Pregenerated sensors for SPATA16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039335Ensembl transcript IDs: ENSMUST00000047005.11, ENSMUST00000108305.2
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AACATTTATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTaGCCAAGAGGGTGCCATCTGAGGCCTTGGGTGACAGCCTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: NIYCYQLKVMKCRLS*PRGCHLRPWVTAFV Trigger: AACAAAGGCTGTCACCCAAGGCCTCAGATGGCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATAAATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| 3UTR CCA 72 bp | AGACTGTCTTTGCCAAGAGGGTGCCATCTGAGGCCTTaGGTGACAGCCTTTGTTACCCAGAGGCTACAGACC | + |
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Preference number: 3 (lower is better) Translates to: RLSLPRGCHLRP*VTAFVTQRLQT Trigger: GGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAGATGGCACCCTCTTGGCAAAGACAGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | GTGCCATCTGAGGCCTTGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCCTCTCTGCAGCCGGCTaGGGAGGCTGGCATAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: VPSEALGDSLCYPEATDPLSAAG*GGWHSA Trigger: TGCACTATGCCAGCCTCCTCAGCCGGCTGCAGAGAG...GGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAGATGGCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | GTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCCGGGGACTTGCAGGTaGCATCGTGGTGGCAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: VTQRLQTPTSPDTSGSLLPGTCR*HRGGSL Trigger: CAGACTGCCACCACGATGCCACCTGCAAGTCCCCGG...AAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | CTGAGGCCTTGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTGCTCAAGTGCTGTCCTaGACTGTCCTGCTGCCACGG | + |
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Preference number: 4 (lower is better) Translates to: LRPWVTAFVTQRLQTPTSAQVLS*TVLLPR Trigger: CCGTGGCAGCAGGACAGTTCAGGACAGCACTTGAGC...AGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | CTGAGGCCTTGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTGACCAGTCGGCTGTCTaGGGCAGTACATGGAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: LRPWVTAFVTQRLQTPTSDQSAV*GSTWSP Trigger: AGGACTCCATGTACTGCCGCAGACAGCCGACTGGTC...AGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | CTGAGGCCTTGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTTGTTCCTTCACTCTCTaGAGCCGGCTGAGGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LRPWVTAFVTQRLQTPTSCSFTL*SRLRRL Trigger: CAGCCTCCTCAGCCGGCTGCAGAGAGTGAAGGAACA...AGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | CCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCCTATCCCTTCCAGGCTGCTaGGGGAATTTGTCAAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: PRGYRPQLLQTLQAACFLSLPGC*GNLSRW Trigger: CCACCTTGACAAATTCCCCCAGCAGCCTGGAAGGGA...TAGGAAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | GCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCGTCTGGCCTGTTGCCTaGAGCCCAAGGCACATGTTA | + |
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Preference number: 4 (lower is better) Translates to: AFVTQRLQTPTSPDTSGSVWPVA*SPRHML Trigger: TAACATGTGCCTTGGGCTTCAGGCAACAGGCCAGAC...GCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | GTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTGTGTCCCTTCCAGGCTaGTGGGGGAATTTGTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: VTQRLQTPTSPDTSGSLLVSLPG*WGNLSR Trigger: CCTTGACAAATTCCCCCAGCAGCCTGGAAGGGACAC...AAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | CTGAGGCCTTGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCTTCTCCATCACACCTaGGCAGGCATGGAAATTCCC | + |
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Preference number: 4 (lower is better) Translates to: LRPWVTAFVTQRLQTPTSLLHHT*AGMEIP Trigger: GGGAATTTCCATGCCTGCTCAGGTGTGATGGAGAAG...AGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | TTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCCTGCCTCCTGTTGACTaGTGTCCTGGAGATAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: LPRGYRPQLLQTLQAACFLPPVD*CPGDKG Trigger: TCCCTTATCTCCAGGACATCAGTCAACAGGAGGCAG...GAAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | GTGCCATCTGAGGCCTTGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCTGTCCTGAACTGTCCTaGTGCCACGGCATATTTCTT | + |
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Preference number: 4 (lower is better) Translates to: VPSEALGDSLCYPEATDPCPELS*CHGIFL Trigger: AAGAAATATGCCGTGGCAGCAGGACAGTTCAGGACA...GGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAGATGGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | GCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCGAGCTGCTCCTTTGCTaGAAAGCTCAAGTGCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: AFVTQRLQTPTSPDTSGSELLLC*KAQVLS Trigger: GGACAGCACTTGAGCTTTGCAGCAAAGGAGCAGCTC...GCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | GTGCCATCTGAGGCCTTGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCGACTGTTGCCAGCTCTaGCATTGCTTGATTGATCAC | + |
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Preference number: 4 (lower is better) Translates to: VPSEALGDSLCYPEATDPDCCQL*HCLIDH Trigger: GTGATCAATCAAGCAATGGCAGAGCTGGCAACAGTC...GGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAGATGGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | CTGAGGCCTTGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTTTCTTTAAGGGGATGTaGGGCAGAGGTACGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: LRPWVTAFVTQRLQTPTSFFKGM*GRGTVV Trigger: CACCACCGTACCTCTGCCCCACATCCCCTTAAAGAA...AGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | AGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCCTAGTGCCATTTGTCAATCTGTaGCAGGGTGGTGAGATCCCG | + |
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Preference number: 4 (lower is better) Translates to: RGYRPQLLQTLQAACFLVPFVNL*QGGEIP Trigger: CGGGATCTCACCACCCTGCCACAGATTGACAAATGG...CACTAGGAAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | TTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCCTAAACACGGCTGCCTaGCGAAGATGGTTTCGGAAA | + |
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Preference number: 4 (lower is better) Translates to: LPRGYRPQLLQTLQAACFLNTAA*RRWFRK Trigger: TTTCCGAAACCATCTTCGTCAGGCAGCCGTGTTTAG...GAAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | CCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCCTAGCTGAGGCTTCAGCTTaGATTTCTCCACTGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: PRGYRPQLLQTLQAACFLAEASA*ISPLFF Trigger: GAAGAACAGTGGAGAAATGCAAGCTGAAGCCTCAGC...TAGGAAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | TGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTGCTGCAAAGCTCAAGTaGTGTCCTGAACTGTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: WVTAFVTQRLQTPTSPDTAAKLK*CPELSC Trigger: GCAGGACAGTTCAGGACAGCACTTGAGCTTTGCAGC...AGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | CCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCGAGATAAGGGACTGTTaGCAGCTCTGCCATTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: PLLPRGYRPQLLQTLQAAEIRDC*QLCHCL Trigger: CAAGCAATGGCAGAGCTGGCAACAGTCCCTTATCTC...GGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | GGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCGTCTGCGGCAGTACATaGAGTCCTTGGGTATCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GDSLCYPEATDPNFSRHFVCGST*SPWVSV Trigger: CACAGATACCCAAGGACTCCATGTACTGCCGCAGAC...GAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | CCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCGTCAGCAGATATTGCTaGGGAGGAAAACACGACCAG | + |
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Preference number: 4 (lower is better) Translates to: PLLPRGYRPQLLQTLQAAVSRYC*GGKHDQ Trigger: CTGGTCGTGTTTTCCTCCCCAGCAATATCTGCTGAC...GGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | GTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCACCAGAGCTGCTCCTTTaGTGCAAAGCTCAAGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VTAFVTQRLQTPTSPDTSPELLL*CKAQVL Trigger: CAGCACTTGAGCTTTGCAGCAAAGGAGCAGCTCTGG...TGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | AGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCCTAGTGTATGTTCTGTGTAGGTaGGGAGCTTCCTACTGGACA | + |
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Preference number: 4 (lower is better) Translates to: RGYRPQLLQTLQAACFLVYVLCR*GASYWT Trigger: TGTCCAGTAGGAAGCTCCCCACCTACACAGAACATA...CACTAGGAAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | CCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTCACTGTATCTTCTCTaGTCAGTGGAGAGAAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: PLLPRGYRPQLLQTLQAASLYLL*SVERRE Trigger: CTCCCTTCTCTCCACTGACCAGAGAAGATACAGTGA...GGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | CCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCACGGTGGTGACTAGCTaGTTGTCTAGTTCCATTATC | + |
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Preference number: 4 (lower is better) Translates to: PLLPRGYRPQLLQTLQAATVVTS*LSSSII Trigger: GATAATGGAACTAGACAATCAGCTAGTCACCACCGT...GGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | CCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCCGAGCTTTGTCTCAATaGAACTTGCGATGCTTGCTA | + |
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Preference number: 4 (lower is better) Translates to: PLLPRGYRPQLLQTLQAARALSQ*NLRCLL Trigger: TAGCAAGCATCGCAAGTTTCATTGAGACAAAGCTCG...GGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | CCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCGTCTATAGCAAGAGCTaGCATCCTTTAAGGCTACCT | + |
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Preference number: 4 (lower is better) Translates to: PLLPRGYRPQLLQTLQAAVYSKS*HPLRLP Trigger: AGGTAGCCTTAAAGGATGCCAGCTCTTGCTATAGAC...GGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | TTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCATCTTCTCTGGTCAGTaGAGAGAAGGGAGTTTTATG | + |
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Preference number: 4 (lower is better) Translates to: LPRGYRPQLLQTLQAACFIFSGQ*REGSFM Trigger: CATAAAACTCCCTTCTCTCCACTGACCAGAGAAGAT...GAAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | GGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCCTAGTTCCATTATCTTaGCCTCTTTCTTTCCCACCA | + |
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Preference number: 4 (lower is better) Translates to: GDSLCYPEATDPNFSRHFLVPLS*PLSFPP Trigger: TGGTGGGAAAGAAAGAGGCCAAGATAATGGAACTAG...GAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| 3UTR CAA 72 bp | TGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTaGCCAAGAGGGTGCCATCTGAGGCCTTGGGTGACA | + |
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Preference number: 4 (lower is better) Translates to: CYQLKVMKCRLS*PRGCHLRPWVT Trigger: TGTCACCCAAGGCCTCAGATGGCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | GTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAAGGCTTGATTCTTGTTaGAAAGGGCGTGTACATAAC | + |
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Preference number: 4 (lower is better) Translates to: VTAFVTQRLQTPTSPDTSRLDSC*KGRVHN Trigger: GTTATGTACACGCCCTTTGCAACAAGAATCAAGCCT...TGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | GTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCATGGGGAGCTTCCTACTaGACACTTTTTCCAAGAATT | + |
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Preference number: 4 (lower is better) Translates to: VTAFVTQRLQTPTSPDTSWGASY*TLFPRI Trigger: AATTCTTGGAAAAAGTGTCCAGTAGGAAGCTCCCCA...TGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | TATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTGCCTGCCATTGCTTGATTaGTCACCTGGGCCTGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: YCYQLKVMKCRLSLPRGCLPLLD*SPGPVP Trigger: AGGAACAGGCCCAGGTGATCAATCAAGCAATGGCAG...GCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | TTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCGCTTGTATTTATCTTTaGAAGAAGCAGATCTCGATA | + |
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Preference number: 4 (lower is better) Translates to: LPRGYRPQLLQTLQAACFACIYL*KKQISI Trigger: TATCGAGATCTGCTTCTTCCAAAGATAAATACAAGC...GAAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | TATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTGCCCTGAACTGTCCTGCTaGCACGGCATATTTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: YCYQLKVMKCRLSLPRGCPELSC*HGIFLL Trigger: CAGAAGAAATATGCCGTGGCAGCAGGACAGTTCAGG...GCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | TATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTGCTCTGCCATTAGCGACTaGAGCAATTCTGCCTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: YCYQLKVMKCRLSLPRGCSAISD*SNSASC Trigger: ACAGGAGGCAGAATTGCTGCAGTCGCTAATGGCAGA...GCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | TATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTGCCTATGTTCTCAGGCTTaGTTCTTGTTGCAAAGGGCG | + |
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Preference number: 4 (lower is better) Translates to: YCYQLKVMKCRLSLPRGCLCSQA*FLLQRA Trigger: CGCCCTTTGCAACAAGAATCAAGCCTGAGAACATAG...GCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | ATTTATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTGCCAGCTCTGCCATTaGTTGATTGATCACCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: IYCYQLKVMKCRLSLPRGCQLCH*LIDHLG Trigger: GCCCAGGTGATCAATCAAGCAATGGCAGAGCTGGCA...CCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CCA 90 bp | TATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTGCACACCTGAGCAGGCATaGAAATTCCCATTCAGTTGT | + |
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Preference number: 4 (lower is better) Translates to: YCYQLKVMKCRLSLPRGCTPEQA*KFPFSC Trigger: ACAACTGAATGGGAATTTCCATGCCTGCTCAGGTGT...GCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | ATTTATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTATGTCTTCAGCGTGTaGTTCAAAGGGTTTCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: IYCYQLKVMKCRLSLPRGYVFSV*FKGFPQ Trigger: CTGGGGAAACCCTTTGAAGCACACGCTGAAGACATA...CCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR GCA 90 bp | TATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTGCTGTCTCAATGAAACTTaGGATGCTTGCTATGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: YCYQLKVMKCRLSLPRGCCLNET*DACYVF Trigger: GAAGACATAGCAAGCATCGCAAGTTTCATTGAGACA...GCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | ATTTATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGCGTCTTCTTTGTTTTTaGACCCAAGTGTCAGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: IYCYQLKVMKCRLSLPRGRLLCF*TQVSAD Trigger: ATCTGCTGACACTTGGGTTCAAAAACAAAGAAGACG...CCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR TCA 90 bp | TATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTGCTTTTGCTGTACAGTTTaGAGTCTCTTCATCTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: YCYQLKVMKCRLSLPRGCFCCTV*SLFIFV Trigger: GACAAAGATGAAGAGACTTCAAACTGTACAGCAAAA...GCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS GCA 90 bp | AAGCCATTTGTCAATCTGTGGCAGGGTGGTGAGATCCCGGGGACTTaGAGGTGGCATCGTGGTGGCAGTCTGGCCTGTTGCCTGAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: KPFVNLWQGGEIPGT*RWHRGGSLACCLKP Trigger: GGGCTTCAGGCAACAGGCCAGACTGCCACCACGATGCCACCTGCAAGTCCCCGGGATCTCACCACCCTGCCACAGATTGACAAATGGCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS CCA 90 bp | TTTGTCAATCTGTGGCAGGGTGGTGAGATCCCGGGGACTTGCAGGTaGCATCGTGGTGGCAGTCTGGCCTGTTGCCTGAAGCCCAAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: FVNLWQGGEIPGTCR*HRGGSLACCLKPKA Trigger: TGCCTTGGGCTTCAGGCAACAGGCCAGACTGCCACCACGATGCCACCTGCAAGTCCCCGGGATCTCACCACCCTGCCACAGATTGACAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS TCA 90 bp | CCTTTAAGGCTACCTGAAGCCATTTGTCAATCTGTGGCAGGGTGGTaGGATCCCGGGGACTTGCAGGTGGCATCGTGGTGGCAGTCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: PLRLPEAICQSVAGW*DPGDLQVASWWQSG Trigger: GCCAGACTGCCACCACGATGCCACCTGCAAGTCCCCGGGATCTCACCACCCTGCCACAGATTGACAAATGGCTTCAGGTAGCCTTAAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS-3UTR CAA 90 bp | GTGCCATCTGAGGCCTTGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCGCCTGCCAATACAGTTaGATGAGCTTGCTTACAGAG | + |
|
Preference number: 5 (lower is better) Translates to: VPSEALGDSLCYPEATDPACQYS*MSLLTE Trigger: CTCTGTAAGCAAGCTCATCAAACTGTATTGGCAGGC...GGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAGATGGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CAA 90 bp | CCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCGGAGATAAGGGACTGTaGCCAGCTCTGCCATTGCTT | + |
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Preference number: 5 (lower is better) Translates to: PLLPRGYRPQLLQTLQAAGDKGL*PALPLL Trigger: AAGCAATGGCAGAGCTGGCAACAGTCCCTTATCTCC...GGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS TCA 90 bp | CAGCCGGCTGAGGAGGCTGGCATAGTGCAACTTCTCCATCACACCTaGGCAGGCATGGAAATTCCCATTCAGTTGTGTGCTCCGGATAAA | + |
|
Preference number: 5 (lower is better) Translates to: QPAEEAGIVQLLHHT*AGMEIPIQLCAPDK Trigger: TTTATCCGGAGCACACAACTGAATGGGAATTTCCATGCCTGCTCAGGTGTGATGGAGAAGTTGCACTATGCCAGCCTCCTCAGCCGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS-3UTR CAA 90 bp | GCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCGGCTGCTGGGGGAATTaGTCAAGGTGGACATTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: AFVTQRLQTPTSPDTSGSGCWGN*SRWTFS Trigger: AGAAAATGTCCACCTTGACAAATTCCCCCAGCAGCC...GCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CAA 90 bp | AGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCCTAGTGTACAGTTTGATGAGCTaGCTTACAGAGTGCTCGCTC | + |
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Preference number: 5 (lower is better) Translates to: RGYRPQLLQTLQAACFLVYSLMS*LTECSL Trigger: GAGCGAGCACTCTGTAAGCAAGCTCATCAAACTGTA...CACTAGGAAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS GCA 90 bp | AGCTGCTCCTTTGCTGCAAAGCTCAAGTGCTGTCCTGAACTGTCCTaGTGCCACGGCATATTTCTTCTGTCTATAGCAAGAGCTGGCATC | + |
|
Preference number: 5 (lower is better) Translates to: SCSFAAKLKCCPELS*CHGIFLLSIARAGI Trigger: GATGCCAGCTCTTGCTATAGACAGAAGAAATATGCCGTGGCAGCAGGACAGTTCAGGACAGCACTTGAGCTTTGCAGCAAAGGAGCAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS CCA 90 bp | TTCCCGTCTTCTTTGTTTTTGAACCCAAGTGTCAGCAGATATTGCTaGGGAGGAAAACACGACCAGTCGGCTGTCTGCGGCAGTACATGG | + |
|
Preference number: 5 (lower is better) Translates to: FPSSLFLNPSVSRYC*GGKHDQSAVCGSTW Trigger: CCATGTACTGCCGCAGACAGCCGACTGGTCGTGTTTTCCTCCCCAGCAATATCTGCTGACACTTGGGTTCAAAAACAAAGAAGACGGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS-3UTR CAA 90 bp | GTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTTCTAGTTCCATTATCTaGGCCTCTTTCTTTCCCACC | + |
|
Preference number: 5 (lower is better) Translates to: VTQRLQTPTSPDTSGSLLSSSII*ASFFPT Trigger: GGTGGGAAAGAAAGAGGCCAAGATAATGGAACTAGA...AAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS GCA 90 bp | TGCTCCTTTGCTGCAAAGCTCAAGTGCTGTCCTGAACTGTCCTGCTaGCACGGCATATTTCTTCTGTCTATAGCAAGAGCTGGCATCCTT | + |
|
Preference number: 5 (lower is better) Translates to: CSFAAKLKCCPELSC*HGIFLLSIARAGIL Trigger: AAGGATGCCAGCTCTTGCTATAGACAGAAGAAATATGCCGTGGCAGCAGGACAGTTCAGGACAGCACTTGAGCTTTGCAGCAAAGGAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS-3UTR CAA 90 bp | TGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTCCGTCTTCTTTGTTTTaGAACCCAAGTGTCAGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: WVTAFVTQRLQTPTSPDTPSSLF*NPSVSR Trigger: TCTGCTGACACTTGGGTTCAAAAACAAAGAAGACGG...AGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS TCA 90 bp | ATGTTCTTTAAGGGGATGTGGGGCAGAGGTACGGTGGTGACTAGCTaGTTGTCTAGTTCCATTATCTTGGCCTCTTTCTTTCCCACCAGC | + |
|
Preference number: 5 (lower is better) Translates to: MFFKGMWGRGTVVTS*LSSSIILASFFPTS Trigger: GCTGGTGGGAAAGAAAGAGGCCAAGATAATGGAACTAGACAATCAGCTAGTCACCACCGTACCTCTGCCCCACATCCCCTTAAAGAACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS-3UTR CAA 90 bp | CCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCTGCTTCCTATGCTTGTATTTATCTTaGGAAGAAGCAGATCTCGAT | + |
|
Preference number: 5 (lower is better) Translates to: PRGYRPQLLQTLQAACFLCLYLS*EEADLD Trigger: ATCGAGATCTGCTTCTTCCAAAGATAAATACAAGCA...TAGGAAGCAGGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CAA 90 bp | CCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTCCAGACACTTCAGGCAGCCAATTTCCCGTCTTCTTaGTTTTTGAACCCAAGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: PLLPRGYRPQLLQTLQAANFPSS*FLNPSV Trigger: GACACTTGGGTTCAAAAACAAAGAAGACGGGAAATT...GGCTGCCTGAAGTGTCTGGAGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS CCA 90 bp | ACTGTCCTGCTGCCACGGCATATTTCTTCTGTCTATAGCAAGAGCTaGCATCCTTTAAGGCTACCTGAAGCCATTTGTCAATCTGTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: TVLLPRHISSVYSKS*HPLRLPEAICQSVA Trigger: TGCCACAGATTGACAAATGGCTTCAGGTAGCCTTAAAGGATGCCAGCTCTTGCTATAGACAGAAGAAATATGCCGTGGCAGCAGGACAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS-3UTR CAA 90 bp | CTGAGGCCTTGGGTGACAGCCTTTGTTACCCAGAGGCTACAGACCCCAACTTCTGTTTTGCTGTACAGTTaGAAGTCTCTTCATCTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: LRPWVTAFVTQRLQTPTSVLLYS*KSLHLC Trigger: ACAAAGATGAAGAGACTTCAAACTGTACAGCAAAAC...AGAAGTTGGGGTCTGTAGCCTCTGGGTAACAAAGGCTGTCACCCAAGGCCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS GCA 90 bp | GAACACCTCTTTCACCTTTTCTATGTTCTCAGGCTTGATTCTTGTTaGAAAGGGCGTGTACATAACCGAGAAAGCTTCGGCCCTGGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: EHLFHLFYVLRLDSC*KGRVHNRESFGPGD Trigger: ATCACCAGGGCCGAAGCTTTCTCGGTTATGTACACGCCCTTTGCAACAAGAATCAAGCCTGAGAACATAGAAAAGGTGAAAGAGGTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS TCA 90 bp | CATCCATTATGTTCTTTAAGGGGATGTGGGGCAGAGGTACGGTGGTaGCTAGCTGATTGTCTAGTTCCATTATCTTGGCCTCTTTCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: HPLCSLRGCGAEVRW*LADCLVPLSWPLSF Trigger: GAAAGAAAGAGGCCAAGATAATGGAACTAGACAATCAGCTAGTCACCACCGTACCTCTGCCCCACATCCCCTTAAAGAACATAATGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS-3UTR CAA 90 bp | ATTTATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGCAGCTCTGCCATTGCTaGATTGATCACCTGGGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: IYCYQLKVMKCRLSLPRGQLCHC*IDHLGL Trigger: CAGGCCCAGGTGATCAATCAAGCAATGGCAGAGCTG...CCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS-3UTR CAA 90 bp | TATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTGCGAAGTCTCTTCATCTTaGTCTTCTGCCTTCGAGCGG | + |
|
Preference number: 5 (lower is better) Translates to: YCYQLKVMKCRLSLPRGCEVSSS*SSAFER Trigger: CCGCTCGAAGGCAGAAGACAAAGATGAAGAGACTTC...GCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS GCA 90 bp | TCCCTTCCAGGCTGCTGGGGGAATTTGTCAAGGTGGACATTTTCTTaGTTGTATTTATCTTTGGAAGAAGCAGATCTCGATAGACTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: SLPGCWGNLSRWTFS*LYLSLEEADLDRLS Trigger: AGAGAGTCTATCGAGATCTGCTTCTTCCAAAGATAAATACAAGCAAGAAAATGTCCACCTTGACAAATTCCCCCAGCAGCCTGGAAGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS-3UTR CAA 90 bp | TATTGCTACCAGTTGAAAGTAATGAAGTGTAGACTGTCTTTGCCAAGAGGGTGCTCTATGTTCTCAGGCTaGATTCTTGTTGCAAAGGGC | + |
|
Preference number: 5 (lower is better) Translates to: YCYQLKVMKCRLSLPRGCSMFSG*ILVAKG Trigger: GCCCTTTGCAACAAGAATCAAGCCTGAGAACATAGA...GCACCCTCTTGGCAAAGACAGTCTACACTTCATTACTTTCAACTGGTAGCAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047005.11 |
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| CDS CCA 72 bp | CTGTGGCAGGGTGGTGAGATCCCGGGGACTTGCAGGTaGCATCGTGGTGGCAGTCTGGCCTGTTGCCTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: LWQGGEIPGTCR*HRGGSLACCLK Trigger: CTTCAGGCAACAGGCCAGACTGCCACCACGATGCCACCTGCAAGTCCCCGGGATCTCACCACCCTGCCACAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS GCA 72 bp | GTCAATCTGTGGCAGGGTGGTGAGATCCCGGGGACTTaGAGGTGGCATCGTGGTGGCAGTCTGGCCTGTTGC | + |
|
Preference number: 6 (lower is better) Translates to: VNLWQGGEIPGT*RWHRGGSLACC Trigger: GCAACAGGCCAGACTGCCACCACGATGCCACCTGCAAGTCCCCGGGATCTCACCACCCTGCCACAGATTGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS TCA 72 bp | CTACCTGAAGCCATTTGTCAATCTGTGGCAGGGTGGTaGGATCCCGGGGACTTGCAGGTGGCATCGTGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: LPEAICQSVAGW*DPGDLQVASWW Trigger: CCACCACGATGCCACCTGCAAGTCCCCGGGATCTCACCACCCTGCCACAGATTGACAAATGGCTTCAGGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS TCA 72 bp | TCACCTGGGCCTGTTCCTTCACTCTCTGCAGCCGGCTaGGGAGGCTGGCATAGTGCAACTTCTCCATCACAC | + |
|
Preference number: 6 (lower is better) Translates to: SPGPVPSLSAAG*GGWHSATSPSH Trigger: GTGTGATGGAGAAGTTGCACTATGCCAGCCTCCTCAGCCGGCTGCAGAGAGTGAAGGAACAGGCCCAGGTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS GCA 72 bp | ACTTGCAGGTGGCATCGTGGTGGCAGTCTGGCCTGTTaGCTGAAGCCCAAGGCACATGTTAGGCTGGGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: TCRWHRGGSLAC*LKPKAHVRLGK Trigger: TTTGCCCAGCCTAACATGTGCCTTGGGCTTCAGGCAACAGGCCAGACTGCCACCACGATGCCACCTGCAAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS CAA 72 bp | CGACCAGTCGGCTGTCTGCGGCAGTACATGGAGTCCTaGGGTATCTGTGTAGATACAGTCCACGTAGGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: RPVGCLRQYMES*GICVDTVHVGG Trigger: CCCACCTACGTGGACTGTATCTACACAGATACCCAAGGACTCCATGTACTGCCGCAGACAGCCGACTGGTCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS CCA 72 bp | TCCCTCCACAGAGCCAGAACATGTAGTCCGCAATCATaGCACTCCGGGCAGCTTCTGAGTATCTCTCCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: SLHRARTCSPQS*HSGQLLSISPD Trigger: GTCTGGAGAGATACTCAGAAGCTGCCCGGAGTGCCATGATTGCGGACTACATGTTCTGGCTCTGTGGAGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS TCA 72 bp | GATAAGGGACTGTTGCCAGCTCTGCCATTGCTTGATTaGTCACCTGGGCCTGTTCCTTCACTCTCTGCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: DKGLLPALPLLD*SPGPVPSLSAA Trigger: GGCTGCAGAGAGTGAAGGAACAGGCCCAGGTGATCAATCAAGCAATGGCAGAGCTGGCAACAGTCCCTTATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS GCA 72 bp | GTCCTGGAGATAAGGGACTGTTGCCAGCTCTGCCATTaGTTGATTGATCACCTGGGCCTGTTCCTTCACTCT | + |
|
Preference number: 6 (lower is better) Translates to: VLEIRDCCQLCH*LIDHLGLFLHS Trigger: AGAGTGAAGGAACAGGCCCAGGTGATCAATCAAGCAATGGCAGAGCTGGCAACAGTCCCTTATCTCCAGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS CAA 72 bp | CTGGAGATAAGGGACTGTTGCCAGCTCTGCCATTGCTaGATTGATCACCTGGGCCTGTTCCTTCACTCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: LEIRDCCQLCHC*IDHLGLFLHSL Trigger: CAGAGAGTGAAGGAACAGGCCCAGGTGATCAATCAAGCAATGGCAGAGCTGGCAACAGTCCCTTATCTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS TCA 72 bp | GAGGAGGCTGGCATAGTGCAACTTCTCCATCACACCTaGGCAGGCATGGAAATTCCCATTCAGTTGTGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: EEAGIVQLLHHT*AGMEIPIQLCA Trigger: AGCACACAACTGAATGGGAATTTCCATGCCTGCTCAGGTGTGATGGAGAAGTTGCACTATGCCAGCCTCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS GCA 72 bp | GCTGCAAAGCTCAAGTGCTGTCCTGAACTGTCCTGCTaGCACGGCATATTTCTTCTGTCTATAGCAAGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: AAKLKCCPELSC*HGIFLLSIARA Trigger: AGCTCTTGCTATAGACAGAAGAAATATGCCGTGGCAGCAGGACAGTTCAGGACAGCACTTGAGCTTTGCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS CAA 72 bp | GTGATGGCTTCTTCAATCATGGCCTGCCAATACAGTTaGATGAGCTTGCTTACAGAGTGCTCGCTCCCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: VMASSIMACQYS*MSLLTECSLPP Trigger: TGGAGGGAGCGAGCACTCTGTAAGCAAGCTCATCAAACTGTATTGGCAGGCCATGATTGAAGAAGCCATCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS TCA 72 bp | TGTTCTTTAAGGGGATGTGGGGCAGAGGTACGGTGGTaGCTAGCTGATTGTCTAGTTCCATTATCTTGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: CSLRGCGAEVRW*LADCLVPLSWP Trigger: AGGCCAAGATAATGGAACTAGACAATCAGCTAGTCACCACCGTACCTCTGCCCCACATCCCCTTAAAGAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS GCA 72 bp | TTTGCTGCAAAGCTCAAGTGCTGTCCTGAACTGTCCTaGTGCCACGGCATATTTCTTCTGTCTATAGCAAGA | + |
|
Preference number: 6 (lower is better) Translates to: FAAKLKCCPELS*CHGIFLLSIAR Trigger: TCTTGCTATAGACAGAAGAAATATGCCGTGGCAGCAGGACAGTTCAGGACAGCACTTGAGCTTTGCAGCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS GCA 72 bp | TGTGACGAGCTTTGTCTCAATGAAACTTGCGATGCTTaGTATGTCTTCAGCGTGTGCTTCAAAGGGTTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: CDELCLNETCDA*YVFSVCFKGFP Trigger: GGGAAACCCTTTGAAGCACACGCTGAAGACATAGCAAGCATCGCAAGTTTCATTGAGACAAAGCTCGTCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS TCA 72 bp | TGTAGATACAGTCCACGTAGGTGGGGTGAGTTCTCATaGACACCTCTTTCACCTTTTCTATGTTCTCAGGCT | + |
|
Preference number: 6 (lower is better) Translates to: CRYSPRRWGEFS*TPLSPFLCSQA Trigger: AGCCTGAGAACATAGAAAAGGTGAAAGAGGTGTTCATGAGAACTCACCCCACCTACGTGGACTGTATCTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS GCA 72 bp | TTTCACCTTTTCTATGTTCTCAGGCTTGATTCTTGTTaGAAAGGGCGTGTACATAACCGAGAAAGCTTCGGC | + |
|
Preference number: 6 (lower is better) Translates to: FHLFYVLRLDSC*KGRVHNRESFG Trigger: GCCGAAGCTTTCTCGGTTATGTACACGCCCTTTGCAACAAGAATCAAGCCTGAGAACATAGAAAAGGTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS CCA 72 bp | TCAGTGGAGAGAAGGGAGTTTTATGTTCTGTGTAGGTaGGGAGCTTCCTACTGGACACTTTTTCCAAGAATT | + |
|
Preference number: 6 (lower is better) Translates to: SVERREFYVLCR*GASYWTLFPRI Trigger: AATTCTTGGAAAAAGTGTCCAGTAGGAAGCTCCCCACCTACACAGAACATAAAACTCCCTTCTCTCCACTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS CAA 90 bp | CTTCCAGGCTGCTGGGGGAATTTGTCAAGGTGGACATTTTCTTGCTaGTATTTATCTTTGGAAGAAGCAGATCTCGATAGACTCTCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: LPGCWGNLSRWTFSC*YLSLEEADLDRLSS Trigger: TGAAGAGAGTCTATCGAGATCTGCTTCTTCCAAAGATAAATACAAGCAAGAAAATGTCCACCTTGACAAATTCCCCCAGCAGCCTGGAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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| CDS CAA 72 bp | TGCTGGGGGAATTTGTCAAGGTGGACATTTTCTTGCTaGTATTTATCTTTGGAAGAAGCAGATCTCGATAGA | + |
|
Preference number: 6 (lower is better) Translates to: CWGNLSRWTFSC*YLSLEEADLDR Trigger: TCTATCGAGATCTGCTTCTTCCAAAGATAAATACAAGCAAGAAAATGTCCACCTTGACAAATTCCCCCAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047005.11 ENSMUST00000108305.2 |
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