Pregenerated sensors for SPATA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028188Ensembl transcript IDs: ENSMUST00000029839.11, ENSMUST00000093951.3, ENSMUST00000197980.5, ENSMUST00000200488.5
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGCAAGGACCTCCCTGTCTCTGACTCCCGAATGCTGGGGTCCAACTaGGCACCATCATGCTCAGCTTGTTTGTTTGTTGTTTTACCCAGG | + |
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Preference number: 1 (lower is better) Translates to: RKDLPVSDSRMLGSN*APSCSACLFVVLPR Trigger: CCTGGGTAAAACAACAAACAAACAAGCTGAGCATGATGGTGCGCAGTTGGACCCCAGCATTCGGGAGTCAGAGACAGGGAGGTCCTTGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR CCA 90 bp | CTCCGTGTGTGCCTGTGTGGGGTTATAGACAGGTACAGGTGTCTATaGAGACCAGAAGAGGGCAGCACATCTCCTGGATTGGAGATTGAG | + |
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Preference number: 1 (lower is better) Translates to: LRVCLCGVIDRYRCL*RPEEGSTSPGLEIE Trigger: CTCAATCTCCAATCCAGGAGATGTGCTGCCCTCTTCTGGTCTCCATAGACACCTGTACCTGTCTATAACCCCACACAGGCACACACGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR CCA 90 bp | AAATCCCAGAGAGGGTCTCAAGTAGGCACCACAAAGGCAGGGGGATaGAGGAGAGGGAGAATGAGAAAAGGAGAGAGAGAGAGAGAGAGA | + |
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Preference number: 1 (lower is better) Translates to: KSQRGSQVGTTKAGG*RRGRMRKGERERER Trigger: TCTCTCTCTCTCTCTCTCTCCTTTTCTCATTCTCCCTCTCCTCCATCCCCCTGCCTTTGTGGTGCCTACTTGAGACCCTCTCTGGGATTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR CCA 90 bp | TGTGACTTTCTTTTTGTGATGTCTTACGATGAGCAAAGTCAGATCTaGTCAGAATGTATTGCAGCCGCCAATGCTCCCTGTTCATCTGGC | + |
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Preference number: 1 (lower is better) Translates to: CDFLFVMSYDEQSQI*SECIAAANAPCSSG Trigger: GCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGACATCACAAAAAGAAAGTCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR CCA 90 bp | TGTGACTTTCTTTTTGTGATGTCTTACGATGAGCAAAGTCAGATCTaGTCAGAATGTATTGCAGCCGCCAATGCTCCCTACAATCAGACA | + |
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Preference number: 1 (lower is better) Translates to: CDFLFVMSYDEQSQI*SECIAAANAPYNQT Trigger: TGTCTGATTGTAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGACATCACAAAAAGAAAGTCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029839.11 |
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| 3UTR GCA 90 bp | GTAACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTaGTATAATTACACTGGGATCGCAGATGCCTGTGACTTTCTTTTT | + |
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Preference number: 1 (lower is better) Translates to: VTFDVAWSPKRIDKR*YNYTGIADACDFLF Trigger: AAAAAGAAAGTCACAGGCATCTGCGATCCCAGTGTAATTATAGCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGTTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR GCA 90 bp | AATATTTTGGTTATTTGCCACTTTGTGTACATGTGTATATGTAGGTaGACCCGTGTGTATGGGTGTGTGTACACATGTGCATGTGGAGAC | + |
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Preference number: 1 (lower is better) Translates to: NILVICHFVYMCICR*TRVYGCVYTCACGD Trigger: GTCTCCACATGCACATGTGTACACACACCCATACACACGGGTGCACCTACATATACACATGTACACAAAGTGGCAAATAACCAAAATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR TCA 90 bp | GCTATAATTACACTGGGATCGCAGATGCCTGTGACTTTCTTTTTGTaGTGTCTTACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTG | + |
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Preference number: 1 (lower is better) Translates to: AIITLGSQMPVTFFL*CLTMSKVRSGQNVL Trigger: CAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGACATCACAAAAAGAAAGTCACAGGCATCTGCGATCCCAGTGTAATTATAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR TCA 90 bp | TCTCCATGTATTTTCCAACAAACTTGGATTTCCAGGTTCATCCTTTaGCAAAGATACACTATCTGGTCTGTAGATTGTTCCATTAATCTC | + |
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Preference number: 1 (lower is better) Translates to: SPCIFQQTWISRFIL*QRYTIWSVDCSINL Trigger: GAGATTAATGGAACAATCTACAGACCAGATAGTGTATCTTTGTCAAAGGATGAACCTGGAAATCCAAGTTTGTTGGAAAATACATGGAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR CAA 90 bp | TACAGGTGTCTATGGAGACCAGAAGAGGGCAGCACATCTCCTGGATaGGAGATTGAGAGCAGCCTGATGTGGATGGTGGAAACCAAACTC | + |
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Preference number: 2 (lower is better) Translates to: YRCLWRPEEGSTSPG*EIESSLMWMVETKL Trigger: GAGTTTGGTTTCCACCATCCACATCAGGCTGCTCTCAATCTCCAATCCAGGAGATGTGCTGCCCTCTTCTGGTCTCCATAGACACCTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR CCA 90 bp | AATGAGAAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTACAGGTGTCTATaGAGACCAGAAGAGGGCAGC | + |
|
Preference number: 2 (lower is better) Translates to: NEKRRERERERERERERERYRCL*RPEEGS Trigger: GCTGCCCTCTTCTGGTCTCCATAGACACCTGTACCT...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTCTCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR GCA 90 bp | AGGTGCTATAATTACACTGGGATCGCAGATGCCTGTGACTTTCTTTTTGTGATGCTGGTCAGAATGTATTaGAGCCGCCAATGCTCCCTA | + |
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Preference number: 2 (lower is better) Translates to: RCYNYTGIADACDFLFVMLVRMY*SRQCSL Trigger: TAGGGAGCATTGGCGGCTGCAATACATTCTGACCAG...CATCACAAAAAGAAAGTCACAGGCATCTGCGATCCCAGTGTAATTATAGCACCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029839.11 |
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| 3UTR-3UTR GCA 90 bp | CAATACCCTGCAGCTGTAATGGATACTGTCATTAGTTTTGGGGAGATATATTTCATGCTGGGGTCCAACTaGGCACCATCATGCTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: QYPAAVMDTVISFGEIYFMLGSN*APSCSA Trigger: AGCTGAGCATGATGGTGCGCAGTTGGACCCCAGCAT...GAAATATATCTCCCCAAAACTAATGACAGTATCCATTACAGCTGCAGGGTATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR GCA 90 bp | CAGGTAACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTGCTATTATTGCAGCCGCCAATaGTCCCTACAATCAGACATT | + |
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Preference number: 2 (lower is better) Translates to: QVTFDVAWSPKRIDKRCYYCSRQ*SLQSDI Trigger: AATGTCTGATTGTAGGGAGCATTGGCGGCTGCAATA...ATAGCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGTTACCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029839.11 |
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| 3UTR-3UTR CCA 90 bp | GTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTGCTATAATTACACTGGGATCGAGCAAAGTCAGATCTaGTCAGAATGTATTGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: VAWSPKRIDKRCYNYTGIEQSQI*SECIAA Trigger: GGCTGCAATACATTCTGACCAGATCTGACTTTGCTC...GATCCCAGTGTAATTATAGCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR-3UTR TCA 90 bp | CAATACCCTGCAGCTGTAATGGATACTGTCATTAGTTTTGGGGAGATATATTTCAGATTGAGAGCAGCCTaGTGTGGATGGTGGAAACCA | + |
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Preference number: 2 (lower is better) Translates to: QYPAAVMDTVISFGEIYFRLRAA*CGWWKP Trigger: TGGTTTCCACCATCCACATCAGGCTGCTCTCAATCT...GAAATATATCTCCCCAAAACTAATGACAGTATCCATTACAGCTGCAGGGTATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR GCA 90 bp | CAATACCCTGCAGCTGTAATGGATACTGTCATTAGTTTTGGGGAGATATATTTCATCTACCTCCGTGTGTaGCTGTGTGGGGTTATAGAC | + |
|
Preference number: 2 (lower is better) Translates to: QYPAAVMDTVISFGEIYFIYLRV*LCGVID Trigger: GTCTATAACCCCACACAGGCACACACGGAGGTAGAT...GAAATATATCTCCCCAAAACTAATGACAGTATCCATTACAGCTGCAGGGTATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR CCA 90 bp | AGGTGCTATAATTACACTGGGATCGCAGATGCCTGTGACTTTCTTTTTGTGATGGAGCAAAGTCAGATCTaGTCAGAATGTATTGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: RCYNYTGIADACDFLFVMEQSQI*SECIAA Trigger: GGCTGCAATACATTCTGACCAGATCTGACTTTGCTC...CATCACAAAAAGAAAGTCACAGGCATCTGCGATCCCAGTGTAATTATAGCACCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR-3UTR TCA 90 bp | GTAGTTTTTCCACAGGTAACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACCCCTGTTCATCTGGCTaGTTTATCACACACAATATT | + |
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Preference number: 2 (lower is better) Translates to: VVFPQVTFDVAWSPKRIDPCSSG*FITHNI Trigger: AATATTGTGTGTGATAAATCAGCCAGATGAACAGGG...GTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGTTACCTGTGGAAAAACTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR-3UTR TCA 90 bp | ATGTCTTACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATCCCTGTTCATCTGGCTaGTTTATCACACACAATATT | + |
|
Preference number: 2 (lower is better) Translates to: MSYDEQSQIWSECIAAANPCSSG*FITHNI Trigger: AATATTGTGTGTGATAAATCAGCCAGATGAACAGGG...ATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR-3UTR GCA 90 bp | AATGAGAAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAGGTCCTTATGTTTaGAAGTCTAACACATTACAC | + |
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Preference number: 2 (lower is better) Translates to: NEKRREREREREREREREVGPYV*KSNTLH Trigger: GTGTAATGTGTTAGACTTGCAAACATAAGGACCTAC...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTCTCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR GCA 90 bp | GCAGATTGCAGTATCCAGAGATCTGATTGCAGTCCAGACATCTACATTATCAAGAACTGCGCACCATCATaGTCAGCTTGTTTGTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: ADCSIQRSDCSPDIYIIKNCAPS*SACLFV Trigger: AACAAACAAACAAGCTGAGCATGATGGTGCGCAGTT...CTTGATAATGTAGATGTCTGGACTGCAATCAGATCTCTGGATACTGCAATCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR GCA 90 bp | AATGAGAAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTACCAATTTTGCCCTTaGATACCTTATTTGCCTATG | + |
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Preference number: 2 (lower is better) Translates to: NEKRREREREREREREREYQFCP*IPYLPM Trigger: CATAGGCAAATAAGGTATGCAAGGGCAAAATTGGTA...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTCTCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR CCA 90 bp | GCCTGTGACTTTCTTTTTGTGATGTCTTACGATGAGCAAAGTCAGATCTGGTCATGCTCCCTGTTCATCTaGCTGATTTATCACACACAA | + |
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Preference number: 2 (lower is better) Translates to: ACDFLFVMSYDEQSQIWSCSLFI*LIYHTQ Trigger: TTGTGTGTGATAAATCAGCCAGATGAACAGGGAGCA...TGACCAGATCTGACTTTGCTCATCGTAAGACATCACAAAAAGAAAGTCACAGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR-3UTR TCA 90 bp | AGAATATTAAAGGCATTTGTTGGGGAATGGTTTTGTGCACTGTGTACTCAGATGGTTTTCCATTACCTCTaGTTGGTTAATAAAGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: RILKAFVGEWFCALCTQMVFHYL*LVNKGL Trigger: CAGCCCTTTATTAACCAATCAGAGGTAATGGAAAAC...CATCTGAGTACACAGTGCACAAAACCATTCCCCAACAAATGCCTTTAATATTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR CCA 90 bp | CAATACCCTGCAGCTGTAATGGATACTGTCATTAGTTTTGGGGAGATATATTTCATTTTCCAACAAACTTaGATTTCCAGGTTCATCCTT | + |
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Preference number: 2 (lower is better) Translates to: QYPAAVMDTVISFGEIYFIFQQT*ISRFIL Trigger: AAGGATGAACCTGGAAATCCAAGTTTGTTGGAAAAT...GAAATATATCTCCCCAAAACTAATGACAGTATCCATTACAGCTGCAGGGTATTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR TCA 72 bp | GCACCACAAAGGCAGGGGGATGGAGGAGAGGGAGAATaGGAAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: APQRQGDGGEGE*EKERERERERE Trigger: CTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTCTCATTCTCCCTCTCCTCCATCCCCCTGCCTTTGTGGTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR CCA 72 bp | AGAGGGTCTCAAGTAGGCACCACAAAGGCAGGGGGATaGAGGAGAGGGAGAATGAGAAAAGGAGAGAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: RGSQVGTTKAGG*RRGRMRKGERE Trigger: CTCTCTCTCTCCTTTTCTCATTCTCCCTCTCCTCCATCCCCCTGCCTTTGTGGTGCCTACTTGAGACCCTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR GCA 72 bp | CTCCCTGTCTCTGACTCCCGAATGCTGGGGTCCAACTaGGCACCATCATGCTCAGCTTGTTTGTTTGTTGTT | + |
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Preference number: 3 (lower is better) Translates to: LPVSDSRMLGSN*APSCSACLFVV Trigger: AACAACAAACAAACAAGCTGAGCATGATGGTGCGCAGTTGGACCCCAGCATTCGGGAGTCAGAGACAGGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR CCA 72 bp | TGCCTGTGTGGGGTTATAGACAGGTACAGGTGTCTATaGAGACCAGAAGAGGGCAGCACATCTCCTGGATTG | + |
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Preference number: 3 (lower is better) Translates to: CLCGVIDRYRCL*RPEEGSTSPGL Trigger: CAATCCAGGAGATGTGCTGCCCTCTTCTGGTCTCCATAGACACCTGTACCTGTCTATAACCCCACACAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR CCA 72 bp | TTCTTCAAGTGCCATCTACCTCCGTGTGTGCCTGTGTaGGGTTATAGACAGGTACAGGTGTCTATGGAGACC | + |
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Preference number: 3 (lower is better) Translates to: FFKCHLPPCVPV*GYRQVQVSMET Trigger: GGTCTCCATAGACACCTGTACCTGTCTATAACCCCACACAGGCACACACGGAGGTAGATGGCACTTGAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR GCA 72 bp | CCCAGGTTCTGTGGCCTGAATGTAGGTCCTTATGTTTaGAAGTCTAACACATTACACCCTGAACTGCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: PRFCGLNVGPYV*KSNTLHPELPP Trigger: GGGAGGCAGTTCAGGGTGTAATGTGTTAGACTTGCAAACATAAGGACCTACATTCAGGCCACAGAACCTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR CAA 90 bp | TGGTCACCAAAGCGCATAGACAAAAGGTGCTATAATTACACTGGGATCGCAGATTCTGGTCAGAATGTATaGCAGCCGCCAATGCTCCCT | + |
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Preference number: 3 (lower is better) Translates to: WSPKRIDKRCYNYTGIADSGQNV*QPPMLP Trigger: AGGGAGCATTGGCGGCTGCAATACATTCTGACCAGA...ATCTGCGATCCCAGTGTAATTATAGCACCTTTTGTCTATGCGCTTTGGTGACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR-3UTR CAA 90 bp | CCTGTGTGGGGTTATAGACAGGTACAGGTGTCTATGGAGACCAGAAGAGGGCAGTATTTTCCAACAAACTaGGATTTCCAGGTTCATCCT | + |
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Preference number: 3 (lower is better) Translates to: PVWGYRQVQVSMETRRGQYFPTN*DFQVHP Trigger: AGGATGAACCTGGAAATCCAAGTTTGTTGGAAAATA...CTGCCCTCTTCTGGTCTCCATAGACACCTGTACCTGTCTATAACCCCACACAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR GCA 72 bp | GATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTaGTATAATTACACTGGGATCGCAGATGCCTGTGAC | + |
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Preference number: 3 (lower is better) Translates to: DVAWSPKRIDKR*YNYTGIADACD Trigger: GTCACAGGCATCTGCGATCCCAGTGTAATTATAGCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTACATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR TCA 72 bp | ACACTGGGATCGCAGATGCCTGTGACTTTCTTTTTGTaGTGTCTTACGATGAGCAAAGTCAGATCTGGTCAG | + |
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Preference number: 3 (lower is better) Translates to: TLGSQMPVTFFL*CLTMSKVRSGQ Trigger: CTGACCAGATCTGACTTTGCTCATCGTAAGACATCACAAAAAGAAAGTCACAGGCATCTGCGATCCCAGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR GCA 72 bp | AAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATaGTCCCTACAATCAGACATTAACTGTTCATCTGGC | + |
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Preference number: 3 (lower is better) Translates to: KSDLVRMYCSRQ*SLQSDINCSSG Trigger: GCCAGATGAACAGTTAATGTCTGATTGTAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029839.11 |
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| 3UTR GCA 72 bp | GGAATGGTTTTGTGCACTGTGTACTCAGATGCAGATTaGAGTATCCAGAGATCTGATTGCAGTCCAGACATC | + |
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Preference number: 3 (lower is better) Translates to: GMVLCTVYSDAD*SIQRSDCSPDI Trigger: GATGTCTGGACTGCAATCAGATCTCTGGATACTGCAATCTGCATCTGAGTACACAGTGCACAAAACCATTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR GCA 72 bp | AAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATaGTCCCTGTTCATCTGGCTGATTTATCACACACAA | + |
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Preference number: 3 (lower is better) Translates to: KSDLVRMYCSRQ*SLFIWLIYHTQ Trigger: TTGTGTGTGATAAATCAGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR CCA 72 bp | CTTTTTGTGATGTCTTACGATGAGCAAAGTCAGATCTaGTCAGAATGTATTGCAGCCGCCAATGCTCCCTAC | + |
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Preference number: 3 (lower is better) Translates to: LFVMSYDEQSQI*SECIAAANAPY Trigger: GTAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGACATCACAAAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029839.11 |
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| 3UTR CCA 72 bp | CTTTTTGTGATGTCTTACGATGAGCAAAGTCAGATCTaGTCAGAATGTATTGCAGCCGCCAATGCTCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: LFVMSYDEQSQI*SECIAAANAPC Trigger: ACAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGACATCACAAAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR-3UTR CAA 90 bp | AATGAGAAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCATGCTCAGCTTGTTaGTTTGTTGTTTTACCCAGG | + |
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Preference number: 3 (lower is better) Translates to: NEKRRERERERERERERESCSAC*FVVLPR Trigger: CCTGGGTAAAACAACAAACAAACAAGCTGAGCATGA...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTCTCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR GCA 72 bp | GTTATTTGCCACTTTGTGTACATGTGTATATGTAGGTaGACCCGTGTGTATGGGTGTGTGTACACATGTGCA | + |
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Preference number: 3 (lower is better) Translates to: VICHFVYMCICR*TRVYGCVYTCA Trigger: TGCACATGTGTACACACACCCATACACACGGGTGCACCTACATATACACATGTACACAAAGTGGCAAATAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR-3UTR CAA 90 bp | GACCAGAAGTCAATCTTAAGTGTCCTTCTTCAAGTGCCATCTACCTCCGTGTGTACCATCATGCTCAGCTaGTTTGTTTGTTGTTTTACC | + |
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Preference number: 3 (lower is better) Translates to: DQKSILSVLLQVPSTSVCTIMLS*FVCCFT Trigger: GGTAAAACAACAAACAAACAAGCTGAGCATGATGGT...ACACACGGAGGTAGATGGCACTTGAAGAAGGACACTTAAGATTGACTTCTGGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| 3UTR CCA 72 bp | AGAATGTATTGCAGCCGCCAATGCTCCCTGTTCATCTaGCTGATTTATCACACACAATATTCATCTGTTGAA | + |
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Preference number: 3 (lower is better) Translates to: RMYCSRQCSLFI*LIYHTQYSSVE Trigger: TTCAACAGATGAATATTGTGTGTGATAAATCAGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000197980.5 ENSMUST00000200488.5 |
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| 3UTR-3UTR CAA 90 bp | CAATACCCTGCAGCTGTAATGGATACTGTCATTAGTTTTGGGGAGATATATTTCCAGCTTGTTTGTTTGTaGTTTTACCCAGGTTCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: QYPAAVMDTVISFGEIYFQLVCL*FYPGSV Trigger: CACAGAACCTGGGTAAAACAACAAACAAACAAGCTG...GAAATATATCTCCCCAAAACTAATGACAGTATCCATTACAGCTGCAGGGTATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
||
| 3UTR-3UTR CAA 90 bp | AGAATATTAAAGGCATTTGTTGGGGAATGGTTTTGTGCACTGTGTACTCAGATGAAGTTTGCCCAAAATTaGCAAATAGGCTTGGTTGCT | + |
|
Preference number: 3 (lower is better) Translates to: RILKAFVGEWFCALCTQMKFAQN*QIGLVA Trigger: AGCAACCAAGCCTATTTGCAAATTTTGGGCAAACTT...CATCTGAGTACACAGTGCACAAAACCATTCCCCAACAAATGCCTTTAATATTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
||
| 3UTR-3UTR CAA 90 bp | AAGGATCTTGTAATAAATATAGGGTCACCATGTCTTTATTTGGGAGCTATAGGAGCTCAGCTTGTTTGTTaGTTGTTTTACCCAGGTTCT | + |
|
Preference number: 3 (lower is better) Translates to: KDLVINIGSPCLYLGAIGAQLVC*LFYPGS Trigger: AGAACCTGGGTAAAACAACAAACAAACAAGCTGAGC...TCCTATAGCTCCCAAATAAAGACATGGTGACCCTATATTTATTACAAGATCCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
||
| 3UTR-3UTR CAA 90 bp | AAGGATCTTGTAATAAATATAGGGTCACCATGTCTTTATTTGGGAGCTATAGGATTCCAGGTTCATCCTTaGACAAAGATACACTATCTG | + |
|
Preference number: 3 (lower is better) Translates to: KDLVINIGSPCLYLGAIGFQVHP*TKIHYL Trigger: CAGATAGTGTATCTTTGTCAAAGGATGAACCTGGAA...TCCTATAGCTCCCAAATAAAGACATGGTGACCCTATATTTATTACAAGATCCTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
||
| 3UTR CAA 72 bp | CTATGGAGACCAGAAGAGGGCAGCACATCTCCTGGATaGGAGATTGAGAGCAGCCTGATGTGGATGGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LWRPEEGSTSPG*EIESSLMWMVE Trigger: TTCCACCATCCACATCAGGCTGCTCTCAATCTCCAATCCAGGAGATGTGCTGCCCTCTTCTGGTCTCCATAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
||
| CDS-3UTR TCA 90 bp | TACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTCCTTGGTCGCATCTTaGTCTCCCTGGCTTCAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: YDEQSQIWSECIAAANAPSLVAS*SPWLQA Trigger: AGCTTGAAGCCAGGGAGATCAAGATGCGACCAAGGA...GGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
||
| CDS-3UTR GCA 90 bp | TGGTCACCAAAGCGCATAGACAAAAGGTGCTATAATTACACTGGGATCGCAGATCACACCAGTGTGGCCTaGCTTCTGCTGAGAGCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: WSPKRIDKRCYNYTGIADHTSVA*LLLRAA Trigger: CGCAGCTCTCAGCAGAAGGCAGGCCACACTGGTGTG...ATCTGCGATCCCAGTGTAATTATAGCACCTTTTGTCTATGCGCTTTGGTGACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR GCA 90 bp | GTAGTTTTTCCACAGGTAACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACCACACCAGTGTGGCCTaGCTTCTGCTGAGAGCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: VVFPQVTFDVAWSPKRIDHTSVA*LLLRAA Trigger: CGCAGCTCTCAGCAGAAGGCAGGCCACACTGGTGTG...GTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGTTACCTGTGGAAAAACTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR TCA 90 bp | CTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTGTTCATCTGGCTGATTTATTCCTTGGTCGCATCTTaGTCTCCCTGGCTTCAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LVRMYCSRQCSLFIWLIYSLVAS*SPWLQA Trigger: AGCTTGAAGCCAGGGAGATCAAGATGCGACCAAGGA...ATAAATCAGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCTGACCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000197980.5 ENSMUST00000200488.5 |
||
| CDS-3UTR TCA 90 bp | TGTCTTACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGTCCTTGGTCGCATCTTaGTCTCCCTGGCTTCAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: CLTMSKVRSGQNVLQPPMSLVAS*SPWLQA Trigger: AGCTTGAAGCCAGGGAGATCAAGATGCGACCAAGGA...CATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
||
| 3UTR CAA 72 bp | CTTACGATGAGCAAAGTCAGATCTGGTCAGAATGTATaGCAGCCGCCAATGCTCCCTGTTCATCTGGCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: LTMSKVRSGQNV*QPPMLPVHLAD Trigger: ATCAGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000197980.5 ENSMUST00000200488.5 |
||
| CDS-3UTR TCA 90 bp | TACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCCTTGAAGAAACCCGCTaGGAAGGAAATGAAGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: YDEQSQIWSECIAAANAPLEETR*EGNEGK Trigger: TTTCCCTTCATTTCCTTCTCAGCGGGTTTCTTCAAG...GGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR TCA 90 bp | CTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTGTTCATCTGGCTGATTTATCTTGAAGAAACCCGCTaGGAAGGAAATGAAGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: LVRMYCSRQCSLFIWLIYLEETR*EGNEGK Trigger: TTTCCCTTCATTTCCTTCTCAGCGGGTTTCTTCAAG...ATAAATCAGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCTGACCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197980.5 |
||
| CDS-3UTR CCA 90 bp | AGAATGTATTGCAGCCGCCAATGCTCCCTGTTCATCTGGCTGATTTATCACACAGAAATCAATCAGATCTaGCAGGGCAGTGCACTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: RMYCSRQCSLFIWLIYHTEINQI*QGSALL Trigger: AAGGAGTGCACTGCCCTGCCAGATCTGATTGATTTC...TGTGTGATAAATCAGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197980.5 |
||
| 3UTR CAA 72 bp | ACCTCTGATTGGTTAATAAAGGGCTGGCCAGCCAATTaGGAACTTCAAATCCCAGAGAGGGTCTCAAGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: TSDWLIKGWPAN*ELQIPERVSSR Trigger: CCTACTTGAGACCCTCTCTGGGATTTGAAGTTCCAAATTGGCTGGCCAGCCCTTTATTAACCAATCAGAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
||
| CDS-3UTR TCA 90 bp | GTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTGTTCATCTGGCTGAGGAGCAAATGATTTaGGTTTCAGTTCTGATTCTT | + |
|
Preference number: 4 (lower is better) Translates to: VRSGQNVLQPPMLPVHLAEEQMI*VSVLIL Trigger: AAGAATCAGAACTGAAACTCAAATCATTTGCTCCTC...AGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197980.5 |
||
| CDS-3UTR CCA 90 bp | CCACAGGTAACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTGCATTTGCCAAATTCCTTaGTCGCATCTTGATCTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: PQVTFDVAWSPKRIDKRCICQIP*SHLDLP Trigger: AGGGAGATCAAGATGCGACCAAGGAATTTGGCAAAT...GCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGTTACCTGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
||
| CDS-3UTR TCA 90 bp | TACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCAAATATAATTCTGGTTaGAGAGCATATGGAGGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: YDEQSQIWSECIAAANAPKYNSG*RAYGGA Trigger: TGCTCCTCCATATGCTCTTCAACCAGAATTATATTT...GGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR GCA 90 bp | TGTATTGCAGCCGCCAATGCTCCCTACAATCAGACATTAACTGTTCATCTGGCTAGTTGGTCAATTGCGTaGTGTACTTCAGTAATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: CIAAANAPYNQTLTVHLASWSIA*CTSVIW Trigger: CCAGATTACTGAAGTACAGCACGCAATTGACCAACT...AGCCAGATGAACAGTTAATGTCTGATTGTAGGGAGCATTGGCGGCTGCAATACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029839.11 |
||
| CDS-3UTR GCA 90 bp | AGAATGTATTGCAGCCGCCAATGCTCCCTGTTCATCTGGCTGATTTATCACACAAGTTGGTCAATTGCGTaGTGTACTTCAGTAATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: RMYCSRQCSLFIWLIYHTSWSIA*CTSVIW Trigger: CCAGATTACTGAAGTACAGCACGCAATTGACCAACT...TGTGTGATAAATCAGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197980.5 |
||
| CDS-3UTR CCA 90 bp | GCCTGTGACTTTCTTTTTGTGATGTCTTACGATGAGCAAAGTCAGATCTGGTCAGAAATCAATCAGATCTaGCAGGGCAGTGCACTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: ACDFLFVMSYDEQSQIWSEINQI*QGSALL Trigger: AAGGAGTGCACTGCCCTGCCAGATCTGATTGATTTC...TGACCAGATCTGACTTTGCTCATCGTAAGACATCACAAAAAGAAAGTCACAGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR CCA 90 bp | TACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCATTTTCCAACAAACTTaGATTTCCAGGTTCATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: YDEQSQIWSECIAAANAPIFQQT*ISRFIL Trigger: AAGGATGAACCTGGAAATCCAAGTTTGTTGGAAAAT...GGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR TCA 90 bp | TCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTACAATCAGACATTGAGGAGCAAATGATTTaGGTTTCAGTTCTGATTCTT | + |
|
Preference number: 4 (lower is better) Translates to: SDLVRMYCSRQCSLQSDIEEQMI*VSVLIL Trigger: AAGAATCAGAACTGAAACTCAAATCATTTGCTCCTC...AATGTCTGATTGTAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029839.11 |
||
| CDS-3UTR TCA 90 bp | TCTTACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTAAATATAATTCTGGTTaGAGAGCATATGGAGGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SYDEQSQIWSECIAAANAKYNSG*RAYGGA Trigger: TGCTCCTCCATATGCTCTTCAACCAGAATTATATTT...AGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR TCA 90 bp | AGGTGCTATAATTACACTGGGATCGCAGATGCCTGTGACTTTCTTTTTGTGATGTCCTCAGCTTCTTCCTaGTTTGTAAAGTCTCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: RCYNYTGIADACDFLFVMSSASS*FVKSLH Trigger: ATGGAGAGACTTTACAAATCAGGAAGAAGCTGAGGA...CATCACAAAAAGAAAGTCACAGGCATCTGCGATCCCAGTGTAATTATAGCACCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR CCA 90 bp | CCACAGGTAACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTGCAATTTTCTCTTAAGTTaGTCAATTGCGTGCTGTACT | + |
|
Preference number: 4 (lower is better) Translates to: PQVTFDVAWSPKRIDKRCNFLLS*SIACCT Trigger: AGTACAGCACGCAATTGACCAACTTAAGAGAAAATT...GCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGTTACCTGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR CCA 90 bp | ATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTGTTAATTTTCTCTTAAGTTaGTCAATTGCGTGCTGTACT | + |
|
Preference number: 4 (lower is better) Translates to: MSKVRSGQNVLQPPMLPVNFLLS*SIACCT Trigger: AGTACAGCACGCAATTGACCAACTTAAGAGAAAATT...AACAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197980.5 |
||
| CDS-3UTR CCA 90 bp | AGAATGTATTGCAGCCGCCAATGCTCCCTGTTCATCTGGCTGATTTATCACACACAAAGATACACTATCTaGTCTGTAGATTGTTCCATT | + |
|
Preference number: 4 (lower is better) Translates to: RMYCSRQCSLFIWLIYHTQRYTI*SVDCSI Trigger: AATGGAACAATCTACAGACCAGATAGTGTATCTTTG...TGTGTGATAAATCAGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197980.5 |
||
| CDS-3UTR CCA 90 bp | ACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTGCTATAATTACATTTGCCAAATTCCTTaGTCGCATCTTGATCTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: TFDVAWSPKRIDKRCYNYICQIP*SHLDLP Trigger: AGGGAGATCAAGATGCGACCAAGGAATTTGGCAAAT...GTAATTATAGCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
||
| CDS-3UTR TCA 90 bp | GCAGATTGCAGTATCCAGAGATCTGATTGCAGTCCAGACATCTACATTATCAAGGAGGAGCAAATGATTTaGGTTTCAGTTCTGATTCTT | + |
|
Preference number: 4 (lower is better) Translates to: ADCSIQRSDCSPDIYIIKEEQMI*VSVLIL Trigger: AAGAATCAGAACTGAAACTCAAATCATTTGCTCCTC...CTTGATAATGTAGATGTCTGGACTGCAATCAGATCTCTGGATACTGCAATCTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
||
| CDS-3UTR CCA 90 bp | TGGTCACCAAAGCGCATAGACAAAAGGTGCTATAATTACACTGGGATCGCAGATATTTTCCAACAAACTTaGATTTCCAGGTTCATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: WSPKRIDKRCYNYTGIADIFQQT*ISRFIL Trigger: AAGGATGAACCTGGAAATCCAAGTTTGTTGGAAAAT...ATCTGCGATCCCAGTGTAATTATAGCACCTTTTGTCTATGCGCTTTGGTGACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR CCA 90 bp | AGGTGCTATAATTACACTGGGATCGCAGATGCCTGTGACTTTCTTTTTGTGATGATGATCCCAGCAACTTaGAATTTCCAAAGTGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: RCYNYTGIADACDFLFVMMIPAT*NFQSDF Trigger: AAAATCACTTTGGAAATTCCAAGTTGCTGGGATCAT...CATCACAAAAAGAAAGTCACAGGCATCTGCGATCCCAGTGTAATTATAGCACCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR GCA 90 bp | CTTTTTGTGATGTCTTACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCACTTAAGTTGGTCAATTaGGTGCTGTACTTCAGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: LFVMSYDEQSQIWSECIALKLVN*VLYFSN Trigger: ATTACTGAAGTACAGCACGCAATTGACCAACTTAAG...TGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGACATCACAAAAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR CCA 90 bp | CCCTACAATCAGACATTAACTGTTCATCTGGCTGATTTATCACACACAATATTCCAAAGATACACTATCTaGTCTGTAGATTGTTCCATT | + |
|
Preference number: 4 (lower is better) Translates to: PYNQTLTVHLADLSHTIFQRYTI*SVDCSI Trigger: AATGGAACAATCTACAGACCAGATAGTGTATCTTTG...GAATATTGTGTGTGATAAATCAGCCAGATGAACAGTTAATGTCTGATTGTAGGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029839.11 |
||
| 3UTR CAA 72 bp | TATTTTCCAACAAACTTGGATTTCCAGGTTCATCCTTaGACAAAGATACACTATCTGGTCTGTAGATTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: YFPTNLDFQVHP*TKIHYLVCRLF Trigger: GAACAATCTACAGACCAGATAGTGTATCTTTGTCAAAGGATGAACCTGGAAATCCAAGTTTGTTGGAAAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
||
| 3UTR CAA 72 bp | GATCTTGTAATAAATATAGGGTCACCATGTCTTTATTaGGGAGCTATAGGAGGCATAGAAAAGTCAAAAACA | + |
|
Preference number: 4 (lower is better) Translates to: DLVINIGSPCLY*GAIGGIEKSKT Trigger: TGTTTTTGACTTTTCTATGCCTCCTATAGCTCCCAAATAAAGACATGGTGACCCTATATTTATTACAAGATC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
||
| CDS-3UTR CAA 90 bp | GTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTGTTCATCTGGCTTTCCTTGGTCGCATCTaGATCTCCCTGGCTTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: VRSGQNVLQPPMLPVHLAFLGRI*ISLASS Trigger: GCTTGAAGCCAGGGAGATCAAGATGCGACCAAGGAA...AGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000197980.5 ENSMUST00000200488.5 |
||
| CDS-3UTR CAA 90 bp | TACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTTCCTTGGTCGCATCTaGATCTCCCTGGCTTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: YDEQSQIWSECIAAANAPFLGRI*ISLASS Trigger: GCTTGAAGCCAGGGAGATCAAGATGCGACCAAGGAA...GGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
||
| CDS-3UTR CAA 90 bp | ATGTCTTACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATTTCCTTGGTCGCATCTaGATCTCCCTGGCTTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: MSYDEQSQIWSECIAAANFLGRI*ISLASS Trigger: GCTTGAAGCCAGGGAGATCAAGATGCGACCAAGGAA...ATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 ENSMUST00000200488.5 |
||
| CDS-3UTR CAA 90 bp | CCACAGGTAACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTGCGTGATTTTGTGTAGGTaGGCTTTCCTCAGCTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: PQVTFDVAWSPKRIDKRCVILCR*AFLSFF Trigger: GAAGAAGCTGAGGAAAGCCAACCTACACAAAATCAC...GCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGTTACCTGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR CAA 90 bp | TACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCGGAGGAGCAAATGATTaGAGTTTCAGTTCTGATTCT | + |
|
Preference number: 5 (lower is better) Translates to: YDEQSQIWSECIAAANAPGGAND*SFSSDS Trigger: AGAATCAGAACTGAAACTCAAATCATTTGCTCCTCC...GGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR CAA 90 bp | ATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTGTTTTCCAGGTTCATCCTTaGACAAAGATACACTATCTG | + |
|
Preference number: 5 (lower is better) Translates to: MSKVRSGQNVLQPPMLPVFQVHP*TKIHYL Trigger: CAGATAGTGTATCTTTGTCAAAGGATGAACCTGGAA...AACAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197980.5 |
||
| CDS-3UTR CAA 90 bp | ATGTCTTACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGTGATTTTGTGTAGGTaGGCTTTCCTCAGCTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: MSYDEQSQIWSECIAAANVILCR*AFLSFF Trigger: GAAGAAGCTGAGGAAAGCCAACCTACACAAAATCAC...ATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTCATCGTAAGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
||
| CDS-3UTR CAA 90 bp | TCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTACAATCAGACATTGGAGGAGCAAATGATTaGAGTTTCAGTTCTGATTCT | + |
|
Preference number: 5 (lower is better) Translates to: SDLVRMYCSRQCSLQSDIGGAND*SFSSDS Trigger: AGAATCAGAACTGAAACTCAAATCATTTGCTCCTCC...AATGTCTGATTGTAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029839.11 |
||
| CDS-3UTR CAA 90 bp | GAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTACAATTATTTTCCAACAAACTaGGATTTCCAGGTTCATCCT | + |
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Preference number: 5 (lower is better) Translates to: EQSQIWSECIAAANAPYNYFPTN*DFQVHP Trigger: AGGATGAACCTGGAAATCCAAGTTTGTTGGAAAATA...ATTGTAGGGAGCATTGGCGGCTGCAATACATTCTGACCAGATCTGACTTTGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029839.11 |
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| CDS-3UTR CAA 90 bp | AGAATGTATTGCAGCCGCCAATGCTCCCTGTTCATCTGGCTGATTTATCACACATATTTTCCAACAAACTaGGATTTCCAGGTTCATCCT | + |
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Preference number: 5 (lower is better) Translates to: RMYCSRQCSLFIWLIYHTYFPTN*DFQVHP Trigger: AGGATGAACCTGGAAATCCAAGTTTGTTGGAAAATA...TGTGTGATAAATCAGCCAGATGAACAGGGAGCATTGGCGGCTGCAATACATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197980.5 |
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| CDS-3UTR CAA 90 bp | TGGTCACCAAAGCGCATAGACAAAAGGTGCTATAATTACACTGGGATCGCAGATATTTCCAAAGTGATTTaGTGTAGGTTGGCTTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: WSPKRIDKRCYNYTGIADISKVI*CRLAFL Trigger: GAGGAAAGCCAACCTACACAAAATCACTTTGGAAAT...ATCTGCGATCCCAGTGTAATTATAGCACCTTTTGTCTATGCGCTTTGGTGACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
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| CDS-3UTR CAA 90 bp | CAGGTAACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTGCTATCAATTTTCTCTTAAGTaGGTCAATTGCGTGCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: QVTFDVAWSPKRIDKRCYQFSLK*VNCVLY Trigger: GTACAGCACGCAATTGACCAACTTAAGAGAAAATTG...ATAGCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGTTACCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
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| CDS-3UTR CAA 90 bp | GCAGATTGCAGTATCCAGAGATCTGATTGCAGTCCAGACATCTACATTATCAAGGGAGGAGCAAATGATTaGAGTTTCAGTTCTGATTCT | + |
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Preference number: 5 (lower is better) Translates to: ADCSIQRSDCSPDIYIIKGGAND*SFSSDS Trigger: AGAATCAGAACTGAAACTCAAATCATTTGCTCCTCC...CTTGATAATGTAGATGTCTGGACTGCAATCAGATCTCTGGATACTGCAATCTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093951.3 |
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| CDS-3UTR CAA 90 bp | ACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTGCTATAATTACATTTCCAAAGTGATTTaGTGTAGGTTGGCTTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: TFDVAWSPKRIDKRCYNYISKVI*CRLAFL Trigger: GAGGAAAGCCAACCTACACAAAATCACTTTGGAAAT...GTAATTATAGCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
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| CDS-3UTR CAA 90 bp | ACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTGCTATAATTACCAATTTTCTCTTAAGTaGGTCAATTGCGTGCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: TFDVAWSPKRIDKRCYNYQFSLK*VNCVLY Trigger: GTACAGCACGCAATTGACCAACTTAAGAGAAAATTG...GTAATTATAGCACCTTTTGTCTATGCGCTTTGGTGACCAAGCTACATCAAAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
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| CDS TCA 90 bp | TCAATTTTTAATAAAGAGGTATCAGTTAATCTTGAAGAAACCCGCTaGGAAGGAAATGAAGGGAAATCAATCAGATCTGGCAGGGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: SIFNKEVSVNLEETR*EGNEGKSIRSGRAV Trigger: CACTGCCCTGCCAGATCTGATTGATTTCCCTTCATTTCCTTCTCAGCGGGTTTCTTCAAGATTAACTGATACCTCTTTATTAAAAATTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
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| CDS-3UTR CAA 90 bp | TGTGACTTTCTTTTTGTGATGTCTTACGATGAGCAAAGTCAGATCTGGTCAGAATTCCAGGTTCATCCTTaGACAAAGATACACTATCTG | + |
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Preference number: 5 (lower is better) Translates to: CDFLFVMSYDEQSQIWSEFQVHP*TKIHYL Trigger: CAGATAGTGTATCTTTGTCAAAGGATGAACCTGGAA...TTCTGACCAGATCTGACTTTGCTCATCGTAAGACATCACAAAAAGAAAGTCACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
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| CDS CAA 72 bp | GGGAAATCAATCAGATCTGGCAGGGCAGTGCACTCCTaGTCACACACCAGTGTGGCCTGCCTTCTGCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: GKSIRSGRAVHS*SHTSVACLLLR Trigger: TCTCAGCAGAAGGCAGGCCACACTGGTGTGTGACAAGGAGTGCACTGCCCTGCCAGATCTGATTGATTTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
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| CDS CAA 90 bp | GGAAATGAAGGGAAATCAATCAGATCTGGCAGGGCAGTGCACTCCTaGTCACACACCAGTGTGGCCTGCCTTCTGCTGAGAGCTGCGTTA | + |
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Preference number: 6 (lower is better) Translates to: GNEGKSIRSGRAVHS*SHTSVACLLLRAAL Trigger: TAACGCAGCTCTCAGCAGAAGGCAGGCCACACTGGTGTGTGACAAGGAGTGCACTGCCCTGCCAGATCTGATTGATTTCCCTTCATTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
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| CDS CAA 72 bp | CAGCAACTTGGAATTTCCAAAGTGATTTTGTGTAGGTaGGCTTTCCTCAGCTTCTTCCTGATTTGTAAAGTC | + |
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Preference number: 6 (lower is better) Translates to: QQLGISKVILCR*AFLSFFLICKV Trigger: GACTTTACAAATCAGGAAGAAGCTGAGGAAAGCCAACCTACACAAAATCACTTTGGAAATTCCAAGTTGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
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| CDS CAA 72 bp | AAAGAAATGGACTTTTTAGGTTCCCAAAATAATCGTTaGATTCTTCCAATGATCCCAGCAACTTGGAATTTC | + |
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Preference number: 6 (lower is better) Translates to: KEMDFLGSQNNR*ILPMIPATWNF Trigger: GAAATTCCAAGTTGCTGGGATCATTGGAAGAATCAAACGATTATTTTGGGAACCTAAAAAGTCCATTTCTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029839.11 ENSMUST00000197980.5 |
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