Pregenerated sensors for SPATA17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026611Ensembl transcript IDs: ENSMUST00000027908.13, ENSMUST00000110945.4, ENSMUST00000183819.8, ENSMUST00000183931.8, ENSMUST00000183996.8, ENSMUST00000184543.2
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATTGGGAGGGGGAGAGGAGGAGGGAGGGGAGGACAGAGAAAGAGATaGAGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTC | + |
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Preference number: 1 (lower is better) Translates to: IGRGRGGGRGGQRKR*SSLVGVHQGQRTEV Trigger: GACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCTCCATCTCTTTCTCTGTCCTCCCCTCCCTCCTCCTCTCCCCCTCCCAAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| 3UTR CCA 90 bp | AGATTGTTCCTCGGCTGTGGAGGTAGAGTCTGGAACTCTGAGCAGTaGCATCTTCCATTTCATGCTCACTTCATCTTATCCTCATTTCCA | + |
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Preference number: 1 (lower is better) Translates to: RLFLGCGGRVWNSEQ*HLPFHAHFILSSFP Trigger: TGGAAATGAGGATAAGATGAAGTGAGCATGAAATGGAAGATGCCACTGCTCAGAGTTCCAGACTCTACCTCCACAGCCGAGGAACAATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| 3UTR TCA 90 bp | GGCGAGAACATCTTTAAAGGAAGGGAAAGGGAAAGGTCAGTGTGGTaGAAAGTTGTAGGAATTGTGGGAAGTTGTTGGAATTGTGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: GENIFKGRERERSVW*KVVGIVGSCWNCGK Trigger: CTTCCCACAATTCCAACAACTTCCCACAATTCCTACAACTTTTCACCACACTGACCTTTCCCTTTCCCTTCCTTTAAAGATGTTCTCGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| 3UTR-3UTR CCA 90 bp | GGGAGGACAGAGAAAGAGATGGAGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGTGGAACTCTGAGCAGTaGCATCTTCCATTTCATGCT | + |
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Preference number: 2 (lower is better) Translates to: GRTEKEMELARRSAPRSKWNSEQ*HLPFHA Trigger: AGCATGAAATGGAAGATGCCACTGCTCAGAGTTCCA...CTTTGACCTTGGTGCACTCCTACGAGCGAGCTCCATCTCTTTCTCTGTCCTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| 3UTR CAA 90 bp | AAGGGAAAGGTCAGTGTGGTGAAAAGTTGTAGGAATTGTGGGAAGTaGTTGGAATTGTGGGAAGTTGTTGGAACTGCCCTTTGGCATGAG | + |
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Preference number: 2 (lower is better) Translates to: KGKVSVVKSCRNCGK*LELWEVVGTALWHE Trigger: CTCATGCCAAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTCCTACAACTTTTCACCACACTGACCTTTCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| 3UTR-3UTR TCA 90 bp | GAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTTGTTGGAACTGCCCTTTGGCAAGAAAATCCTGTTGGTaGGCTTTTCTTGAGCATAAT | + |
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Preference number: 2 (lower is better) Translates to: ELWEVVGIVGSCWNCPLARKSCW*AFLEHN Trigger: ATTATGCTCAAGAAAAGCTCACCAACAGGATTTTCT...TGCCAAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| 3UTR-3UTR TCA 90 bp | AAGGTCAGTGTGGTGAAAAGTTGTAGGAATTGTGGGAAGTTGTTGGAATTGTGGAGAAAATCCTGTTGGTaGGCTTTTCTTGAGCATAAT | + |
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Preference number: 2 (lower is better) Translates to: KVSVVKSCRNCGKLLELWRKSCW*AFLEHN Trigger: ATTATGCTCAAGAAAAGCTCACCAACAGGATTTTCT...CCACAATTCCAACAACTTCCCACAATTCCTACAACTTTTCACCACACTGACCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| 3UTR GCA 72 bp | CCTGTTGGTGAGCTTTTCTTGAGCATAATGTCAGGCTaGGGTGGGATGACCACACTGAAGAGCAAAGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: PVGELFLSIMSG*GGMTTLKSKGR Trigger: CCTTCCTTTGCTCTTCAGTGTGGTCATCCCACCGCAGCCTGACATTATGCTCAAGAAAAGCTCACCAACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| 3UTR CCA 72 bp | AGGTCAAGATTGTTCCTCGGCTGTGGAGGTAGAGTCTaGAACTCTGAGCAGTGGCATCTTCCATTTCATGCT | + |
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Preference number: 3 (lower is better) Translates to: RSRLFLGCGGRV*NSEQWHLPFHA Trigger: AGCATGAAATGGAAGATGCCACTGCTCAGAGTTCCAGACTCTACCTCCACAGCCGAGGAACAATCTTGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| 3UTR-3UTR CAA 90 bp | GGAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTTGTTGGAACTGCCCTTTGGCGTTGGTGAGCTTTTCTaGAGCATAATGTCAGGCTGC | + |
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Preference number: 3 (lower is better) Translates to: GIVGSCWNCGKLLELPFGVGELF*SIMSGC Trigger: GCAGCCTGACATTATGCTCAAGAAAAGCTCACCAAC...GCCAAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| 3UTR CCA 72 bp | AAAAGTTGTAGGAATTGTGGGAAGTTGTTGGAATTGTaGGAAGTTGTTGGAACTGCCCTTTGGCATGAGAGC | + |
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Preference number: 3 (lower is better) Translates to: KSCRNCGKLLEL*EVVGTALWHES Trigger: GCTCTCATGCCAAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTCCTACAACTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| CDS-3UTR GCA 90 bp | GAGATGGAGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATGTGGTTGATGGGTTCTaGCACCCTCAGGGTAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: EMELARRSAPRSKDRGQDVVDGF*HPQGRL Trigger: GAGCCTACCCTGAGGGTGGCAGAACCCATCAACCAC...ATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCTCCATCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR TCA 90 bp | AGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCCAGACGAAGGTGGTTaGTGGGTTCTGCCACCCTCA | + |
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Preference number: 4 (lower is better) Translates to: SSLVGVHQGQRTEVKIVPPDEGG*WVLPPS Trigger: TGAGGGTGGCAGAACCCATCAACCACCTTCGTCTGG...AGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR TCA 90 bp | GCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTGCAGTGTACTTCTGGTaGCCCAAAGGCTTTGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: ARRSAPRSKDRGQDCSSAAVYFW*PKGFAF Trigger: GAAGGCAAAGCCTTTGGGTCACCAGAAGTACACTGC...AGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTGTGGAGGTGACCCAAAGGCTTTaGCTTCTGCAACCGCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: RSAPRSKDRGQDCSSAVEVTQRL*LLQPQF Trigger: GAACTGCGGTTGCAGAAGGCAAAGCCTTTGGGTCAC...CTCCACAGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR GCA 90 bp | GGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTGTGGAGGGGCTTTGGGAGGTCTTaGCCTTTTCTGCAGTGTACT | + |
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Preference number: 4 (lower is better) Translates to: GVHQGQRTEVKIVPRLWRGFGRS*PFLQCT Trigger: AGTACACTGCAGAAAAGGGCAAGACCTCCCAAAGCC...CCTCCACAGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CCA 90 bp | CGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTGTGCAACCGCAGTTCCCATaGGTCAGGATGTTCTCGGAA | + |
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Preference number: 4 (lower is better) Translates to: RRSAPRSKDRGQDCSSAVQPQFP*VRMFSE Trigger: TTCCGAGAACATCCTGACCCATGGGAACTGCGGTTG...CACAGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR TCA 90 bp | GAGATGGAGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATATCGTCTCTGAATCCTaGCAGCCATTTCATTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: EMELARRSAPRSKDRGQDIVSES*QPFHCR Trigger: TCTACAATGAAATGGCTGTCAGGATTCAGAGACGAT...ATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCTCCATCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR GCA 90 bp | CCTGTTGGTGAGCTTTTCTTGAGCATAATGTCAGGCTGCGGTGGGATGACCACATCTCTCTTTCATTTCTaGGAACTCCTCCAAAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: PVGELFLSIMSGCGGMTTSLFHF*ELLQSL Trigger: GAGGCTTTGGAGGAGTTCGCAGAAATGAAAGAGAGA...TGTGGTCATCCCACCGCAGCCTGACATTATGCTCAAGAAAAGCTCACCAACAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| 3UTR CAA 72 bp | GTAGGAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTaGTTGGAACTGCCCTTTGGCATGAGAGCAGGACTC | + |
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Preference number: 4 (lower is better) Translates to: VGIVGSCWNCGK*LELPFGMRAGL Trigger: GAGTCCTGCTCTCATGCCAAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTCCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| CDS-3UTR TCA 90 bp | GCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTCTTCTCCACCACTTTTaGATAATTGTCACTACTCTG | + |
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Preference number: 4 (lower is better) Translates to: ARRSAPRSKDRGQDCSSALLHHF*IIVTTL Trigger: CAGAGTAGTGACAATTATTCAAAAGTGGTGGAGAAG...AGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR GCA 90 bp | CGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTGTGGTTGGTAAAATTTTCTaGCTAAGTAGCTTCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: RRSAPRSKDRGQDCSSAVVGKIF*LSSFST Trigger: GGTGGAGAAGCTACTTAGGCAGAAAATTTTACCAAC...CACAGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CCA 90 bp | CGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTGTGCCCGAATTGCATCATTaGTTTCTGAAACAGCTCTTA | + |
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Preference number: 4 (lower is better) Translates to: RRSAPRSKDRGQDCSSAVPELHH*FLKQLL Trigger: TAAGAGCTGTTTCAGAAACCAATGATGCAATTCGGG...CACAGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR TCA 90 bp | GAAAATCCTGTTGGTGAGCTTTTCTTGAGCATAATGTCAGGCTGCGGTGGGATGATCGTCTCTGAATCCTaGCAGCCATTTCATTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: ENPVGELFLSIMSGCGGMIVSES*QPFHCR Trigger: TCTACAATGAAATGGCTGTCAGGATTCAGAGACGAT...CATCCCACCGCAGCCTGACATTATGCTCAAGAAAAGCTCACCAACAGGATTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| CDS-3UTR TCA 90 bp | GGAAAGGTCAGTGTGGTGAAAAGTTGTAGGAATTGTGGGAAGTTGTTGGAATTGCACACTGCTTTGTGCTaGGCAGGTAATGCATCTTGC | + |
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Preference number: 4 (lower is better) Translates to: GKVSVVKSCRNCGKLLELHTALC*AGNASC Trigger: GCAAGATGCATTACCTGCTCAGCACAAAGCAGTGTG...CAATTCCAACAACTTCCCACAATTCCTACAACTTTTCACCACACTGACCTTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184543.2 |
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| CDS-3UTR CCA 90 bp | TGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTGTGGAGGTAGAATGTCCTTCAACTCCTaGAGTTCACCAAAATTGTTA | + |
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Preference number: 4 (lower is better) Translates to: CTKVKGQRSRLFLGCGGRMSFNS*SSPKLL Trigger: TAACAATTTTGGTGAACTCCAGGAGTTGAAGGACAT...TCTACCTCCACAGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR GCA 90 bp | TGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTGTGGAGGTAGACATAGTATAATATGCTaGCTCAACAACAAGTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: CTKVKGQRSRLFLGCGGRHSIIC*LNNKLV Trigger: TACCAACTTGTTGTTGAGGCAGCATATTATACTATG...TCTACCTCCACAGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CCA 90 bp | TGGAGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTATGGTAGGAAGAAAATaGCAAAAACATCTTGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: WSSLVGVHQGQRTEVKIVMVGRK*QKHLVL Trigger: CAAGACAAGATGTTTTTGCCATTTTCTTCCTACCAT...AACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCTCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| 3UTR CAA 72 bp | GTGAAAAGTTGTAGGAATTGTGGGAAGTTGTTGGAATaGTGGGAAGTTGTTGGAACTGCCCTTTGGCATGAG | + |
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Preference number: 4 (lower is better) Translates to: VKSCRNCGKLLE*WEVVGTALWHE Trigger: CTCATGCCAAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTCCTACAACTTTTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| 3UTR CAA 72 bp | GTCAGTGTGGTGAAAAGTTGTAGGAATTGTGGGAAGTaGTTGGAATTGTGGGAAGTTGTTGGAACTGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: VSVVKSCRNCGK*LELWEVVGTAL Trigger: AAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTCCTACAACTTTTCACCACACTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| CDS-3UTR TCA 90 bp | AGGAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTTGTTGGAACTGCCCTTTGGCTTCTCCACCACTTTTaGATAATTGTCACTACTCTG | + |
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Preference number: 4 (lower is better) Translates to: RNCGKLLELWEVVGTALWLLHHF*IIVTTL Trigger: CAGAGTAGTGACAATTATTCAAAAGTGGTGGAGAAG...CCAAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| CDS-3UTR TCA 90 bp | GAGCAGTGGCATCTTCCATTTCATGCTCACTTCATCTTATCCTCATTTCCACATCGAGAAGAGTTGAAATaGAGGCAGAACAGTCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: EQWHLPFHAHFILSSFPHREELK*RQNSLE Trigger: TTCCAGACTGTTCTGCCTTCATTTCAACTCTTCTCG...ATGTGGAAATGAGGATAAGATGAAGTGAGCATGAAATGGAAGATGCCACTGCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR TCA 90 bp | AGTGTGGTGAAAAGTTGTAGGAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTTTATGCTGCTTTGTGCTaGGCAGGTAATGCATCTTGC | + |
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Preference number: 4 (lower is better) Translates to: SVVKSCRNCGKLLELWEVYAALC*AGNASC Trigger: GCAAGATGCATTACCTGCTCAGCACAAAGCAGCATA...AACTTCCCACAATTCCAACAACTTCCCACAATTCCTACAACTTTTCACCACACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| CDS-3UTR GCA 90 bp | GAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTTGTTGGAACTGCCCTTTGGCAGTTGGTAAAATTTTCTaGCTAAGTAGCTTCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: ELWEVVGIVGSCWNCPLAVGKIF*LSSFST Trigger: GGTGGAGAAGCTACTTAGGCAGAAAATTTTACCAAC...TGCCAAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| CDS-3UTR GCA 90 bp | GTAGGAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTTGTTGGAACTGCCCTTTGCAGGTAATGCATCTTaGGGGCTTGGTAATCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: VGIVGSCWNCGKLLELPFAGNAS*GLGNLF Trigger: AAAAAGATTACCAAGCCCGCAAGATGCATTACCTGC...AAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTCCTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| CDS-3UTR CCA 90 bp | GAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTTGTTGGAACTGCCCTTTGGCACCCGAATTGCATCATTaGTTTCTGAAACAGCTCTTA | + |
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Preference number: 4 (lower is better) Translates to: ELWEVVGIVGSCWNCPLAPELHH*FLKQLL Trigger: TAAGAGCTGTTTCAGAAACCAATGATGCAATTCGGG...TGCCAAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| CDS-3UTR TCA 90 bp | GAGCAGTGGCATCTTCCATTTCATGCTCACTTCATCTTATCCTCATTTCCACATTACTTCGAGAAGAGTTaGAATGAAGGCAGAACAGTC | + |
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Preference number: 4 (lower is better) Translates to: EQWHLPFHAHFILSSFPHYFEKS*NEGRTV Trigger: GACTGTTCTGCCTTCATTTCAACTCTTCTCGAAGTA...ATGTGGAAATGAGGATAAGATGAAGTGAGCATGAAATGGAAGATGCCACTGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR GCA 90 bp | GGAAAGGTCAGTGTGGTGAAAAGTTGTAGGAATTGTGGGAAGTTGTTGGAATTGGCAGGTAATGCATCTTaGGGGCTTGGTAATCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: GKVSVVKSCRNCGKLLELAGNAS*GLGNLF Trigger: AAAAAGATTACCAAGCCCGCAAGATGCATTACCTGC...CAATTCCAACAACTTCCCACAATTCCTACAACTTTTCACCACACTGACCTTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| CDS-3UTR GCA 90 bp | GAGCAGTGGCATCTTCCATTTCATGCTCACTTCATCTTATCCTCATTTCCACATGCAGGTAATGCATCTTaGGGGCTTGGTAATCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: EQWHLPFHAHFILSSFPHAGNAS*GLGNLF Trigger: AAAAAGATTACCAAGCCCGCAAGATGCATTACCTGC...ATGTGGAAATGAGGATAAGATGAAGTGAGCATGAAATGGAAGATGCCACTGCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CCA 90 bp | AAGGTCAGTGTGGTGAAAAGTTGTAGGAATTGTGGGAAGTTGTTGGAATTGTGGATGTCCTTCAACTCCTaGAGTTCACCAAAATTGTTA | + |
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Preference number: 4 (lower is better) Translates to: KVSVVKSCRNCGKLLELWMSFNS*SSPKLL Trigger: TAACAATTTTGGTGAACTCCAGGAGTTGAAGGACAT...CCACAATTCCAACAACTTCCCACAATTCCTACAACTTTTCACCACACTGACCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| CDS-3UTR GCA 90 bp | AAAAGTTGTAGGAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTTGTTGGAACTCATAGTATAATATGCTaGCTCAACAACAAGTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: KSCRNCGKLLELWEVVGTHSIIC*LNNKLV Trigger: TACCAACTTGTTGTTGAGGCAGCATATTATACTATG...AGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTCCTACAACTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| CDS CCA 90 bp | CGCTTCCTGCTGATAGGTGGCAGACTCTCCGACTGCGGGAAGGAGTaGACACTGGTGCATGCCAGCCAGTTACTAGGGCTTTGGGAGGTC | + |
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Preference number: 5 (lower is better) Translates to: RFLLIGGRLSDCGKE*TLVHASQLLGLWEV Trigger: GACCTCCCAAAGCCCTAGTAACTGGCTGGCATGCACCAGTGTCCACTCCTTCCCGCAGTCGGAGAGTCTGCCACCTATCAGCAGGAAGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183931.8 ENSMUST00000183996.8 |
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| CDS CCA 90 bp | CGCATGCGTTCCTCTTGCTTGAATGCCTCTCTGGCCAGACGAAGGTaGTTGATGGGTTCTGCCACCCTCAGGGTAGGCTCCAAAGGCTTA | + |
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Preference number: 5 (lower is better) Translates to: RMRSSCLNASLARRR*LMGSATLRVGSKGL Trigger: TAAGCCTTTGGAGCCTACCCTGAGGGTGGCAGAACCCATCAACCACCTTCGTCTGGCCAGAGAGGCATTCAAGCAAGAGGAACGCATGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183996.8 |
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| CDS GCA 90 bp | GGTCTTGCCCTTTTCTGCAGTGTACTTCTGGTGACCCAAAGGCTTTaGCTTCTGCAACCGCAGTTCCCATGGGTCAGGATGTTCTCGGAA | + |
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Preference number: 5 (lower is better) Translates to: GLALFCSVLLVTQRL*LLQPQFPWVRMFSE Trigger: TTCCGAGAACATCCTGACCCATGGGAACTGCGGTTGCAGAAGGCAAAGCCTTTGGGTCACCAGAAGTACACTGCAGAAAAGGGCAAGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183931.8 ENSMUST00000183996.8 |
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| CDS-3UTR CAA 90 bp | TGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTGTGGAGGTAGAGGTGACCCAAAGGCTTaGCCTTCTGCAACCGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: CTKVKGQRSRLFLGCGGRGDPKA*PSATAV Trigger: AACTGCGGTTGCAGAAGGCAAAGCCTTTGGGTCACC...TCTACCTCCACAGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CAA 90 bp | AGATGGAGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTATGCGTTCCTCTTGCTaGAATGCCTCTCTGGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: RWSSLVGVHQGQRTEVKIMRSSC*NASLAR Trigger: TCTGGCCAGAGAGGCATTCAAGCAAGAGGAACGCAT...AATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCTCCATCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CAA 90 bp | GGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTCGGCTGTGGAGGCCACTTCTTAGAGTCTaGACTGCGAAAGTGCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: GVHQGQRTEVKIVPRLWRPLLRV*TAKVLL Trigger: CAGAAGCACTTTCGCAGTCAAGACTCTAAGAAGTGG...CCTCCACAGCCGAGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS GCA 90 bp | AATGGCAAAAACATCTTGTCTTGCACGTTGCGCATGCGTTCCTCTTaGTTGAATGCCTCTCTGGCCAGACGAAGGTGGTTGATGGGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: NGKNILSCTLRMRSS*LNASLARRRWLMGS Trigger: AGAACCCATCAACCACCTTCGTCTGGCCAGAGAGGCATTCAAGCAAGAGGAACGCATGCGCAACGTGCAAGACAAGATGTTTTTGCCATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 |
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| CDS-3UTR CAA 90 bp | TGGAGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTGGCTTGGTAATCTTTTaGCTTCTCCTCTCGTTCCAG | + |
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Preference number: 5 (lower is better) Translates to: WSSLVGVHQGQRTEVKIVGLVIF*LLLSFQ Trigger: CTGGAACGAGAGGAGAAGCAAAAAGATTACCAAGCC...AACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CAA 90 bp | ATGGAGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTAATGGCAAAAACATCTaGTCTTGCACGTTGCGCATG | + |
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Preference number: 5 (lower is better) Translates to: MELARRSAPRSKDRGQDCNGKNI*SCTLRM Trigger: CATGCGCAACGTGCAAGACAAGATGTTTTTGCCATT...ACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCTCCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CAA 90 bp | AGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTCCTTCCCGAATTGCATCATaGGTTTCTGAAACAGCTCTT | + |
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Preference number: 5 (lower is better) Translates to: SSLVGVHQGQRTEVKIVPSRIAS*VSETAL Trigger: AAGAGCTGTTTCAGAAACCAATGATGCAATTCGGGA...AGGAACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CAA 90 bp | GGAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTTGTTGGAACTGCCCTTTGGCGGCTTGGTAATCTTTTaGCTTCTCCTCTCGTTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: GIVGSCWNCGKLLELPFGGLVIF*LLLSFQ Trigger: CTGGAACGAGAGGAGAAGCAAAAAGATTACCAAGCC...GCCAAAGGGCAGTTCCAACAACTTCCCACAATTCCAACAACTTCCCACAATTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| CDS-3UTR CAA 90 bp | AGATGGAGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTACAGTCTGGAAATCCTaGTCAGAGATCCACTTCTTA | + |
|
Preference number: 5 (lower is better) Translates to: RWSSLVGVHQGQRTEVKITVWKS*SEIHFL Trigger: TAAGAAGTGGATCTCTGACAAGGATTTCCAGACTGT...AATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCTCCATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CAA 90 bp | TGGAGCTCGCTCGTAGGAGTGCACCAAGGTCAAAGGACAGAGGTCAAGATTGTTTCTCGGAAAGGTGAATaGTATATACCTGAAATCTGC | + |
|
Preference number: 5 (lower is better) Translates to: WSSLVGVHQGQRTEVKIVSRKGE*YIPEIC Trigger: GCAGATTTCAGGTATATACAATTCACCTTTCCGAGA...AACAATCTTGACCTCTGTCCTTTGACCTTGGTGCACTCCTACGAGCGAGCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183819.8 |
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| CDS-3UTR CAA 90 bp | GAGAGCAGGACTCTGAACGTCCAGACTGTAACTAGCTGTAAGAAGGAATCAGCTTCCCGAATTGCATCATaGGTTTCTGAAACAGCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: ESRTLNVQTVTSCKKESASRIAS*VSETAL Trigger: AAGAGCTGTTTCAGAAACCAATGATGCAATTCGGGA...AGCTGATTCCTTCTTACAGCTAGTTACAGTCTGGACGTTCAGAGTCCTGCTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110945.4 |
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| CDS-3UTR CAA 90 bp | AGTGTGGTGAAAAGTTGTAGGAATTGTGGGAAGTTGTTGGAATTGTGGGAAGTTGGCTTGGTAATCTTTTaGCTTCTCCTCTCGTTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: SVVKSCRNCGKLLELWEVGLVIF*LLLSFQ Trigger: CTGGAACGAGAGGAGAAGCAAAAAGATTACCAAGCC...AACTTCCCACAATTCCAACAACTTCCCACAATTCCTACAACTTTTCACCACACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110945.4 ENSMUST00000184543.2 |
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| CDS TCA 90 bp | ATTTCTCCAGCTTTCGAATATAACTTTCCATACTTCGAGAAGAGTTaGAATGAAGGCAGAACAGTCTGGAAATCCTTGTCAGAGATCCAC | + |
|
Preference number: 5 (lower is better) Translates to: ISPAFEYNFPYFEKS*NEGRTVWKSLSEIH Trigger: GTGGATCTCTGACAAGGATTTCCAGACTGTTCTGCCTTCATTTCAACTCTTCTCGAAGTATGGAAAGTTATATTCGAAAGCTGGAGAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 |
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| CDS CCA 72 bp | CTGATAGGTGGCAGACTCTCCGACTGCGGGAAGGAGTaGACACTGGTGCATGCCAGCCAGTTACTAGGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: LIGGRLSDCGKE*TLVHASQLLGL Trigger: AAGCCCTAGTAACTGGCTGGCATGCACCAGTGTCCACTCCTTCCCGCAGTCGGAGAGTCTGCCACCTATCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183931.8 ENSMUST00000183996.8 |
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| CDS CCA 72 bp | TCCTCTTGCTTGAATGCCTCTCTGGCCAGACGAAGGTaGTTGATGGGTTCTGCCACCCTCAGGGTAGGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SSCLNASLARRR*LMGSATLRVGS Trigger: GGAGCCTACCCTGAGGGTGGCAGAACCCATCAACCACCTTCGTCTGGCCAGAGAGGCATTCAAGCAAGAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183996.8 |
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| CDS GCA 72 bp | TGCCTCTCTGGCCAGACGAAGGTGGTTGATGGGTTCTaGCACCCTCAGGGTAGGCTCCAAAGGCTTATAACG | + |
|
Preference number: 6 (lower is better) Translates to: CLSGQTKVVDGF*HPQGRLQRLIT Trigger: CGTTATAAGCCTTTGGAGCCTACCCTGAGGGTGGCAGAACCCATCAACCACCTTCGTCTGGCCAGAGAGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183996.8 |
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| CDS CCA 72 bp | TGTTCCAAGACTTCATTGATGTCTCGGAAGGGTCCCTaGCACCGCTTCCTGCTGATAGGTGGCAGACTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: CSKTSLMSRKGP*HRFLLIGGRLS Trigger: GGAGAGTCTGCCACCTATCAGCAGGAAGCGGTGCCAGGGACCCTTCCGAGACATCAATGAAGTCTTGGAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183996.8 |
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| CDS CAA 72 bp | TCTTGCTTGAATGCCTCTCTGGCCAGACGAAGGTGGTaGATGGGTTCTGCCACCCTCAGGGTAGGCTCCAAA | + |
|
Preference number: 6 (lower is better) Translates to: SCLNASLARRRW*MGSATLRVGSK Trigger: TTTGGAGCCTACCCTGAGGGTGGCAGAACCCATCAACCACCTTCGTCTGGCCAGAGAGGCATTCAAGCAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183996.8 |
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| CDS TCA 72 bp | GCTCCAAAGGCTTATAACGCTGTTCCAAGACTTCATTaGTGTCTCGGAAGGGTCCCTGGCACCGCTTCCTGC | + |
|
Preference number: 6 (lower is better) Translates to: APKAYNAVPRLH*CLGRVPGTASC Trigger: GCAGGAAGCGGTGCCAGGGACCCTTCCGAGACATCAATGAAGTCTTGGAACAGCGTTATAAGCCTTTGGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183996.8 |
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| CDS CAA 90 bp | AGGTCTTGCCCTTTTCTGCAGTGTACTTCTGGTGACCCAAAGGCTTaGCCTTCTGCAACCGCAGTTCCCATGGGTCAGGATGTTCTCGGA | + |
|
Preference number: 6 (lower is better) Translates to: RSCPFLQCTSGDPKA*PSATAVPMGQDVLG Trigger: TCCGAGAACATCCTGACCCATGGGAACTGCGGTTGCAGAAGGCAAAGCCTTTGGGTCACCAGAAGTACACTGCAGAAAAGGGCAAGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183931.8 ENSMUST00000183996.8 |
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| CDS CAA 90 bp | GGCAAAAACATCTTGTCTTGCACGTTGCGCATGCGTTCCTCTTGCTaGAATGCCTCTCTGGCCAGACGAAGGTGGTTGATGGGTTCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: GKNILSCTLRMRSSC*NASLARRRWLMGSA Trigger: GGCAGAACCCATCAACCACCTTCGTCTGGCCAGAGAGGCATTCAAGCAAGAGGAACGCATGCGCAACGTGCAAGACAAGATGTTTTTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 |
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| CDS GCA 72 bp | CTTTTCTGCAGTGTACTTCTGGTGACCCAAAGGCTTTaGCTTCTGCAACCGCAGTTCCCATGGGTCAGGATG | + |
|
Preference number: 6 (lower is better) Translates to: LFCSVLLVTQRL*LLQPQFPWVRM Trigger: CATCCTGACCCATGGGAACTGCGGTTGCAGAAGGCAAAGCCTTTGGGTCACCAGAAGTACACTGCAGAAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 ENSMUST00000183931.8 ENSMUST00000183996.8 |
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| CDS GCA 72 bp | AACATCTTGTCTTGCACGTTGCGCATGCGTTCCTCTTaGTTGAATGCCTCTCTGGCCAGACGAAGGTGGTTG | + |
|
Preference number: 6 (lower is better) Translates to: NILSCTLRMRSS*LNASLARRRWL Trigger: CAACCACCTTCGTCTGGCCAGAGAGGCATTCAAGCAAGAGGAACGCATGCGCAACGTGCAAGACAAGATGTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 |
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| CDS CAA 72 bp | ATCTTGTCTTGCACGTTGCGCATGCGTTCCTCTTGCTaGAATGCCTCTCTGGCCAGACGAAGGTGGTTGATG | + |
|
Preference number: 6 (lower is better) Translates to: ILSCTLRMRSSC*NASLARRRWLM Trigger: CATCAACCACCTTCGTCTGGCCAGAGAGGCATTCAAGCAAGAGGAACGCATGCGCAACGTGCAAGACAAGAT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 |
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| CDS CAA 90 bp | AATAATTGTCACTACTCTGTTCAAGTGCCTCATATAGGCCCGGACTaGGCACCCTCGGAACCAGCTCTGGATCATCACAGCTGCATCATT | + |
|
Preference number: 6 (lower is better) Translates to: NNCHYSVQVPHIGPD*APSEPALDHHSCII Trigger: AATGATGCAGCTGTGATGATCCAGAGCTGGTTCCGAGGGTGCCAAGTCCGGGCCTATATGAGGCACTTGAACAGAGTAGTGACAATTATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000110945.4 ENSMUST00000183819.8 |
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| CDS CAA 72 bp | GAGCAGGTAATGCATCTTGCGGGCTTGGTAATCTTTTaGCTTCTCCTCTCGTTCCAGGAGAACCTTTCTCTC | + |
|
Preference number: 6 (lower is better) Translates to: EQVMHLAGLVIF*LLLSFQENLSL Trigger: GAGAGAAAGGTTCTCCTGGAACGAGAGGAGAAGCAAAAAGATTACCAAGCCCGCAAGATGCATTACCTGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000027908.13 ENSMUST00000110945.4 ENSMUST00000183819.8 ENSMUST00000183931.8 ENSMUST00000183996.8 ENSMUST00000184543.2 |
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| CDS CAA 90 bp | CTTTGTGCTGAGCAGGTAATGCATCTTGCGGGCTTGGTAATCTTTTaGCTTCTCCTCTCGTTCCAGGAGAACCTTTCTCTCTTCTCTCTC | + |
|
Preference number: 6 (lower is better) Translates to: LCAEQVMHLAGLVIF*LLLSFQENLSLFSL Trigger: GAGAGAGAAGAGAGAAAGGTTCTCCTGGAACGAGAGGAGAAGCAAAAAGATTACCAAGCCCGCAAGATGCATTACCTGCTCAGCACAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000027908.13 ENSMUST00000110945.4 ENSMUST00000183819.8 ENSMUST00000183931.8 ENSMUST00000183996.8 ENSMUST00000184543.2 |
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| CDS GCA 72 bp | CAGGAGAACCTTTCTCTCTTCTCTCTCTTTCATTTCTaGGAACTCCTCCAAAGCCTCCCGGTTCCTAAAGTA | + |
|
Preference number: 6 (lower is better) Translates to: QENLSLFSLFHF*ELLQSLPVPKV Trigger: TACTTTAGGAACCGGGAGGCTTTGGAGGAGTTCGCAGAAATGAAAGAGAGAGAAGAGAGAAAGGTTCTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183931.8 |
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| CDS GCA 72 bp | CAGGAGAACCTTTCTCTCTTCTCTCTCTTTCATTTCTaGGAACTCCTCCAAAGCCTCCCGAATTGCATCATT | + |
|
Preference number: 6 (lower is better) Translates to: QENLSLFSLFHF*ELLQSLPNCII Trigger: AATGATGCAATTCGGGAGGCTTTGGAGGAGTTCGCAGAAATGAAAGAGAGAGAAGAGAGAAAGGTTCTCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000110945.4 ENSMUST00000183819.8 |
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| CDS CAA 72 bp | CTGGAAATCCTTGTCAGAGATCCACTTCTTAGAGTCTaGACTGCGAAAGTGCTTCTGTCCATAAGAGTCAGA | + |
|
Preference number: 6 (lower is better) Translates to: LEILVRDPLLRV*TAKVLLSIRVR Trigger: TCTGACTCTTATGGACAGAAGCACTTTCGCAGTCAAGACTCTAAGAAGTGGATCTCTGACAAGGATTTCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 |
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| CDS CCA 72 bp | CTGCGAACTCCTCCAAAGCCTCCCGAATTGCATCATTaGTTTCTGAAACAGCTCTTAAATATTCCTTCAAAT | + |
|
Preference number: 6 (lower is better) Translates to: LRTPPKPPELHH*FLKQLLNIPSN Trigger: ATTTGAAGGAATATTTAAGAGCTGTTTCAGAAACCAATGATGCAATTCGGGAGGCTTTGGAGGAGTTCGCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000110945.4 ENSMUST00000183819.8 |
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| CDS CAA 72 bp | TCTGCGAACTCCTCCAAAGCCTCCCGAATTGCATCATaGGTTTCTGAAACAGCTCTTAAATATTCCTTCAAA | + |
|
Preference number: 6 (lower is better) Translates to: SANSSKASRIAS*VSETALKYSFK Trigger: TTTGAAGGAATATTTAAGAGCTGTTTCAGAAACCAATGATGCAATTCGGGAGGCTTTGGAGGAGTTCGCAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000110945.4 ENSMUST00000183819.8 |
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| CDS TCA 72 bp | GTGCTTCTGTCCATAAGAGTCAGAATTATACGCACTTaGCGAGTGTATCATTGGGATGTACTTCTCCTTTTT | + |
|
Preference number: 6 (lower is better) Translates to: VLLSIRVRIIRT*RVYHWDVLLLF Trigger: AAAAAGGAGAAGTACATCCCAATGATACACTCGTCAAGTGCGTATAATTCTGACTCTTATGGACAGAAGCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 |
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| CDS CAA 72 bp | CTTTCATTTCTGCGAACTCCTCCAAAGCCTCCCGAATaGCATCATTGGTTTCTGAAACAGCTCTTAAATATT | + |
|
Preference number: 6 (lower is better) Translates to: LSFLRTPPKPPE*HHWFLKQLLNI Trigger: AATATTTAAGAGCTGTTTCAGAAACCAATGATGCAATTCGGGAGGCTTTGGAGGAGTTCGCAGAAATGAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027908.13 ENSMUST00000110945.4 ENSMUST00000183819.8 |
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| CDS CAA 72 bp | AGTGCTTCTGTCCATAAGAGTCAGAATTATACGCACTaGACGAGTGTATCATTGGGATGTACTTCTCCTTTT | + |
|
Preference number: 6 (lower is better) Translates to: SASVHKSQNYTH*TSVSLGCTSPF Trigger: AAAAGGAGAAGTACATCCCAATGATACACTCGTCAAGTGCGTATAATTCTGACTCTTATGGACAGAAGCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 |
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| CDS TCA 72 bp | GCTTTCGAATATAACTTTCCATACTTCGAGAAGAGTTaGAATGAAGGCAGAACAGTCTGGAAATCCTTGTCA | + |
|
Preference number: 6 (lower is better) Translates to: AFEYNFPYFEKS*NEGRTVWKSLS Trigger: TGACAAGGATTTCCAGACTGTTCTGCCTTCATTTCAACTCTTCTCGAAGTATGGAAAGTTATATTCGAAAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 |
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| CDS CAA 72 bp | AAGAGTCAGAATTATACGCACTTGACGAGTGTATCATaGGGATGTACTTCTCCTTTTTATGGTAGGAAGAAA | + |
|
Preference number: 6 (lower is better) Translates to: KSQNYTHLTSVS*GCTSPFYGRKK Trigger: TTTCTTCCTACCATAAAAAGGAGAAGTACATCCCAATGATACACTCGTCAAGTGCGTATAATTCTGACTCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027908.13 ENSMUST00000183819.8 |
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