Pregenerated sensors for SPAM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029682Ensembl transcript IDs: ENSMUST00000031693.3, ENSMUST00000202331.4, ENSMUST00000202569.4
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TTGGCTGCTAGGGTAACATTGACTATGTATGGATTCAGGGTCGTCTaGATGTATTTATGTAGGATTGGGCAACCTGCCGCACGTTGTGCT | + |
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Preference number: 5 (lower is better) Translates to: LAARVTLTMYGFRVV*MYLCRIGQPAARCA Trigger: AGCACAACGTGCGGCAGGTTGCCCAATCCTACATAAATACATGCAGACGACCCTGAATCCATACATAGTCAATGTTACCCTAGCAGCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CCA 90 bp | GGTACGATCAGTAAAAACAAGACGGATATAGACAAAAATCGGGACTaGATCCGATGCATTCCCAACCTTGGACACTCTGATAGCTTCCAC | + |
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Preference number: 5 (lower is better) Translates to: GTISKNKTDIDKNRD*IRCIPNLGHSDSFH Trigger: GTGGAAGCTATCAGAGTGTCCAAGGTTGGGAATGCATCGGATCCAGTCCCGATTTTTGTCTATATCCGTCTTGTTTTTACTGATCGTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS GCA 90 bp | ATGAGCTTGATAATCGCCCCTCTGAGGTATTCCTCCATAATGTTCTaGTTGGTTTGCATCTATGTGAGGATACAAACCAAGTCGATCAAC | + |
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Preference number: 5 (lower is better) Translates to: MSLIIAPLRYSSIMF*LVCIYVRIQTKSIN Trigger: GTTGATCGACTTGGTTTGTATCCTCACATAGATGCAAACCAAGCAGAACATTATGGAGGAATACCTCAGAGGGGCGATTATCAAGCTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CCA 90 bp | TCCATAAACTTCCTTCCTGCCTCTTCAAATTGTTGTATGGCTTTCTaGGTGGCTTCTGTGATACTAAGTCCTGGATTAGTTGATTGGACC | + |
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Preference number: 5 (lower is better) Translates to: SINFLPASSNCCMAF*VASVILSPGLVDWT Trigger: GGTCCAATCAACTAATCCAGGACTTAGTATCACAGAAGCCACCCAGAAAGCCATACAACAATTTGAAGAGGCAGGAAGGAAGTTTATGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS TCA 90 bp | TATGGCTTTCTGGGTGGCTTCTGTGATACTAAGTCCTGGATTAGTTaGTTGGACCAATTCAATAGACTTATTCCTGTAGTTATCCTTAGG | + |
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Preference number: 5 (lower is better) Translates to: YGFLGGFCDTKSWIS*LDQFNRLIPVVILR Trigger: CCTAAGGATAACTACAGGAATAAGTCTATTGAATTGGTCCAATCAACTAATCCAGGACTTAGTATCACAGAAGCCACCCAGAAAGCCATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CCA 90 bp | CTTTCTTTTCTTCTTGAACACATGCCTTTCTCATTACAAAGTGTTTaGCTGCACATTTTGGCTGCTAGGGTAACATTGACTATGTATGGA | + |
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Preference number: 5 (lower is better) Translates to: LSFLLEHMPFSLQSV*LHILAARVTLTMYG Trigger: TCCATACATAGTCAATGTTACCCTAGCAGCCAAAATGTGCAGCCAAACACTTTGTAATGAGAAAGGCATGTGTTCAAGAAGAAAAGAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CCA 72 bp | CAGGTAGGAGGTAGAAGGCTGGGTTGGGTTCTACCTTaGCTTTTATACAAACATTGTCACCGACGCACACAT | + |
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Preference number: 6 (lower is better) Translates to: QVGGRRLGWVLP*LLYKHCHRRTH Trigger: ATGTGTGCGTCGGTGACAATGTTTGTATAAAAGCCAAGGTAGAACCCAACCCAGCCTTCTACCTCCTACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS GCA 72 bp | AAGACGGATATAGACAAAAATCGGGACTGGATCCGATaGATTCCCAACCTTGGACACTCTGATAGCTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: KTDIDKNRDWIR*IPNLGHSDSFH Trigger: GTGGAAGCTATCAGAGTGTCCAAGGTTGGGAATGCATCGGATCCAGTCCCGATTTTTGTCTATATCCGTCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CCA 72 bp | GAAGGCTTTTGCCAGGTAGGAGGTAGAAGGCTGGGTTaGGTTCTACCTTGGCTTTTATACAAACATTGTCAC | + |
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Preference number: 6 (lower is better) Translates to: EGFCQVGGRRLG*VLPWLLYKHCH Trigger: GTGACAATGTTTGTATAAAAGCCAAGGTAGAACCCAACCCAGCCTTCTACCTCCTACCTGGCAAAAGCCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CAA 72 bp | ATCGCCCCTCTGAGGTATTCCTCCATAATGTTCTGCTaGGTTTGCATCTATGTGAGGATACAAACCAAGTCG | + |
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Preference number: 6 (lower is better) Translates to: IAPLRYSSIMFC*VCIYVRIQTKS Trigger: CGACTTGGTTTGTATCCTCACATAGATGCAAACCAAGCAGAACATTATGGAGGAATACCTCAGAGGGGCGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CAA 72 bp | AGCTTCCACAACTCGGTAGCGGACATAGAGGGTAGCTaGTCGATTGGACTTCAAGTCTTTCTTCAAATAGAC | + |
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Preference number: 6 (lower is better) Translates to: SFHNSVADIEGS*SIGLQVFLQID Trigger: GTCTATTTGAAGAAAGACTTGAAGTCCAATCGACAAGCTACCCTCTATGTCCGCTACCGAGTTGTGGAAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CAA 72 bp | ATGCTCTATGTCAGTCTTAGCTTTGCGCAAATGAGCTaGATAATCGCCCCTCTGAGGTATTCCTCCATAATG | + |
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Preference number: 6 (lower is better) Translates to: MLYVSLSFAQMS*IIAPLRYSSIM Trigger: CATTATGGAGGAATACCTCAGAGGGGCGATTATCAAGCTCATTTGCGCAAAGCTAAGACTGACATAGAGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CAA 72 bp | AGTGTTTGGCTGCACATTTTGGCTGCTAGGGTAACATaGACTATGTATGGATTCAGGGTCGTCTGCATGTAT | + |
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Preference number: 6 (lower is better) Translates to: SVWLHILAARVT*TMYGFRVVCMY Trigger: ATACATGCAGACGACCCTGAATCCATACATAGTCAATGTTACCCTAGCAGCCAAAATGTGCAGCCAAACACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CAA 90 bp | TGGAATGTAATGCTCTATGTCAGTCTTAGCTTTGCGCAAATGAGCTaGATAATCGCCCCTCTGAGGTATTCCTCCATAATGTTCTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: WNVMLYVSLSFAQMS*IIAPLRYSSIMFCL Trigger: CAAGCAGAACATTATGGAGGAATACCTCAGAGGGGCGATTATCAAGCTCATTTGCGCAAAGCTAAGACTGACATAGAGCATTACATTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS GCA 72 bp | CCTCTGAGGTATTCCTCCATAATGTTCTGCTTGGTTTaGATCTATGTGAGGATACAAACCAAGTCGATCAAC | + |
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Preference number: 6 (lower is better) Translates to: PLRYSSIMFCLV*IYVRIQTKSIN Trigger: GTTGATCGACTTGGTTTGTATCCTCACATAGATGCAAACCAAGCAGAACATTATGGAGGAATACCTCAGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS GCA 72 bp | ATAATCGCCCCTCTGAGGTATTCCTCCATAATGTTCTaGTTGGTTTGCATCTATGTGAGGATACAAACCAAG | + |
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Preference number: 6 (lower is better) Translates to: IIAPLRYSSIMF*LVCIYVRIQTK Trigger: CTTGGTTTGTATCCTCACATAGATGCAAACCAAGCAGAACATTATGGAGGAATACCTCAGAGGGGCGATTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CCA 72 bp | TTCCTTCCTGCCTCTTCAAATTGTTGTATGGCTTTCTaGGTGGCTTCTGTGATACTAAGTCCTGGATTAGTT | + |
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Preference number: 6 (lower is better) Translates to: FLPASSNCCMAF*VASVILSPGLV Trigger: AACTAATCCAGGACTTAGTATCACAGAAGCCACCCAGAAAGCCATACAACAATTTGAAGAGGCAGGAAGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CCA 72 bp | AGTAAAAACAAGACGGATATAGACAAAAATCGGGACTaGATCCGATGCATTCCCAACCTTGGACACTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: SKNKTDIDKNRD*IRCIPNLGHSD Trigger: ATCAGAGTGTCCAAGGTTGGGAATGCATCGGATCCAGTCCCGATTTTTGTCTATATCCGTCTTGTTTTTACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CAA 72 bp | CCCTCTGAGGTATTCCTCCATAATGTTCTGCTTGGTTaGCATCTATGTGAGGATACAAACCAAGTCGATCAA | + |
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Preference number: 6 (lower is better) Translates to: PSEVFLHNVLLG*HLCEDTNQVDQ Trigger: TTGATCGACTTGGTTTGTATCCTCACATAGATGCAAACCAAGCAGAACATTATGGAGGAATACCTCAGAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CAA 90 bp | AGCTTGATAATCGCCCCTCTGAGGTATTCCTCCATAATGTTCTGCTaGGTTTGCATCTATGTGAGGATACAAACCAAGTCGATCAACATA | + |
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Preference number: 6 (lower is better) Translates to: SLIIAPLRYSSIMFC*VCIYVRIQTKSINI Trigger: TATGTTGATCGACTTGGTTTGTATCCTCACATAGATGCAAACCAAGCAGAACATTATGGAGGAATACCTCAGAGGGGCGATTATCAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CCA 72 bp | CTTCTTGAACACATGCCTTTCTCATTACAAAGTGTTTaGCTGCACATTTTGGCTGCTAGGGTAACATTGACT | + |
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Preference number: 6 (lower is better) Translates to: LLEHMPFSLQSV*LHILAARVTLT Trigger: AGTCAATGTTACCCTAGCAGCCAAAATGTGCAGCCAAACACTTTGTAATGAGAAAGGCATGTGTTCAAGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CAA 90 bp | CACAACGTTCAGTTGGGACATTCCAAATCCAAAGGAAAGTTGTATTaGATAAAATTGGTGCTGCCCTATAATCCACAGTCAAGGAGCATG | + |
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Preference number: 6 (lower is better) Translates to: HNVQLGHSKSKGKLY*IKLVLPYNPQSRSM Trigger: CATGCTCCTTGACTGTGGATTATAGGGCAGCACCAATTTTATCAAATACAACTTTCCTTTGGATTTGGAATGTCCCAACTGAACGTTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CAA 90 bp | TCATTACAAAGTGTTTGGCTGCACATTTTGGCTGCTAGGGTAACATaGACTATGTATGGATTCAGGGTCGTCTGCATGTATTTATGTAGG | + |
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Preference number: 6 (lower is better) Translates to: SLQSVWLHILAARVT*TMYGFRVVCMYLCR Trigger: CCTACATAAATACATGCAGACGACCCTGAATCCATACATAGTCAATGTTACCCTAGCAGCCAAAATGTGCAGCCAAACACTTTGTAATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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| CDS CAA 90 bp | GATAATCGCCCCTCTGAGGTATTCCTCCATAATGTTCTGCTTGGTTaGCATCTATGTGAGGATACAAACCAAGTCGATCAACATAAAATA | + |
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Preference number: 6 (lower is better) Translates to: DNRPSEVFLHNVLLG*HLCEDTNQVDQHKI Trigger: TATTTTATGTTGATCGACTTGGTTTGTATCCTCACATAGATGCAAACCAAGCAGAACATTATGGAGGAATACCTCAGAGGGGCGATTATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031693.3 ENSMUST00000202331.4 ENSMUST00000202569.4 |
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