigger: ATAAGCGCAGATACAAGTCAAGAGGTTCAAAGGAGA...GAAGAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | ACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCTACTTCCTCCACAGCCTTACAGTGAATaGTTCCATGGATTAGTTCTT | + |
Preference number: 5 (lower is better) Translates to: TQTVVDISDITSSKLLPPQPYSE*FHGLVL Trigger: AAGAACTAATCCATGGAACAATTCACTGTAAGGCTG...TGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CCA 90 bp | CACAGGTTTTCAGTGTTCTCACAAGGATTTCCACTTTGCTTCACATaGATTTCTTTCCGTGCATTGCCATCATTGTCTGATTTTGATAAA | + |
Preference number: 5 (lower is better) Translates to: HRFSVFSQGFPLCFT*ISFRALPSLSDFDK Trigger: TTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGTGAGAACACTGAAAACCTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | ACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCTACTTCCTCCAATTTCTTTCCGTGCATaGCCATCATTGTCTGATTTT | + |
Preference number: 5 (lower is better) Translates to: TQTVVDISDITSSKLLPPISFRA*PSLSDF Trigger: AAAATCAGACAATGATGGCAATGCACGGAAAGAAAT...TGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTACAAGGATTTCCACTTaGCTTCACATGGATTTCTTT | + |
Preference number: 5 (lower is better) Translates to: DWGETLYTQTVVDISDITTRIST*LHMDFF Trigger: AAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGT...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | GAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGTCTATCTTGAGTTCATaGCTGAGTACATTAGGATTG | + |
Preference number: 5 (lower is better) Translates to: ETLYTQTVVDISDITSSKSILSS*LSTLGL Trigger: CAATCCTAATGTACTCAGCAATGAACTCAAGATAGA...CTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTC 36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS-3UTR CAA 90 bp | GAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCATCATTGTCTGATTTaGATAAAGGTTGTGCAGCTT | + |
Preference number: 5 (lower is better) Translates to: ETLYTQTVVDISDITSSKHHCLI*IKVVQL Trigger: AAGCTGCACAACCTTTATCAAAATCAGACAATGATG...CTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CCA 72 bp | GTGACATTCCTAGGGAAGAAGCTGAGATCTAGGCCCTaGAGCCAGCGCAGGACAGAACGACTCAGGCGGGAG | + |
Preference number: 6 (lower is better) Translates to: VTFLGKKLRSRP*SQRRTERLRRE Trigger: CTCCCGCCTGAGTCGTTCTGTCCTGCGCTGGCTCCAGGGCCTAGATCTCAGCTTCTTCCCTAGGAATGTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CCA 72 bp | GCTCCTAGGCGGATGTGGATACACCAGACATTTCTTTaGCTTCTTTCCTGCGGGAACTGCTGGTGGTGTAGG | + |
Preference number: 6 (lower is better) Translates to: APRRMWIHQTFL*LLSCGNCWWCR Trigger: CCTACACCACCAGCAGTTCCCGCAGGAAAGAAGCCAAAGAAATGTCTGGTGTATCCACATCCGCCTAGGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CCA 72 bp | GACAGAACGACTCAGGCGGGAGCTCCTAGGCGGATGTaGATACACCAGACATTTCTTTGGCTTCTTTCCTGC | + |
Preference number: 6 (lower is better) Translates to: DRTTQAGAPRRM*IHQTFLWLLSC Trigger: GCAGGAAAGAAGCCAAAGAAATGTCTGGTGTATCCACATCCGCCTAGGAGCTCCCGCCTGAGTCGTTCTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CCA 72 bp | GGCAGGAAGACGGTCGATTGTGATTTCTCCCACAGTTaGCTTGACATCAAACCACCCTGGATTCAGTTTTCT | + |
Preference number: 6 (lower is better) Translates to: GRKTVDCDFSHS*LDIKPPWIQFS Trigger: AGAAAACTGAATCCAGGGTGGTTTGATGTCAAGCCAACTGTGGGAGAAATCACAATCGACCGTCTTCCTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 72 bp | GGAAGACGGTCGATTGTGATTTCTCCCACAGTTGGCTaGACATCAAACCACCCTGGATTCAGTTTTCTGCTT | + |
Preference number: 6 (lower is better) Translates to: GRRSIVISPTVG*TSNHPGFSFLL Trigger: AAGCAGAAAACTGAATCCAGGGTGGTTTGATGTCAAGCCAACTGTGGGAGAAATCACAATCGACCGTCTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 90 bp | CTATGGGCAGGAAGACGGTCGATTGTGATTTCTCCCACAGTTGGCTaGACATCAAACCACCCTGGATTCAGTTTTCTGCTTAATTTTCTT | + |
Preference number: 6 (lower is better) Translates to: LWAGRRSIVISPTVG*TSNHPGFSFLLNFL Trigger: AAGAAAATTAAGCAGAAAACTGAATCCAGGGTGGTTTGATGTCAAGCCAACTGTGGGAGAAATCACAATCGACCGTCTTCCTGCCCATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 72 bp | TCACAGGTTTTCAGTGTTCTCACAAGGATTTCCACTTaGCTTCACATGGATTTCTTTCCGTGCATTGCCATC | + |
Preference number: 6 (lower is better) Translates to: SQVFSVLTRIST*LHMDFFPCIAI Trigger: GATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGTGAGAACACTGAAAACCTGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 90 bp | TGCCATCATTGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCCTTaGAACCTCTTGACTTGTATCTGCGCTTATAGCTATGGGCAGGAA | + |
Preference number: 6 (lower is better) Translates to: CHHCLILIKVVQLSP*NLLTCICAYSYGQE Trigger: TTCCTGCCCATAGCTATAAGCGCAGATACAAGTCAAGAGGTTCAAAGGAGAAAGCTGCACAACCTTTATCAAAATCAGACAATGATGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CCA 72 bp | TCAGTGTTCTCACAAGGATTTCCACTTTGCTTCACATaGATTTCTTTCCGTGCATTGCCATCATTGTCTGAT | + |
Preference number: 6 (lower is better) Translates to: SVFSQGFPLCFT*ISFRALPSLSD Trigger: ATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGTGAGAACACTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 72 bp | TGCTTCACATGGATTTCTTTCCGTGCATTGCCATCATaGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCC | + |
Preference number: 6 (lower is better) Translates to: CFTWISFRALPS*SDFDKGCAAFS Trigger: GGAGAAAGCTGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 90 bp | TCACAAGGATTTCCACTTTGCTTCACATGGATTTCTTTCCGTGCATaGCCATCATTGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCC | + |
Preference number: 6 (lower is better) Translates to: SQGFPLCFTWISFRA*PSLSDFDKGCAAFS Trigger: GGAGAAAGCTGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 90 bp | TTTCCACTTTGCTTCACATGGATTTCTTTCCGTGCATTGCCATCATaGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCCTTTGAACCT | + |
Preference number: 6 (lower is better) Translates to: FPLCFTWISFRALPS*SDFDKGCAAFSFEP Trigger: AGGTTCAAAGGAGAAAGCTGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS GCA 72 bp | TTCCACTTTGCTTCACATGGATTTCTTTCCGTGCATTaGCATCATTGTCTGATTTTGATAAAGGTTGTGCAG | + |
Preference number: 6 (lower is better) Translates to: FHFASHGFLSVH*HHCLILIKVVQ Trigger: CTGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 90 bp | CTTTGCAGCATTTGCAAAAGGATGAGGAATTCTATCTTGAGTTCATaGCTGAGTACATTAGGATTGCTTAGTAGTTCCGACAACCTAATG | + |
Preference number: 6 (lower is better) Translates to: LCSICKRMRNSILSS*LSTLGLLSSSDNLM Trigger: CATTAGGTTGTCGGAACTACTAAGCAATCCTAATGTACTCAGCAATGAACTCAAGATAGAATTCCTCATCCTTTTGCAAATGCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS TCA 72 bp | TCCTGTATCAGTATTTCAGGTACCCCAGCCTTACAGTaGATTGTTCCATGGATTAGTTCTTTAGGTAGTTTA | + |
Preference number: 6 (lower is better) Translates to: SCISISGTPALQ*IVPWISSLGSL Trigger: TAAACTACCTAAAGAACTAATCCATGGAACAATTCACTGTAAGGCTGGGGTACCTGAAATACTGATACAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 72 bp | TGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCCTTaGAACCTCTTGACTTGTATCTGCGCTTATAGCTAT | + |
Preference number: 6 (lower is better) Translates to: CLILIKVVQLSP*NLLTCICAYSY Trigger: ATAGCTATAAGCGCAGATACAAGTCAAGAGGTTCAAAGGAGAAAGCTGCACAACCTTTATCAAAATCAGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 72 bp | TTTCCACTTTGCTTCACATGGATTTCTTTCCGTGCATaGCCATCATTGTCTGATTTTGATAAAGGTTGTGCA | + |
Preference number: 6 (lower is better) Translates to: FPLCFTWISFRA*PSLSDFDKGCA Trigger: TGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 72 bp | CTTTGCAGCATTTGCAAAAGGATGAGGAATTCTATCTaGAGTTCATTGCTGAGTACATTAGGATTGCTTAGT | + |
Preference number: 6 (lower is better) Translates to: LCSICKRMRNSI*SSLLSTLGLLS Trigger: ACTAAGCAATCCTAATGTACTCAGCAATGAACTCAAGATAGAATTCCTCATCCTTTTGCAAATGCTGCAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |
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CDS CAA 90 bp | CTTAATTTTCTTTGCAGCATTTGCAAAAGGATGAGGAATTCTATCTaGAGTTCATTGCTGAGTACATTAGGATTGCTTAGTAGTTCCGAC | + |
Preference number: 6 (lower is better) Translates to: LNFLCSICKRMRNSI*SSLLSTLGLLSSSD Trigger: GTCGGAACTACTAAGCAATCCTAATGTACTCAGCAATGAACTCAAGATAGAATTCCTCATCCTTTTGCAAATGCTGCAAAGAAAATTAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033917.7 |