Pregenerated sensors for SPATA22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000112920Ensembl transcript IDs: ENSMUST00000092926.11
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGATGCCTGCAGTGCACTaGCTCTGTCTGGGCCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVMPAVH*LCLGLS Trigger: TGAAAGGCCCAGACAGAGCCAGTGCACTGCAGGCAT...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR TCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGAATGTGGGCCAGATGTaGCAGCTGAATCCAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVNVGQM*QLNPGQ Trigger: CTGTCCTGGATTCAGCTGTCACATCTGGCCCACATT...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTGCACTGGCTCTGTCTaGGCCTTTCATTGTAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVCTGSV*AFHCRA Trigger: GGCTCTACAATGAAAGGCCCAGACAGAGCCAGTGCA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR TCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTGTCCAACACACCTGTaGACTCGGCCTCTAATCAGT | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVCPTHL*TRPLIS Trigger: ACTGATTAGAGGCCGAGTTCACAGGTGTGTTGGACA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGCCACGCCCAATCTGTTaGAAAAGAAGGGGAACCGTA | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVPRPIC*KRRGTV Trigger: TACGGTTCCCCTTCTTTTCCAACAGATTGGGCGTGG...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR GCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGCTTGGTTTAAATGCCTaGAGTGCACTGGCTCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVLGLNA*SALALS Trigger: AGACAGAGCCAGTGCACTGCAGGCATTTAAACCAAG...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTTTCTGATTGAACAATaGCACAGGCAAACAGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVFLIEQ*HRQTAC Trigger: GCAGGCTGTTTGCCTGTGCCATTGTTCAATCAGAAA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR TCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTCCTCTTTTTCTGATTaGACAATGGCACAGGCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVSSFSD*TMAQAN Trigger: GTTTGCCTGTGCCATTGTTCAATCAGAAAAAGAGGA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR TCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTGTCAGAAACAGTACTaGCACCTGGATCATTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVCQKQY*HLDHSE Trigger: TTCAGAATGATCCAGGTGTCAGTACTGTTTCTGACA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR GCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGAAAACTTGGTTTAAATaGCTGCAGTGCACTGGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVKTWFK*LQCTGS Trigger: AGAGCCAGTGCACTGCAGGCATTTAAACCAAGTTTT...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR GCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGAGAAGTACAGTTTTCTaGACATGTGCTCGCCAATAC | + |
|
Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVRSTVF*TCARQY Trigger: GTATTGGCGAGCACATGTGCAGAAAACTGTACTTCT...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR GCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTTGTTCAGAAGCAGATaGTGGTCTGACAGAAACACA | + |
|
Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVLFRSR*WSDRNT Trigger: TGTGTTTCTGTCAGACCAGCATCTGCTTCTGAACAA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTTCAGAAGCAGATGCTaGTCTGACAGAAACACACTT | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVFRSRC*SDRNTL Trigger: AAGTGTGTTTCTGTCAGACCAGCATCTGCTTCTGAA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR TCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGCTTACAGTTTTATGCTaGGGTCGAAAATCCCAAGTT | + |
|
Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVLTVLC*GRKSQV Trigger: AACTTGGGATTTTCGACCTCAGCATAAAACTGTAAG...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR TCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGAACTGTTTTTGTTGTTaGGCTCCCAAATTCACTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVNCFCC*APKFTG Trigger: TCCAGTGAATTTGGGAGCTCAACAACAAAAACAGTT...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR GCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGAGTTTTCTGCACATGTaGTCGCCAATACTTCATACT | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVSFLHM*SPILHT Trigger: AGTATGAAGTATTGGCGAGCACATGTGCAGAAAACT...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGGCCTCTAATCAGTCTTaGAAGTTCACGATCAATTTC | + |
|
Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVASNQS*KFTINF Trigger: GAAATTGATCGTGAACTTCCAAGACTGATTAGAGGC...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR TCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGACACCTGGATCATTCTaGAGTGGATTAGAAGTTAAT | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVTPGSF*SGLEVN Trigger: ATTAACTTCTAATCCACTTCAGAATGATCCAGGTGT...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR TCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTCTTTTTCCTTTAACTaGTGCAAAGTACCTTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVSFSFN*CKVPSF Trigger: GAAGGAAGGTACTTTGCATCAGTTAAAGGAAAAAGA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR TCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGCATAAGAAAAGTCTTTaGATAATGTGGGCCAGATGT | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVHKKSL*IMWARC Trigger: ACATCTGGCCCACATTATTCAAAGACTTTTCTTATG...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR GCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGCTTCATCTCAGCATCTaGAATTGTAACAAATGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVLHLSI*NCNKCL Trigger: CAAGCATTTGTTACAATTGCAGATGCTGAGATGAAG...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGCAGAGAATTTTCTCTTaGAATATCTCCCAACACTGT | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVQRIFS*NISQHC Trigger: ACAGTGTTGGGAGATATTCCAAGAGAAAATTCTCTG...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CCA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGATTTTGTTGAAAACTTaGTTTAAATGCCTGCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: LNHASGKAVTAKAPAHTVILLKT*FKCLQC Trigger: GCACTGCAGGCATTTAAACCAAGTTTTCAACAAAAT...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CAA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGCCCACGCCCAATCTGTaGGAAAAGAAGGGGAACCGT | + |
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Preference number: 5 (lower is better) Translates to: LNHASGKAVTAKAPAHTVPTPNL*EKKGNR Trigger: ACGGTTCCCCTTCTTTTCCAACAGATTGGGCGTGGG...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS GCA 90 bp | TTGTTGAGCTCCCAAATTCACTGGACAAGAACTGAACTCACTGTTTaGCGCAGGGCTTACAGTTTTATGCTGAGGTCGAAAATCCCAAGT | + |
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Preference number: 5 (lower is better) Translates to: LLSSQIHWTRTELTV*RRAYSFMLRSKIPS Trigger: ACTTGGGATTTTCGACCTCAGCATAAAACTGTAAGCCCTGCGGCAAACAGTGAGTTCAGTTCTTGTCCAGTGAATTTGGGAGCTCAACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CAA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGAGCAGAAGCTGGTATTaGCCCTGTATTCACTGTTTT | + |
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Preference number: 5 (lower is better) Translates to: LNHASGKAVTAKAPAHTVSRSWY*PCIHCF Trigger: AAAACAGTGAATACAGGGCAAATACCAGCTTCTGCT...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CAA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGGAACTGTTTTTGTTGTaGAGCTCCCAAATTCACTGG | + |
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Preference number: 5 (lower is better) Translates to: LNHASGKAVTAKAPAHTVELFLL*SSQIHW Trigger: CCAGTGAATTTGGGAGCTCAACAACAAAAACAGTTC...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS TCA 90 bp | CCAGGTAAGTTAGGAAATTCAGGTGTTTGGAACTGTTTTTGTTGTTaGGCTCCCAAATTCACTGGACAAGAACTGAACTCACTGTTTGCC | + |
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Preference number: 5 (lower is better) Translates to: PGKLGNSGVWNCFCC*APKFTGQELNSLFA Trigger: GGCAAACAGTGAGTTCAGTTCTTGTCCAGTGAATTTGGGAGCTCAACAACAAAAACAGTTCCAAACACCTGAATTTCCTAACTTACCTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CAA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTTTAGACACAGAATCTaGACTTCTCCAGGGATAAGA | + |
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Preference number: 5 (lower is better) Translates to: LNHASGKAVTAKAPAHTVFRHRI*TSPGIR Trigger: TCTTATCCCTGGAGAAGTCAAGATTCTGTGTCTAAA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CAA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTCAGAGAATTTTCTCTaGGAATATCTCCCAACACTG | + |
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Preference number: 5 (lower is better) Translates to: LNHASGKAVTAKAPAHTVSENFL*EYLPTL Trigger: CAGTGTTGGGAGATATTCCAAGAGAAAATTCTCTGA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS TCA 90 bp | TCTCTTGGAATATCTCCCAACACTGTTTTCTTAAATGGATTTTGTTaGAAACTTGGTTTAAATGCCTGCAGTGCACTGGCTCTGTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: SLGISPNTVFLNGFC*KLGLNACSALALSG Trigger: CCCAGACAGAGCCAGTGCACTGCAGGCATTTAAACCAAGTTTTCAACAAAATCCATTTAAGAAAACAGTGTTGGGAGATATTCCAAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CAA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGTGTTTGGAACTGTTTTaGTTGTTGAGCTCCCAAATT | + |
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Preference number: 5 (lower is better) Translates to: LNHASGKAVTAKAPAHTVCLELF*LLSSQI Trigger: AATTTGGGAGCTCAACAACAAAAACAGTTCCAAACA...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS-3UTR CAA 90 bp | TTAAACCATGCAAGTGGTAAAGCAGTGACAGCAAAAGCTCCTGCTCATACTGTGAGGAAATTCAGGTGTTaGGAACTGTTTTTGTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LNHASGKAVTAKAPAHTVRKFRC*ELFLLL Trigger: CAACAACAAAAACAGTTCCAAACACCTGAATTTCCT...CACAGTATGAGCAGGAGCTTTTGCTGTCACTGCTTTACCACTTGCATGGTTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS CCA 90 bp | GTCGTAGTGTCCAACACACCTGTGAACTCGGCCTCTAATCAGTCTTaGAAGTTCACGATCAATTTCATAAAATACACATGGAAGAATATT | + |
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Preference number: 5 (lower is better) Translates to: VVVSNTPVNSASNQS*KFTINFIKYTWKNI Trigger: AATATTCTTCCATGTGTATTTTATGAAATTGATCGTGAACTTCCAAGACTGATTAGAGGCCGAGTTCACAGGTGTGTTGGACACTACGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS GCA 90 bp | GCTGAATCCAGGACAGCCAATATTTCAAAAAGAAGTACAGTTTTCTaGACATGTGCTCGCCAATACTTCATACTTTCAATAACTGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: AESRTANISKRSTVF*TCARQYFILSITAE Trigger: TTCTGCAGTTATTGAAAGTATGAAGTATTGGCGAGCACATGTGCAGAAAACTGTACTTCTTTTTGAAATATTGGCTGTCCTGGATTCAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS CAA 72 bp | CCACCTCTGGATTCACAGCTTCCCACGCCCAATCTGTaGGAAAAGAAGGGGAACCGTAACTGTCAGAAACAG | + |
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Preference number: 6 (lower is better) Translates to: PPLDSQLPTPNL*EKKGNRNCQKQ Trigger: CTGTTTCTGACAGTTACGGTTCCCCTTCTTTTCCAACAGATTGGGCGTGGGAAGCTGTGAATCCAGAGGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS CCA 72 bp | CACCTCTGGATTCACAGCTTCCCACGCCCAATCTGTTaGAAAAGAAGGGGAACCGTAACTGTCAGAAACAGT | + |
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Preference number: 6 (lower is better) Translates to: HLWIHSFPRPIC*KRRGTVTVRNS Trigger: ACTGTTTCTGACAGTTACGGTTCCCCTTCTTTTCCAACAGATTGGGCGTGGGAAGCTGTGAATCCAGAGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS GCA 72 bp | TCCCAAATTCACTGGACAAGAACTGAACTCACTGTTTaGCGCAGGGCTTACAGTTTTATGCTGAGGTCGAAA | + |
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Preference number: 6 (lower is better) Translates to: SQIHWTRTELTV*RRAYSFMLRSK Trigger: TTTCGACCTCAGCATAAAACTGTAAGCCCTGCGGCAAACAGTGAGTTCAGTTCTTGTCCAGTGAATTTGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS TCA 72 bp | GGATTAGAAGTTAATGGCTGTCTGTTCCTCTTTTTCTaGTTGAACAATGGCACAGGCAAACAGCCTGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: GLEVNGCLFLFF*LNNGTGKQPAV Trigger: TACAGCAGGCTGTTTGCCTGTGCCATTGTTCAATCAGAAAAAGAGGAACAGACAGCCATTAACTTCTAATCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS TCA 72 bp | AACTCACTGTTTGCCGCAGGGCTTACAGTTTTATGCTaGGGTCGAAAATCCCAAGTTCTCAAGCTAGTATTT | + |
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Preference number: 6 (lower is better) Translates to: NSLFAAGLTVLC*GRKSQVLKLVF Trigger: AAATACTAGCTTGAGAACTTGGGATTTTCGACCTCAGCATAAAACTGTAAGCCCTGCGGCAAACAGTGAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS TCA 72 bp | TTTGTTGTTGAGCTCCCAAATTCACTGGACAAGAACTaGACTCACTGTTTGCCGCAGGGCTTACAGTTTTAT | + |
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Preference number: 6 (lower is better) Translates to: FVVELPNSLDKN*THCLPQGLQFY Trigger: ATAAAACTGTAAGCCCTGCGGCAAACAGTGAGTTCAGTTCTTGTCCAGTGAATTTGGGAGCTCAACAACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS CCA 72 bp | TCCAACACACCTGTGAACTCGGCCTCTAATCAGTCTTaGAAGTTCACGATCAATTTCATAAAATACACATGG | + |
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Preference number: 6 (lower is better) Translates to: SNTPVNSASNQS*KFTINFIKYTW Trigger: CCATGTGTATTTTATGAAATTGATCGTGAACTTCCAAGACTGATTAGAGGCCGAGTTCACAGGTGTGTTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS CAA 72 bp | GTTAGGAAATTCAGGTGTTTGGAACTGTTTTTGTTGTaGAGCTCCCAAATTCACTGGACAAGAACTGAACTC | + |
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Preference number: 6 (lower is better) Translates to: VRKFRCLELFLL*SSQIHWTRTEL Trigger: GAGTTCAGTTCTTGTCCAGTGAATTTGGGAGCTCAACAACAAAAACAGTTCCAAACACCTGAATTTCCTAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS TCA 72 bp | TTAGGAAATTCAGGTGTTTGGAACTGTTTTTGTTGTTaGGCTCCCAAATTCACTGGACAAGAACTGAACTCA | + |
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Preference number: 6 (lower is better) Translates to: LGNSGVWNCFCC*APKFTGQELNS Trigger: TGAGTTCAGTTCTTGTCCAGTGAATTTGGGAGCTCAACAACAAAAACAGTTCCAAACACCTGAATTTCCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS CAA 90 bp | TTTAGTATGATACTTCATCTCAGCATCTGCAATTGTAACAAATGCTaGGAAAGTCTTTTGTTCAGAAGCAGATGCTGGTCTGACAGAAAC | + |
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Preference number: 6 (lower is better) Translates to: FSMILHLSICNCNKC*ESLLFRSRCWSDRN Trigger: GTTTCTGTCAGACCAGCATCTGCTTCTGAACAAAAGACTTTCCAAGCATTTGTTACAATTGCAGATGCTGAGATGAAGTATCATACTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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| CDS GCA 72 bp | CAATATTTCAAAAAGAAGTACAGTTTTCTGCACATGTaGTCGCCAATACTTCATACTTTCAATAACTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: QYFKKKYSFLHM*SPILHTFNNCR Trigger: TCTGCAGTTATTGAAAGTATGAAGTATTGGCGAGCACATGTGCAGAAAACTGTACTTCTTTTTGAAATATTG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092926.11 |
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