RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPATA4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031518

Ensembl transcript IDs: ENSMUST00000033917.7

Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp ACATTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCCTCCCACAGTTGGCTTaGCATCAAACCACCCTGGAT +
Preference number: 4 (lower is better)
Translates to: TLVISLLLSYFLHVLHCLLPQLA*HQTTLD
Trigger: ATCCAGGGTGGTTTGATGTCAAGCCAACTGTGGGAG...GAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR GCA 90 bp GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTCTTTGGCTTCTTTCCTaGGGGAACTGCTGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: DWGETLYTQTVVDISDITLWLLS*GNCWWC
Trigger: ACACCACCAGCAGTTCCCGCAGGAAAGAAGCCAAAG...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CCA 90 bp GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTGATTTCTCCCACAGTTaGCTTGACATCAAACCACCC +
Preference number: 4 (lower is better)
Translates to: DWGETLYTQTVVDISDITDFSHS*LDIKPP
Trigger: GGGTGGTTTGATGTCAAGCCAACTGTGGGAGAAATC...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR TCA 90 bp GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTACCCCAGCCTTACAGTaGATTGTTCCATGGATTAGT +
Preference number: 4 (lower is better)
Translates to: DWGETLYTQTVVDISDITTPALQ*IVPWIS
Trigger: ACTAATCCATGGAACAATTCACTGTAAGGCTGGGGT...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR GCA 90 bp TTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCTTCCTCTTGACTTGTATCTaGGCTTATAGCTATGGGCAG +
Preference number: 4 (lower is better)
Translates to: LVISLLLSYFLHVLHCLFLLTCI*AYSYGQ
Trigger: CTGCCCATAGCTATAAGCGCAGATACAAGTCAAGAG...GAAGAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR TCA 90 bp GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTCCCAGTTATCCAACTTaGCTTTTAAGGAGGTTCCAT +
Preference number: 4 (lower is better)
Translates to: DWGETLYTQTVVDISDITPSYPT*LLRRFH
Trigger: ATGGAACCTCCTTAAAAGTCAAGTTGGATAACTGGG...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR GCA 90 bp ACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATTTCTTTCCGTGCATTaGCATCATTGTCTGATTTTG +
Preference number: 4 (lower is better)
Translates to: TQTVVDISDITSSKLLPPFLSVH*HHCLIL
Trigger: CAAAATCAGACAATGATGGCAATGCACGGAAAGAAA...TGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR GCA 90 bp GAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGAAACTTCTCTATCTGTaGCCAGTTATCCAACTTGAC +
Preference number: 4 (lower is better)
Translates to: ETLYTQTVVDISDITSSKKLLYL*PVIQLD
Trigger: GTCAAGTTGGATAACTGGGCACAGATAGAGAAGTTT...CTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR GCA 90 bp GAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCAAGGATTTCCACTTTaGTTCACATGGATTTCTTTC +
Preference number: 4 (lower is better)
Translates to: ETLYTQTVVDISDITSSKQGFPL*FTWISF
Trigger: GAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTG...CTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR GCA 90 bp GAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCTGGATTCAGTTTTCTaGTTAATTTTCTTTGCAGCA +
Preference number: 4 (lower is better)
Translates to: ETLYTQTVVDISDITSSKLDSVF*LIFFAA
Trigger: TGCTGCAAAGAAAATTAAGCAGAAAACTGAATCCAG...CTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CCA 90 bp AAATCCCTGGTGACATTCCTAGGGAAGAAGCTGAGATCTAGGCCCTaGAGCCAGCGCAGGACAGAACGACTCAGGCGGGAGCTCCTAGGC +
Preference number: 5 (lower is better)
Translates to: KSLVTFLGKKLRSRP*SQRRTERLRRELLG
Trigger: GCCTAGGAGCTCCCGCCTGAGTCGTTCTGTCCTGCGCTGGCTCCAGGGCCTAGATCTCAGCTTCTTCCCTAGGAATGTCACCAGGGATTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp ACATTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCTCTCCCACAGTTGGCTaGACATCAAACCACCCTGGA +
Preference number: 5 (lower is better)
Translates to: TLVISLLLSYFLHVLHCLSPTVG*TSNHPG
Trigger: TCCAGGGTGGTTTGATGTCAAGCCAACTGTGGGAGA...GAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTACACCAGACATTTCTTaGGCTTCTTTCCTGCGGGAA +
Preference number: 5 (lower is better)
Translates to: DWGETLYTQTVVDISDITTPDIS*ASFLRE
Trigger: TTCCCGCAGGAAAGAAGCCAAAGAAATGTCTGGTGT...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp TTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCTTCGCCCAGTTATCCAACTaGACTTTTAAGGAGGTTCCA +
Preference number: 5 (lower is better)
Translates to: LVISLLLSYFLHVLHCLFAQLSN*TFKEVP
Trigger: TGGAACCTCCTTAAAAGTCAAGTTGGATAACTGGGC...GAAGAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp ATCCAAGACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATGTGCAGCTTTCTCCTTaGAACCTCTTGACTTGTATC +
Preference number: 5 (lower is better)
Translates to: IQDWGETLYTQTVVDISDVQLSP*NLLTCI
Trigger: GATACAAGTCAAGAGGTTCAAAGGAGAAAGCTGCAC...ATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTCTTGGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS GCA 90 bp CACAAGGATTTCCACTTTGCTTCACATGGATTTCTTTCCGTGCATTaGCATCATTGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCCT +
Preference number: 5 (lower is better)
Translates to: HKDFHFASHGFLSVH*HHCLILIKVVQLSP
Trigger: AGGAGAAAGCTGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp TTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCTTCCTGAGTACATTAGGATaGCTTAGTAGTTCCGACAAC +
Preference number: 5 (lower is better)
Translates to: LVISLLLSYFLHVLHCLFLSTLG*LSSSDN
Trigger: GTTGTCGGAACTACTAAGCAATCCTAATGTACTCAG...GAAGAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAA
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp TTAGTGATATCACTTCTTCTAAGCTACTTCCTCCATGTCCTTCACTGTCTCTTCTCTCCTTTGAACCTCTaGACTTGTATCTGCGCTTAT +
Preference number: 5 (lower is better)
Translates to: LVISLLLSYFLHVLHCLFSPLNL*TCICAY
Trigger: ATAAGCGCAGATACAAGTCAAGAGGTTCAAAGGAGA...GAAGAGACAGTGAAGGACATGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp ACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCTACTTCCTCCACAGCCTTACAGTGAATaGTTCCATGGATTAGTTCTT +
Preference number: 5 (lower is better)
Translates to: TQTVVDISDITSSKLLPPQPYSE*FHGLVL
Trigger: AAGAACTAATCCATGGAACAATTCACTGTAAGGCTG...TGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CCA 90 bp CACAGGTTTTCAGTGTTCTCACAAGGATTTCCACTTTGCTTCACATaGATTTCTTTCCGTGCATTGCCATCATTGTCTGATTTTGATAAA +
Preference number: 5 (lower is better)
Translates to: HRFSVFSQGFPLCFT*ISFRALPSLSDFDK
Trigger: TTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGTGAGAACACTGAAAACCTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp ACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCTACTTCCTCCAATTTCTTTCCGTGCATaGCCATCATTGTCTGATTTT +
Preference number: 5 (lower is better)
Translates to: TQTVVDISDITSSKLLPPISFRA*PSLSDF
Trigger: AAAATCAGACAATGATGGCAATGCACGGAAAGAAAT...TGGAGGAAGTAGCTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp GACTGGGGTGAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTACAAGGATTTCCACTTaGCTTCACATGGATTTCTTT +
Preference number: 5 (lower is better)
Translates to: DWGETLYTQTVVDISDITTRIST*LHMDFF
Trigger: AAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGT...AGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTCACCCCAGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp GAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGTCTATCTTGAGTTCATaGCTGAGTACATTAGGATTG +
Preference number: 5 (lower is better)
Translates to: ETLYTQTVVDISDITSSKSILSS*LSTLGL
Trigger: CAATCCTAATGTACTCAGCAATGAACTCAAGATAGA...CTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTC
36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS-3UTR CAA 90 bp GAGACATTATATACTCAGACTGTGGTAGACATTAGTGATATCACTTCTTCTAAGCATCATTGTCTGATTTaGATAAAGGTTGTGCAGCTT +
Preference number: 5 (lower is better)
Translates to: ETLYTQTVVDISDITSSKHHCLI*IKVVQL
Trigger: AAGCTGCACAACCTTTATCAAAATCAGACAATGATG...CTTAGAAGAAGTGATATCACTAATGTCTACCACAGTCTGAGTATATAATGTCTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CCA 72 bp GTGACATTCCTAGGGAAGAAGCTGAGATCTAGGCCCTaGAGCCAGCGCAGGACAGAACGACTCAGGCGGGAG +
Preference number: 6 (lower is better)
Translates to: VTFLGKKLRSRP*SQRRTERLRRE
Trigger: CTCCCGCCTGAGTCGTTCTGTCCTGCGCTGGCTCCAGGGCCTAGATCTCAGCTTCTTCCCTAGGAATGTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CCA 72 bp GCTCCTAGGCGGATGTGGATACACCAGACATTTCTTTaGCTTCTTTCCTGCGGGAACTGCTGGTGGTGTAGG +
Preference number: 6 (lower is better)
Translates to: APRRMWIHQTFL*LLSCGNCWWCR
Trigger: CCTACACCACCAGCAGTTCCCGCAGGAAAGAAGCCAAAGAAATGTCTGGTGTATCCACATCCGCCTAGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CCA 72 bp GACAGAACGACTCAGGCGGGAGCTCCTAGGCGGATGTaGATACACCAGACATTTCTTTGGCTTCTTTCCTGC +
Preference number: 6 (lower is better)
Translates to: DRTTQAGAPRRM*IHQTFLWLLSC
Trigger: GCAGGAAAGAAGCCAAAGAAATGTCTGGTGTATCCACATCCGCCTAGGAGCTCCCGCCTGAGTCGTTCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CCA 72 bp GGCAGGAAGACGGTCGATTGTGATTTCTCCCACAGTTaGCTTGACATCAAACCACCCTGGATTCAGTTTTCT +
Preference number: 6 (lower is better)
Translates to: GRKTVDCDFSHS*LDIKPPWIQFS
Trigger: AGAAAACTGAATCCAGGGTGGTTTGATGTCAAGCCAACTGTGGGAGAAATCACAATCGACCGTCTTCCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 72 bp GGAAGACGGTCGATTGTGATTTCTCCCACAGTTGGCTaGACATCAAACCACCCTGGATTCAGTTTTCTGCTT +
Preference number: 6 (lower is better)
Translates to: GRRSIVISPTVG*TSNHPGFSFLL
Trigger: AAGCAGAAAACTGAATCCAGGGTGGTTTGATGTCAAGCCAACTGTGGGAGAAATCACAATCGACCGTCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 90 bp CTATGGGCAGGAAGACGGTCGATTGTGATTTCTCCCACAGTTGGCTaGACATCAAACCACCCTGGATTCAGTTTTCTGCTTAATTTTCTT +
Preference number: 6 (lower is better)
Translates to: LWAGRRSIVISPTVG*TSNHPGFSFLLNFL
Trigger: AAGAAAATTAAGCAGAAAACTGAATCCAGGGTGGTTTGATGTCAAGCCAACTGTGGGAGAAATCACAATCGACCGTCTTCCTGCCCATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 72 bp TCACAGGTTTTCAGTGTTCTCACAAGGATTTCCACTTaGCTTCACATGGATTTCTTTCCGTGCATTGCCATC +
Preference number: 6 (lower is better)
Translates to: SQVFSVLTRIST*LHMDFFPCIAI
Trigger: GATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGTGAGAACACTGAAAACCTGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 90 bp TGCCATCATTGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCCTTaGAACCTCTTGACTTGTATCTGCGCTTATAGCTATGGGCAGGAA +
Preference number: 6 (lower is better)
Translates to: CHHCLILIKVVQLSP*NLLTCICAYSYGQE
Trigger: TTCCTGCCCATAGCTATAAGCGCAGATACAAGTCAAGAGGTTCAAAGGAGAAAGCTGCACAACCTTTATCAAAATCAGACAATGATGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CCA 72 bp TCAGTGTTCTCACAAGGATTTCCACTTTGCTTCACATaGATTTCTTTCCGTGCATTGCCATCATTGTCTGAT +
Preference number: 6 (lower is better)
Translates to: SVFSQGFPLCFT*ISFRALPSLSD
Trigger: ATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGTGAGAACACTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 72 bp TGCTTCACATGGATTTCTTTCCGTGCATTGCCATCATaGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCC +
Preference number: 6 (lower is better)
Translates to: CFTWISFRALPS*SDFDKGCAAFS
Trigger: GGAGAAAGCTGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 90 bp TCACAAGGATTTCCACTTTGCTTCACATGGATTTCTTTCCGTGCATaGCCATCATTGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCC +
Preference number: 6 (lower is better)
Translates to: SQGFPLCFTWISFRA*PSLSDFDKGCAAFS
Trigger: GGAGAAAGCTGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAATCCTTGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 90 bp TTTCCACTTTGCTTCACATGGATTTCTTTCCGTGCATTGCCATCATaGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCCTTTGAACCT +
Preference number: 6 (lower is better)
Translates to: FPLCFTWISFRALPS*SDFDKGCAAFSFEP
Trigger: AGGTTCAAAGGAGAAAGCTGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS GCA 72 bp TTCCACTTTGCTTCACATGGATTTCTTTCCGTGCATTaGCATCATTGTCTGATTTTGATAAAGGTTGTGCAG +
Preference number: 6 (lower is better)
Translates to: FHFASHGFLSVH*HHCLILIKVVQ
Trigger: CTGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 90 bp CTTTGCAGCATTTGCAAAAGGATGAGGAATTCTATCTTGAGTTCATaGCTGAGTACATTAGGATTGCTTAGTAGTTCCGACAACCTAATG +
Preference number: 6 (lower is better)
Translates to: LCSICKRMRNSILSS*LSTLGLLSSSDNLM
Trigger: CATTAGGTTGTCGGAACTACTAAGCAATCCTAATGTACTCAGCAATGAACTCAAGATAGAATTCCTCATCCTTTTGCAAATGCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS TCA 72 bp TCCTGTATCAGTATTTCAGGTACCCCAGCCTTACAGTaGATTGTTCCATGGATTAGTTCTTTAGGTAGTTTA +
Preference number: 6 (lower is better)
Translates to: SCISISGTPALQ*IVPWISSLGSL
Trigger: TAAACTACCTAAAGAACTAATCCATGGAACAATTCACTGTAAGGCTGGGGTACCTGAAATACTGATACAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 72 bp TGTCTGATTTTGATAAAGGTTGTGCAGCTTTCTCCTTaGAACCTCTTGACTTGTATCTGCGCTTATAGCTAT +
Preference number: 6 (lower is better)
Translates to: CLILIKVVQLSP*NLLTCICAYSY
Trigger: ATAGCTATAAGCGCAGATACAAGTCAAGAGGTTCAAAGGAGAAAGCTGCACAACCTTTATCAAAATCAGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 72 bp TTTCCACTTTGCTTCACATGGATTTCTTTCCGTGCATaGCCATCATTGTCTGATTTTGATAAAGGTTGTGCA +
Preference number: 6 (lower is better)
Translates to: FPLCFTWISFRA*PSLSDFDKGCA
Trigger: TGCACAACCTTTATCAAAATCAGACAATGATGGCAATGCACGGAAAGAAATCCATGTGAAGCAAAGTGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 72 bp CTTTGCAGCATTTGCAAAAGGATGAGGAATTCTATCTaGAGTTCATTGCTGAGTACATTAGGATTGCTTAGT +
Preference number: 6 (lower is better)
Translates to: LCSICKRMRNSI*SSLLSTLGLLS
Trigger: ACTAAGCAATCCTAATGTACTCAGCAATGAACTCAAGATAGAATTCCTCATCCTTTTGCAAATGCTGCAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7
CDS CAA 90 bp CTTAATTTTCTTTGCAGCATTTGCAAAAGGATGAGGAATTCTATCTaGAGTTCATTGCTGAGTACATTAGGATTGCTTAGTAGTTCCGAC +
Preference number: 6 (lower is better)
Translates to: LNFLCSICKRMRNSI*SSLLSTLGLLSSSD
Trigger: GTCGGAACTACTAAGCAATCCTAATGTACTCAGCAATGAACTCAAGATAGAATTCCTCATCCTTTTGCAAATGCTGCAAAGAAAATTAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033917.7