Pregenerated sensors for SPATA25 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017767

Ensembl transcript IDs: ENSMUST00000017911.4

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ACTGCACCCCCTCCACAGCTCCCTCTGGCTCTGGATGGGCCATCATaGAAGCTTGAGCCGCCCGGATCAGGTCCTCTTCCCGCAGGCCTG	+
Preference number: 5 (lower is better) Translates to: TAPPPQLPLALDGPS*KLEPPGSGPLPAGL Trigger: CAGGCCTGCGGGAAGAGGACCTGATCCGGGCGGCTCAAGCTTTCATGATGGCCCATCCAGAGCCAGAGGGAGCTGTGGAGGGGGTGCAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017911.4
CDS CCA 90 bp	CATGAAAGCTTGAGCCGCCCGGATCAGGTCCTCTTCCCGCAGGCCTaGCACAGGCACGGTAGGTATGCCAGCGATCATCATGGCCAGGGT	+
Preference number: 5 (lower is better) Translates to: HESLSRPDQVLFPQA*HRHGRYASDHHGQG Trigger: ACCCTGGCCATGATGATCGCTGGCATACCTACCGTGCCTGTGCCAGGCCTGCGGGAAGAGGACCTGATCCGGGCGGCTCAAGCTTTCATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017911.4
CDS CCA 90 bp	GAACCCCTCCTGGATCTCACTAAAGGCATCTGTCCAGAAGCCATGTaGGCATGGGCGTGGGCCTGCTCCCACTGCACCCCCTCCACAGCT	+
Preference number: 5 (lower is better) Translates to: EPLLDLTKGICPEAM*AWAWACSHCTPSTA Trigger: AGCTGTGGAGGGGGTGCAGTGGGAGCAGGCCCACGCCCATGCCCACATGGCTTCTGGACAGATGCCTTTAGTGAGATCCAGGAGGGGTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017911.4
CDS CCA 90 bp	TTCTGGAACAGGGGTCTGCCCAGCCCAGGCTCTCCAGCGGCCTCATaGGGGGCAATTTGGGACAGTATCGGTTGTGTTCCTTTCTCCGAG	+
Preference number: 5 (lower is better) Translates to: FWNRGLPSPGSPAAS*GAIWDSIGCVPFSE Trigger: CTCGGAGAAAGGAACACAACCGATACTGTCCCAAATTGCCCCCCATGAGGCCGCTGGAGAGCCTGGGCTGGGCAGACCCCTGTTCCAGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017911.4
CDS TCA 72 bp	GCTCCCTCTGGCTCTGGATGGGCCATCATGAAAGCTTaGGCCGCCCGGATCAGGTCCTCTTCCCGCAGGCCT	+
Preference number: 6 (lower is better) Translates to: APSGSGWAIMKA*AARIRSSSRRP Trigger: AGGCCTGCGGGAAGAGGACCTGATCCGGGCGGCTCAAGCTTTCATGATGGCCCATCCAGAGCCAGAGGGAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017911.4
CDS CCA 72 bp	AGGGGTCTGCCCAGCCCAGGCTCTCCAGCGGCCTCATaGGGGGCAATTTGGGACAGTATCGGTTGTGTTCCT	+
Preference number: 6 (lower is better) Translates to: RGLPSPGSPAAS*GAIWDSIGCVP Trigger: AGGAACACAACCGATACTGTCCCAAATTGCCCCCCATGAGGCCGCTGGAGAGCCTGGGCTGGGCAGACCCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017911.4
CDS CCA 72 bp	CTGGATCTCACTAAAGGCATCTGTCCAGAAGCCATGTaGGCATGGGCGTGGGCCTGCTCCCACTGCACCCCC	+
Preference number: 6 (lower is better) Translates to: LDLTKGICPEAM*AWAWACSHCTP Trigger: GGGGGTGCAGTGGGAGCAGGCCCACGCCCATGCCCACATGGCTTCTGGACAGATGCCTTTAGTGAGATCCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017911.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu