RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPATA24 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024352

Ensembl transcript IDs: ENSMUST00000025209.12, ENSMUST00000235760.2, ENSMUST00000235803.2, ENSMUST00000236539.2, ENSMUST00000236574.2, ENSMUST00000236971.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGGCAGCACGGGCCTCCCGCCTACCATTGCACTTGGTGATGAGCTaGTCCTTCTTGCTGGACTCCTGCAGGACTCTGCTCTTGACACTG +
Preference number: 1 (lower is better)
Translates to: GAARASRLPLHLVMS*SFLLDSCRTLLLTL
Trigger: CAGTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCGGGAGGCCCGTGCTGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR CCA 90 bp GGCACCGTCATTGGGCTGTTGGTAAAGAGCCCGTGTATGTTAACTTaGGGGGCAGCACGGGCCTCCCGCCTACCATTGCACTTGGTGATG +
Preference number: 1 (lower is better)
Translates to: GTVIGLLVKSPCMLT*GAARASRLPLHLVM
Trigger: CATCACCAAGTGCAATGGTAGGCGGGAGGCCCGTGCTGCCCCCCAAGTTAACATACACGGGCTCTTTACCAACAGCCCAATGACGGTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR GCA 90 bp CTACCATTGCACTTGGTGATGAGCTGGTCCTTCTTGCTGGACTCCTaGAGGACTCTGCTCTTGACACTGGAGAGCGCTTTTTCAAAGGCC +
Preference number: 1 (lower is better)
Translates to: LPLHLVMSWSFLLDS*RTLLLTLESAFSKA
Trigger: GGCCTTTGAAAAAGCGCTCTCCAGTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR GCA 90 bp AGAATACCGCACGCTGATCTGATCATGTCCATCATTTCCGTGACCTaGCTGGTCCCTGAAGGCACTTTCGAAGGACTGGACTTGCCTGTA +
Preference number: 1 (lower is better)
Translates to: RIPHADLIMSIISVT*LVPEGTFEGLDLPV
Trigger: TACAGGCAAGTCCAGTCCTTCGAAAGTGCCTTCAGGGACCAGGCAGGTCACGGAAATGATGGACATGATCAGATCAGCGTGCGGTATTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR CAA 90 bp CGGGCCTCCCGCCTACCATTGCACTTGGTGATGAGCTGGTCCTTCTaGCTGGACTCCTGCAGGACTCTGCTCTTGACACTGGAGAGCGCT +
Preference number: 2 (lower is better)
Translates to: RASRLPLHLVMSWSF*LDSCRTLLLTLESA
Trigger: AGCGCTCTCCAGTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCGGGAGGCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR-3UTR CCA 90 bp ACGGGCCTCCCGCCTACCATTGCACTTGGTGATGAGCTGGTCCTTCTTGCTGGACTTTCTCCAGCTGCTTaGACAGCACCTCCACCTCTC +
Preference number: 2 (lower is better)
Translates to: TGLPPTIALGDELVLLAGLSPAA*TAPPPL
Trigger: GAGAGGTGGAGGTGCTGTCCAAGCAGCTGGAGAAAG...TCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCGGGAGGCCCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR-3UTR CCA 90 bp CTTTCGAAGGACTGGACTTGCCTGTATCCTCAGCCGGGGGCAGAAGTTGGGGTACACTTGGTGATGAGCTaGTCCTTCTTGCTGGACTCC +
Preference number: 2 (lower is better)
Translates to: LSKDWTCLYPQPGAEVGVHLVMS*SFLLDS
Trigger: GGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTG...TACCCCAACTTCTGCCCCCGGCTGAGGATACAGGCAAGTCCAGTCCTTCGAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR-3UTR CCA 90 bp GCTGGACTCCTGCAGGACTCTGCTCTTGACACTGGAGAGCGCTTTTTCAAAGGCGGAGGGCTTTGGTTTTaGCATGAGCAGCTTTCTCCT +
Preference number: 2 (lower is better)
Translates to: AGLLQDSALDTGERFFKGGGLWF*HEQLSP
Trigger: AGGAGAAAGCTGCTCATGCCAAAACCAAAGCCCTCC...GCCTTTGAAAAAGCGCTCTCCAGTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR-3UTR CCA 90 bp AGAATACCGCACGCTGATCTGATCATGTCCATCATTTCCGTGACCTGCCTGGTCTGGCCAGGAGGGCTTTaGTTTTGGCATGAGCAGCTT +
Preference number: 2 (lower is better)
Translates to: RIPHADLIMSIISVTCLVWPGGL*FWHEQL
Trigger: AAGCTGCTCATGCCAAAACCAAAGCCCTCCTGGCCA...GACCAGGCAGGTCACGGAAATGATGGACATGATCAGATCAGCGTGCGGTATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR CCA 72 bp CGGGCCTCCCGCCTACCATTGCACTTGGTGATGAGCTaGTCCTTCTTGCTGGACTCCTGCAGGACTCTGCTC +
Preference number: 3 (lower is better)
Translates to: RASRLPLHLVMS*SFLLDSCRTLL
Trigger: GAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCGGGAGGCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR CCA 72 bp CTGGACTTGCCTGTATCCTCAGCCGGGGGCAGAAGTTaGGGTAGAGCCCTGCTTTTGGCACCGTCATTGGGC +
Preference number: 3 (lower is better)
Translates to: LDLPVSSAGGRS*GRALLLAPSLG
Trigger: GCCCAATGACGGTGCCAAAAGCAGGGCTCTACCCCAACTTCTGCCCCCGGCTGAGGATACAGGCAAGTCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR CCA 72 bp ATTGGGCTGTTGGTAAAGAGCCCGTGTATGTTAACTTaGGGGGCAGCACGGGCCTCCCGCCTACCATTGCAC +
Preference number: 3 (lower is better)
Translates to: IGLLVKSPCMLT*GAARASRLPLH
Trigger: GTGCAATGGTAGGCGGGAGGCCCGTGCTGCCCCCCAAGTTAACATACACGGGCTCTTTACCAACAGCCCAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR-3UTR CAA 90 bp GCTGATCTGATCATGTCCATCATTTCCGTGACCTGCCTGGTCCCTGAAGGCACTGGTAGAGCCCTGCTTTaGGCACCGTCATTGGGCTGT +
Preference number: 3 (lower is better)
Translates to: ADLIMSIISVTCLVPEGTGRALL*APSLGC
Trigger: ACAGCCCAATGACGGTGCCAAAAGCAGGGCTCTACC...AGTGCCTTCAGGGACCAGGCAGGTCACGGAAATGATGGACATGATCAGATCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR GCA 72 bp CACTTGGTGATGAGCTGGTCCTTCTTGCTGGACTCCTaGAGGACTCTGCTCTTGACACTGGAGAGCGCTTTT +
Preference number: 3 (lower is better)
Translates to: HLVMSWSFLLDS*RTLLLTLESAF
Trigger: AAAAGCGCTCTCCAGTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR-3UTR CAA 90 bp GAGCGCTTTTTCAAAGGCCATCTTCTCTTTCTCCAGCTGCTTGGACAGCACCTCAACTTCTCTTCTTCCTaGGCCAGGAGGGCTTTGGTT +
Preference number: 3 (lower is better)
Translates to: ERFFKGHLLFLQLLGQHLNFSSS*ARRALV
Trigger: AACCAAAGCCCTCCTGGCCAAGGAAGAAGAGAAGTT...GAGGTGCTGTCCAAGCAGCTGGAGAAAGAGAAGATGGCCTTTGAAAAAGCGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
CDS-3UTR GCA 90 bp GCACGGGCCTCCCGCCTACCATTGCACTTGGTGATGAGCTGGTCCTTCTTGCTGTCCTGGAGAACCATCTaGAACAGAGCCTGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: ARASRLPLHLVMSWSFLLSWRTI*NRAWLR
Trigger: CCTGAGCCAGGCTCTGTTGCAGATGGTTCTCCAGGA...CAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCGGGAGGCCCGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
3UTR CAA 72 bp CGCCTACCATTGCACTTGGTGATGAGCTGGTCCTTCTaGCTGGACTCCTGCAGGACTCTGCTCTTGACACTG +
Preference number: 4 (lower is better)
Translates to: RLPLHLVMSWSF*LDSCRTLLLTL
Trigger: CAGTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
CDS-3UTR TCA 90 bp GAGCGCTTTTTCAAAGGCCATCTTCTCTTTCTCCAGCTGCTTGGACAGCACCTCATCACGTCCCGCAGTTaGTCGAAGGCGAGACACACT +
Preference number: 4 (lower is better)
Translates to: ERFFKGHLLFLQLLGQHLITSRS*SKARHT
Trigger: AGTGTGTCTCGCCTTCGATCAACTGCGGGACGTGAT...GAGGTGCTGTCCAAGCAGCTGGAGAAAGAGAAGATGGCCTTTGAAAAAGCGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
CDS-3UTR TCA 90 bp GGTCTCCTGCTGCTTTTGGATCCGGAAGTCAGATATGTGATTCCTGAAATTCTGGCAGGACTCTGCTCTTaGCACTGGAGAGCCTCTCCC +
Preference number: 4 (lower is better)
Translates to: GLLLLLDPEVRYVIPEILAGLCS*HWRASP
Trigger: GGGAGAGGCTCTCCAGTGTCAAGAGCAGAGTCCTGC...CAGAATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS-3UTR CCA 90 bp CAAACTGTAACTTCTCTTCTTCCTTGGCCAGGAGGGCTTTGGTTTTGGCATGAGATCTGCAACAGAGCCTaGCTCAGGAAGGGACAGGGG +
Preference number: 4 (lower is better)
Translates to: QTVTSLLPWPGGLWFWHEICNRA*LRKGQG
Trigger: CCCCTGTCCCTTCCTGAGCCAGGCTCTGTTGCAGAT...CTCATGCCAAAACCAAAGCCCTCCTGGCCAAGGAAGAAGAGAAGTTACAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
CDS-3UTR TCA 90 bp CTCCCAGAGCAAACTGTAACTTCTCTTCTTCCTTGGCCAGGAGGGCTTTGGTTTTGGATAAGTTCCTCCTaGGATTCAATCACGTCCCGC +
Preference number: 4 (lower is better)
Translates to: LPEQTVTSLLPWPGGLWFWISSS*DSITSR
Trigger: GCGGGACGTGATTGAATCTCAGGAGGAACTTATCCA...AAACCAAAGCCCTCCTGGCCAAGGAAGAAGAGAAGTTACAGTTTGCTCTGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
CDS-3UTR CCA 90 bp GTAGGTCTCCTGCTGCTTTTGGATCCGGAAGTCAGATATGTGATTCCTGAAATTGCTGGTCCTTCTTGCTaGACTCCTGCAGGACTCTGC +
Preference number: 4 (lower is better)
Translates to: VGLLLLLDPEVRYVIPEIAGPSC*TPAGLC
Trigger: GCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGC...AATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS-3UTR GCA 90 bp GGTCTCCTGCTGCTTTTGGATCCGGAAGTCAGATATGTGATTCCTGAAATTCTGTTCTTGCTGGACTCCTaGAGGACTCTGCTCTTGACA +
Preference number: 4 (lower is better)
Translates to: GLLLLLDPEVRYVIPEILFLLDS*RTLLLT
Trigger: TGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAA...CAGAATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS-3UTR CCA 90 bp GGTCTCCTGCTGCTTTTGGATCCGGAAGTCAGATATGTGATTCCTGAAATTCTGGGAGGGCTTTGGTTTTaGCATGAGCAGCTTTCTCCT +
Preference number: 4 (lower is better)
Translates to: GLLLLLDPEVRYVIPEILGGLWF*HEQLSP
Trigger: AGGAGAAAGCTGCTCATGCCAAAACCAAAGCCCTCC...CAGAATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS-3UTR CCA 90 bp GTAGGTCTCCTGCTGCTTTTGGATCCGGAAGTCAGATATGTGATTCCTGAAATTCACTTGGTGATGAGCTaGTCCTTCTTGCTGGACTCC +
Preference number: 4 (lower is better)
Translates to: VGLLLLLDPEVRYVIPEIHLVMS*SFLLDS
Trigger: GGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTG...AATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS-3UTR TCA 90 bp ATTCCTGAAATTCTGTTTCTGCTGGCTGATAACCTGCTGCAACTCTTTAATCTCATCACGTCCCGCAGTTaGTCGAAGGCGAGACACACT +
Preference number: 4 (lower is better)
Translates to: IPEILFLLADNLLQLFNLITSRS*SKARHT
Trigger: AGTGTGTCTCGCCTTCGATCAACTGCGGGACGTGAT...GAGATTAAAGAGTTGCAGCAGGTTATCAGCCAGCAGAAACAGAATTTCAGGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS-3UTR CCA 90 bp CTCCTGCTGCTTTTGGATCCGGAAGTCAGATATGTGATTCCTGAAATTCTGTTTTGGCCAGGAGGGCTTTaGTTTTGGCATGAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: LLLLLDPEVRYVIPEILFWPGGL*FWHEQL
Trigger: AAGCTGCTCATGCCAAAACCAAAGCCCTCCTGGCCA...AAACAGAATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS-3UTR TCA 90 bp CTGAAATTCTGTTTCTGCTGGCTGATAACCTGCTGCAACTCTTTAATCTCATTCTGGATAAGTTCCTCCTaGGATTCAATCACGTCCCGC +
Preference number: 4 (lower is better)
Translates to: LKFCFCWLITCCNSLISFWISSS*DSITSR
Trigger: GCGGGACGTGATTGAATCTCAGGAGGAACTTATCCA...GAATGAGATTAAAGAGTTGCAGCAGGTTATCAGCCAGCAGAAACAGAATTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS-3UTR CCA 90 bp CTGAAATTCTGTTTCTGCTGGCTGATAACCTGCTGCAACTCTTTAATCTCATTCACAAAATTCTCATCCTaGAGAACCATCACATTCCTC +
Preference number: 4 (lower is better)
Translates to: LKFCFCWLITCCNSLISFTKFSS*RTITFL
Trigger: GAGGAATGTGATGGTTCTCCAGGATGAGAATTTTGT...GAATGAGATTAAAGAGTTGCAGCAGGTTATCAGCCAGCAGAAACAGAATTTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS CCA 90 bp GGGGCAGCACGGGCCTCCCGCCTACCATTGCACTTGGTGATGAGCTaGTCCTTCTTGCTGGACTCCTGCAGGACTCTGCTCTTGACAGCT +
Preference number: 5 (lower is better)
Translates to: GAARASRLPLHLVMS*SFLLDSCRTLLLTA
Trigger: AGCTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCGGGAGGCCCGTGCTGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236574.2
CDS-3UTR CAA 90 bp ACGGGCCTCCCGCCTACCATTGCACTTGGTGATGAGCTGGTCCTTCTTGCTGGAAATCACGTCCCGCAGTaGATCGAAGGCGAGACACAC +
Preference number: 5 (lower is better)
Translates to: TGLPPTIALGDELVLLAGNHVPQ*IEGETH
Trigger: GTGTGTCTCGCCTTCGATCAACTGCGGGACGTGATT...TCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCGGGAGGCCCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235803.2
CDS CCA 90 bp ATTTCTCCCTGGAACACTGACGGCTACGGGCCCGACGCATTCCTGTaGCTTTCTTACGCTTCTGATCCAGCACCTGGGCCATGTAGGTCT +
Preference number: 5 (lower is better)
Translates to: ISPWNTDGYGPDAFL*LSYASDPAPGPCRS
Trigger: AGACCTACATGGCCCAGGTGCTGGATCAGAAGCGTAAGAAAGCCACAGGAATGCGTCGGGCCCGTAGCCGTCAGTGTTCCAGGGAGAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025209.12
ENSMUST00000236539.2
CDS GCA 90 bp ATTTCATTGCACTTGGTGATGAGCTGGTCCTTCTTGCTGGACTCCTaGAGGACTCTGCTCTTGACACTGGAGAGCGCTTTTTCAAAGGCC +
Preference number: 5 (lower is better)
Translates to: ISLHLVMSWSFLLDS*RTLLLTLESAFSKA
Trigger: GGCCTTTGAAAAAGCGCTCTCCAGTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025209.12
CDS CCA 90 bp CCAGAGCAAACTGTAACTTCTCTTCTTCCTTGGCCAGGAGGGCTTTaGTTTTGGCATGAGCAGCTTTCTCCTCCACATTCCTCAGCTGGT +
Preference number: 5 (lower is better)
Translates to: PEQTVTSLLPWPGGL*FWHEQLSPPHSSAG
Trigger: ACCAGCTGAGGAATGTGGAGGAGAAAGCTGCTCATGCCAAAACCAAAGCCCTCCTGGCCAAGGAAGAAGAGAAGTTACAGTTTGCTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236971.2
CDS GCA 90 bp CTACCATTGCACTTGGTGATGAGCTGGTCCTTCTTGCTGGACTCCTaGAGGACTCTGCTCTTGACAGCTTTTTCAAAGGCCATCTTCTCT +
Preference number: 5 (lower is better)
Translates to: LPLHLVMSWSFLLDS*RTLLLTAFSKAIFS
Trigger: AGAGAAGATGGCCTTTGAAAAAGCTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236574.2
CDS-3UTR CAA 90 bp GGTCTCCTGCTGCTTTTGGATCCGGAAGTCAGATATGTGATTCCTGAAATTCTGATGAGCTGGTCCTTCTaGCTGGACTCCTGCAGGACT +
Preference number: 5 (lower is better)
Translates to: GLLLLLDPEVRYVIPEILMSWSF*LDSCRT
Trigger: AGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCAT...CAGAATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS GCA 90 bp ATTTCATTGCACTTGGTGATGAGCTGGTCCTTCTTGCTGGACTCCTaGAGGACTCTGCTCTTGACAGCTTTTTCAAAGGCCATCTTCTCT +
Preference number: 5 (lower is better)
Translates to: ISLHLVMSWSFLLDS*RTLLLTAFSKAIFS
Trigger: AGAGAAGATGGCCTTTGAAAAAGCTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236539.2
CDS-3UTR CAA 90 bp ATTCCTGAAATTCTGTTTCTGCTGGCTGATAACCTGCTGCAACTCTTTAATCTCAATCACGTCCCGCAGTaGATCGAAGGCGAGACACAC +
Preference number: 5 (lower is better)
Translates to: IPEILFLLADNLLQLFNLNHVPQ*IEGETH
Trigger: GTGTGTCTCGCCTTCGATCAACTGCGGGACGTGATT...GAGATTAAAGAGTTGCAGCAGGTTATCAGCCAGCAGAAACAGAATTTCAGGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS-3UTR CAA 90 bp ATTCCTGAAATTCTGTTTCTGCTGGCTGATAACCTGCTGCAACTCTTTAATCTCAACTTCTCTTCTTCCTaGGCCAGGAGGGCTTTGGTT +
Preference number: 5 (lower is better)
Translates to: IPEILFLLADNLLQLFNLNFSSS*ARRALV
Trigger: AACCAAAGCCCTCCTGGCCAAGGAAGAAGAGAAGTT...GAGATTAAAGAGTTGCAGCAGGTTATCAGCCAGCAGAAACAGAATTTCAGGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS CCA 72 bp TGGAACACTGACGGCTACGGGCCCGACGCATTCCTGTaGCTTTCTTACGCTTCTGATCCAGCACCTGGGCCA +
Preference number: 6 (lower is better)
Translates to: WNTDGYGPDAFL*LSYASDPAPGP
Trigger: TGGCCCAGGTGCTGGATCAGAAGCGTAAGAAAGCCACAGGAATGCGTCGGGCCCGTAGCCGTCAGTGTTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025209.12
ENSMUST00000236539.2
CDS GCA 72 bp CACTTGGTGATGAGCTGGTCCTTCTTGCTGGACTCCTaGAGGACTCTGCTCTTGACACTGGAGAGCCTCTCC +
Preference number: 6 (lower is better)
Translates to: HLVMSWSFLLDS*RTLLLTLESLS
Trigger: GGAGAGGCTCTCCAGTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS CAA 90 bp CGGGCCTCCCGCCTACCATTGCACTTGGTGATGAGCTGGTCCTTCTaGCTGGACTCCTGCAGGACTCTGCTCTTGACAGCTTTTTCAAAG +
Preference number: 6 (lower is better)
Translates to: RASRLPLHLVMSWSF*LDSCRTLLLTAFSK
Trigger: CTTTGAAAAAGCTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCGGGAGGCCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236574.2
CDS TCA 72 bp GGTCCTTCTTGCTGGACTCCTGCAGGACTCTGCTCTTaGCACTGGAGAGCCTCTCCCAGAGCAAACTGTAAC +
Preference number: 6 (lower is better)
Translates to: GPSCWTPAGLCS*HWRASPRANCN
Trigger: GTTACAGTTTGCTCTGGGAGAGGCTCTCCAGTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235760.2
CDS CAA 72 bp CGCCTACCATTGCACTTGGTGATGAGCTGGTCCTTCTaGCTGGACTCCTGCAGGACTCTGCTCTTGACAGCT +
Preference number: 6 (lower is better)
Translates to: RLPLHLVMSWSF*LDSCRTLLLTA
Trigger: AGCTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236574.2
CDS GCA 72 bp CACTTGGTGATGAGCTGGTCCTTCTTGCTGGACTCCTaGAGGACTCTGCTCTTGACAGCTTTTTCAAAGGCC +
Preference number: 6 (lower is better)
Translates to: HLVMSWSFLLDS*RTLLLTAFSKA
Trigger: GGCCTTTGAAAAAGCTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000236539.2
ENSMUST00000236574.2
CDS CAA 90 bp ACGCTTCTGATCCAGCACCTGGGCCATGTAGGTCTCCTGCTGCTTTaGGATCCGGAAGTCAGATATGTGATTCCTGAAATTCTGTTTCTG +
Preference number: 6 (lower is better)
Translates to: TLLIQHLGHVGLLLL*DPEVRYVIPEILFL
Trigger: CAGAAACAGAATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACCTACATGGCCCAGGTGCTGGATCAGAAGCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025209.12
ENSMUST00000236539.2
CDS CAA 72 bp ATCCAGCACCTGGGCCATGTAGGTCTCCTGCTGCTTTaGGATCCGGAAGTCAGATATGTGATTCCTGAAATT +
Preference number: 6 (lower is better)
Translates to: IQHLGHVGLLLL*DPEVRYVIPEI
Trigger: AATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACCTACATGGCCCAGGTGCTGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025209.12
ENSMUST00000236539.2