Pregenerated sensors for SPAG7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018287Ensembl transcript IDs: ENSMUST00000018431.13, ENSMUST00000129434.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACAGTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAAGTTCCAAGGCTTCTCCTCCAGCCTaGGTGACAGCTGGCAGGGCC | + |
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Preference number: 2 (lower is better) Translates to: TVFIQCKVTQAHGEESSKASPPA*VTAGRA Trigger: GGCCCTGCCAGCTGTCACTCAGGCTGGAGGAGAAGC...CTTGGAACTTTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACACACACACACACACACACACCCCATACATCCAAATTCCAGCAGTCCCTCCATGCCCCTaGCTTGCTGGAGGTCAAAGC | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHTHTPYIQIPAVPPCP*LAGGQS Trigger: GCTTTGACCTCCAGCAAGGCAGGGGCATGGAGGGAC...TGCTGGAATTTGGATGTATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| 3UTR-3UTR GCA 90 bp | CACACACACACCCCATACATCCAAATTCCAGCAGTGATAAACACTTGCTTCTCCAGCCTTGTCCCTCCATaGCCCTGCCTTGCTGGAGGT | + |
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Preference number: 2 (lower is better) Translates to: HTHTPYIQIPAVINTCFSSLVPP*PCLAGG Trigger: ACCTCCAGCAAGGCAGGGGCATGGAGGGACAAGGCT...GGAGAAGCAAGTGTTTATCACTGCTGGAATTTGGATGTATGGGGTGTGTGTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| 3UTR-3UTR CCA 90 bp | GTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAAGTTCCAAGGGTATGCCCCTGCCTTGCTaGAGGTCAAAGCAAGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: VFIQCKVTQAHGEESSKGMPLPC*RSKQGG Trigger: CCCACCTTGCTTTGACCTCCAGCAAGGCAGGGGCAT...ACCCTTGGAACTTTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| 3UTR-3UTR GCA 90 bp | CAAACAGTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAAGTTCCTCCATGCCCCTGCCTTaGTGGAGGTCAAAGCAAGGT | + |
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Preference number: 2 (lower is better) Translates to: QTVFIQCKVTQAHGEESSSMPLP*WRSKQG Trigger: ACCTTGCTTTGACCTCCAGCAAGGCAGGGGCATGGA...GGAACTTTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACACTGTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| 3UTR-3UTR CCA 90 bp | CAAACAGTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAAGTTCCAATGGGGCTCCAGAATaGGTCCTGATAGCAGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: QTVFIQCKVTQAHGEESSNGAPE*VLIAAA Trigger: GGCTGCTGCTATCAGGACCCATTCTGGAGCCCCATT...GGAACTTTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACACTGTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| 3UTR-3UTR CAA 90 bp | ACACACACACACACACACACACACACACACACACACACACACCCCATACATCCACTGATAGCAGCAGCCTaGTCCCTCCATGCCCCTGCC | + |
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Preference number: 3 (lower is better) Translates to: THTHTHTHTHTHTHPIHPLIAAA*SLHAPA Trigger: GGCAGGGGCATGGAGGGACAAGGCTGCTGCTATCAG...TGGATGTATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | CTTGTCCCTCCATGCCCCTGCCTTGCTGGAGGTCAAAGCAAGGTGGGCGGGATGCCATGGAGCTCAGGATaGAGCCCAGTAGGTCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: LVPPCPCLAGGQSKVGGMPWSSG*SPVGPP Trigger: TGGCGGACCTACTGGGCTCCATCCTGAGCTCCATGG...CATCCCGCCCACCTTGCTTTGACCTCCAGCAAGGCAGGGGCATGGAGGGACAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | CACACACACACACACACACACACACACACACACACACACACCCCATACATCCAATTGCGCCGACTCTCCTaGTCACCGAGGCTGGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: HTHTHTHTHTHTHTPYIQLRRLS*SPRLGG Trigger: ACCACCCAGCCTCGGTGACCAGGAGAGTCGGCGCAA...TTGGATGTATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR GCA 90 bp | CACACACACACACACACACACACACACACACACACACACACCCCATACATCCAAAGGTCCCTGCTGCGCTaGCTCTTCCTCCTGCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: HTHTHTHTHTHTHTPYIQRSLLR*LFLLLL Trigger: CAGAAGCAGGAGGAAGAGGCAGCGCAGCAGGGACCT...TTGGATGTATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR GCA 90 bp | CACACACACACCCCATACATCCAAATTCCAGCAGTGATAAACACTTGCTTCTCCACAACCGCAGGTCCCTaGTGCGCTGCCTCTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: HTHTPYIQIPAVINTCFSTTAGP*CAASSS Trigger: GGAGGAAGAGGCAGCGCAGCAGGGACCTGCGGTTGT...GGAGAAGCAAGTGTTTATCACTGCTGGAATTTGGATGTATGGGGTGTGTGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | ATTCCAGCAGTGATAAACACTTGCTTCTCCTCCAGCCTGAGTGACAGCTGGCAGTGTCCTTGTAGTCGCTaGCAGGACTCACAACCGCAG | + |
|
Preference number: 4 (lower is better) Translates to: IPAVINTCFSSSLSDSWQCPCSR*QDSQPQ Trigger: CTGCGGTTGTGAGTCCTGCCAGCGACTACAAGGACA...CTGCCAGCTGTCACTCAGGCTGGAGGAGAAGCAAGTGTTTATCACTGCTGGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | ATTCCAGCAGTGATAAACACTTGCTTCTCCTCCAGCCTGAGTGACAGCTGGCAGGTGTGTCCCGCTTGTTaGCCACAGGAACACAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: IPAVINTCFSSSLSDSWQVCPAC*PQEHSH Trigger: ATGGCTGTGTTCCTGTGGCCAACAAGCGGGACACAC...CTGCCAGCTGTCACTCAGGCTGGAGGAGAAGCAAGTGTTTATCACTGCTGGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | CACACACACACACACACACACACACACACACACACACCCCATACATCCAAATTCGTCACCGAGGCTGGGTaGTTTCTCCATGGAGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: HTHTHTHTHTHTPHTSKFVTEAG*FLHGAQ Trigger: CTGAGCTCCATGGAGAAACCACCCAGCCTCGGTGAC...GAATTTGGATGTATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | ACCCCATACATCCAAATTCCAGCAGTGATAAACACTTGCTTCTCCTCCAGCCTGTTCTCCTCAGCCTTCTaGGGGTCCCACTCCTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: TPYIQIPAVINTCFSSSLFSSAF*GSHSSP Trigger: TGGAGAGGAGTGGGACCCCCAGAAGGCTGAGGAGAA...CAGGCTGGAGGAGAAGCAAGTGTTTATCACTGCTGGAATTTGGATGTATGGGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | ATTCCAGCAGTGATAAACACTTGCTTCTCCTCCAGCCTGAGTGACAGCTGGCAGAGCCATAGGTCTTGTTaGCCTGTAGCATGTGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: IPAVINTCFSSSLSDSWQSHRSC*PVACGL Trigger: CAGCCCACATGCTACAGGCCAACAAGACCTATGGCT...CTGCCAGCTGTCACTCAGGCTGGAGGAGAAGCAAGTGTTTATCACTGCTGGAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR TCA 90 bp | ACACACACACACACACACACACACACACACACCCCATACATCCAAATTCCAGCACAAAGGAGAAGGATGTaGGGCCAGCCACCTCTACCA | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTHTHTPYIQIPAQRRRM*GQPPLP Trigger: TGGTAGAGGTGGCTGGCCTCACATCCTTCTCCTTTG...TGCTGGAATTTGGATGTATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR TCA 90 bp | CACACACACACACACACACACACACACACACACACACACACCCCATACATCCAATCTTCCTCCTGCTTCTaGGCCAGCTCCTTTAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: HTHTHTHTHTHTHTPYIQSSSCF*ASSFSF Trigger: GAAGCTAAAGGAGCTGGCTCAGAAGCAGGAGGAAGA...TTGGATGTATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | CAAACAGTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAAGTTCCCCTGGTCACCGAGGCTaGGTGGTTTCTCCATGGAGC | + |
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Preference number: 4 (lower is better) Translates to: QTVFIQCKVTQAHGEESSPGHRG*VVSPWS Trigger: GCTCCATGGAGAAACCACCCAGCCTCGGTGACCAGG...GGAACTTTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACACTGTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR GCA 90 bp | ATTCCAGCAGTGATAAACACTTGCTTCTCCTCCAGCCTGAGTGACAGCTGGCAGGGCTGCATCTTTGGCTaGTCCTTTGCCAATAAGATG | + |
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Preference number: 4 (lower is better) Translates to: IPAVINTCFSSSLSDSWQGCIFG*SFANKM Trigger: CATCTTATTGGCAAAGGAGCAGCCAAAGATGCAGCC...CTGCCAGCTGTCACTCAGGCTGGAGGAGAAGCAAGTGTTTATCACTGCTGGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | CACACACACACACACCCCATACATCCAAATTCCAGCAGTGATAAACACTTGCTTTGGGTGGTTTCTCCATaGAGCTCAGGATGGAGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: HTHTHPIHPNSSSDKHLLWVVSP*SSGWSP Trigger: TGGGCTCCATCCTGAGCTCCATGGAGAAACCACCCA...AAGCAAGTGTTTATCACTGCTGGAATTTGGATGTATGGGGTGTGTGTGTGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | CAAACAGTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAAGTTCCTCATGGCCTCCTCTATaGACCGTGTGTCCCGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: QTVFIQCKVTQAHGEESSSWPPL*TVCPAC Trigger: ACAAGCGGGACACACGGTCCATAGAGGAGGCCATGA...GGAACTTTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACACTGTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CCA 90 bp | CACACACACACACACACACACACACACACACACACACCCCATACATCCAAATTCACCTGTCCACTGTCCTaGATGAAATCAGACACCTCT | + |
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Preference number: 4 (lower is better) Translates to: HTHTHTHTHTHTPHTSKFTCPLS*MKSDTS Trigger: AGAGGTGTCTGATTTCATCCAGGACAGTGGACAGGT...GAATTTGGATGTATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR GCA 90 bp | CACACACACACACACACACACACACACACACACACACCCCATACATCCAAATTCTTCTGCTGTTTGTCTTaGTCTTGTAGTTTCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: HTHTHTHTHTHTPHTSKFFCCLS*SCSFFR Trigger: TCTGAAGAAACTACAAGAGCAAGACAAACAGCAGAA...GAATTTGGATGTATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR GCA 90 bp | CAAACAGTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAAGTTCCCGAAACTCCACTTTCTaGTGTTTGTCTTGCTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: QTVFIQCKVTQAHGEESSRNSTF*CLSCSC Trigger: ACAAGAGCAAGACAAACAGCAGAAAGTGGAGTTTCG...GGAACTTTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACACTGTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR TCA 90 bp | GTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAAGTTCCAAGGGTATCTTGTTCATAGGCTaGAACTTTTTCTTGACCTGT | + |
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Preference number: 4 (lower is better) Translates to: VFIQCKVTQAHGEESSKGILFIG*NFFLTC Trigger: ACAGGTCAAGAAAAAGTTTCAGCCTATGAACAAGAT...ACCCTTGGAACTTTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS CCA 90 bp | CAGCCTGCTCTCGGGCCTTGCGCCGACTCTCCTGGTCACCGAGGCTaGGTGGTTTCTCCATGGAGCTCAGGATGGAGCCCAGTAGGTCCG | + |
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Preference number: 5 (lower is better) Translates to: QPALGPCADSPGHRG*VVSPWSSGWSPVGP Trigger: CGGACCTACTGGGCTCCATCCTGAGCTCCATGGAGAAACCACCCAGCCTCGGTGACCAGGAGAGTCGGCGCAAGGCCCGAGAGCAGGCTG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018431.13 ENSMUST00000129434.2 |
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| CDS CCA 90 bp | TTCTTCAGACGGGCAGCCTGCTCTCGGGCCTTGCGCCGACTCTCCTaGTCACCGAGGCTGGGTGGTTTCTCCATGGAGCTCAGGATGGAG | + |
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Preference number: 5 (lower is better) Translates to: FFRRAACSRALRRLS*SPRLGGFSMELRME Trigger: CTCCATCCTGAGCTCCATGGAGAAACCACCCAGCCTCGGTGACCAGGAGAGTCGGCGCAAGGCCCGAGAGCAGGCTGCCCGTCTGAAGAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018431.13 ENSMUST00000129434.2 |
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| CDS CCA 90 bp | GTGTGTCCCGCTTGTTGGCCACAGGAACACAGCCATAGGTCTTGTTaGCCTGTAGCATGTGGGCTGCATCTTTGGCTGCTCCTTTGCCAA | + |
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Preference number: 5 (lower is better) Translates to: VCPACWPQEHSHRSC*PVACGLHLWLLLCQ Trigger: TTGGCAAAGGAGCAGCCAAAGATGCAGCCCACATGCTACAGGCCAACAAGACCTATGGCTGTGTTCCTGTGGCCAACAAGCGGGACACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CAA 90 bp | CTGGGTCAAACAGTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAGCCTGCTCTCGGGCCTaGCGCCGACTCTCCTGGTCA | + |
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Preference number: 5 (lower is better) Translates to: LGQTVFIQCKVTQAHGEEACSRA*RRLSWS Trigger: TGACCAGGAGAGTCGGCGCAAGGCCCGAGAGCAGGC...TTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACACTGTTTGACCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS GCA 90 bp | TGTCCACTGTCCCTTTTCCGAAACTCCACTTTCTGCTGTTTGTCTTaGTCTTGTAGTTTCTTCAGACGGGCAGCCTGCTCTCGGGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: CPLSLFRNSTFCCLS*SCSFFRRAACSRAL Trigger: CAAGGCCCGAGAGCAGGCTGCCCGTCTGAAGAAACTACAAGAGCAAGACAAACAGCAGAAAGTGGAGTTTCGGAAAAGGGACAGTGGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129434.2 |
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| CDS-3UTR CAA 90 bp | ATTCCAGCAGTGATAAACACTTGCTTCTCCTCCAGCCTGAGTGACAGCTGGCAGTGCCGCAGGCGTTTCTaGGCTCTGATCTCATTCATG | + |
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Preference number: 5 (lower is better) Translates to: IPAVINTCFSSSLSDSWQCRRRF*ALISFM Trigger: CATGAATGAGATCAGAGCCAAGAAACGCCTGCGGCA...CTGCCAGCTGTCACTCAGGCTGGAGGAGAAGCAAGTGTTTATCACTGCTGGAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CAA 90 bp | ATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAAGTTCCAAGGGTAATAGACGTGTGTCCCGCTTGTaGGCCACAGGAACACAGCCA | + |
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Preference number: 5 (lower is better) Translates to: IQCKVTQAHGEESSKGNRRVSRL*ATGTQP Trigger: TGGCTGTGTTCCTGTGGCCAACAAGCGGGACACACG...TCTATTACCCTTGGAACTTTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS GCA 90 bp | TCTTTCTCCATCCTTTTCCGAAACTCCACTTTCTGCTGTTTGTCTTaGTCTTGTAGTTTCTTCAGACGGGCAGCCTGCTCTCGGGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: SFSILFRNSTFCCLS*SCSFFRRAACSRAL Trigger: CAAGGCCCGAGAGCAGGCTGCCCGTCTGAAGAAACTACAAGAGCAAGACAAACAGCAGAAAGTGGAGTTTCGGAAAAGGATGGAGAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CAA 90 bp | CTGGGTCAAACAGTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAATGTGGGCTGCATCTTaGGCTGCTCCTTTGCCAATA | + |
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Preference number: 5 (lower is better) Translates to: LGQTVFIQCKVTQAHGEEMWAAS*AAPLPI Trigger: TATTGGCAAAGGAGCAGCCAAAGATGCAGCCCACAT...TTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACACTGTTTGACCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CAA 90 bp | CACACACACACACACACACACACACACACACACACACCCCATACATCCAAATTCTCCACTTTCTGCTGTTaGTCTTGCTCTTGTAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: HTHTHTHTHTHTPHTSKFSTFCC*SCSCSF Trigger: GAAACTACAAGAGCAAGACAAACAGCAGAAAGTGGA...GAATTTGGATGTATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS-3UTR CAA 90 bp | GTGTTTATTCAATGTAAAGTAACCCAGGCCCACGGGGAAGAAAGTTCCAAGGGTTCTTTGGCTGCTCCTTaGCCAATAAGATGGCTATAC | + |
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Preference number: 5 (lower is better) Translates to: VFIQCKVTQAHGEESSKGSLAAP*PIRWLY Trigger: GTATAGCCATCTTATTGGCAAAGGAGCAGCCAAAGA...ACCCTTGGAACTTTCTTCCCCGTGGGCCTGGGTTACTTTACATTGAATAAACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS TCA 90 bp | TCTACCACATCATGTAGTATGCTCCGCTCTATCTTGTTCATAGGCTaGAACTTTTTCTTGACCTGTCCACTGTCCCTTTTCCGAAACTCC | + |
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Preference number: 5 (lower is better) Translates to: STTSCSMLRSILFIG*NFFLTCPLSLFRNS Trigger: GGAGTTTCGGAAAAGGGACAGTGGACAGGTCAAGAAAAAGTTTCAGCCTATGAACAAGATAGAGCGGAGCATACTACATGATGTGGTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000129434.2 |
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| CDS TCA 90 bp | TCTACCACATCATGTAGTATGCTCCGCTCTATCTTGTTCATAGGCTaGAACTTTTTCTTGACCTGTCCACTGTCCTGGATGAAATCAGAC | + |
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Preference number: 5 (lower is better) Translates to: STTSCSMLRSILFIG*NFFLTCPLSWMKSD Trigger: GTCTGATTTCATCCAGGACAGTGGACAGGTCAAGAAAAAGTTTCAGCCTATGAACAAGATAGAGCGGAGCATACTACATGATGTGGTAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS CCA 72 bp | CGGGCAGCCTGCTCTCGGGCCTTGCGCCGACTCTCCTaGTCACCGAGGCTGGGTGGTTTCTCCATGGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: RAACSRALRRLS*SPRLGGFSMEL Trigger: GAGCTCCATGGAGAAACCACCCAGCCTCGGTGACCAGGAGAGTCGGCGCAAGGCCCGAGAGCAGGCTGCCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018431.13 ENSMUST00000129434.2 |
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| CDS CCA 72 bp | CTCGGGCCTTGCGCCGACTCTCCTGGTCACCGAGGCTaGGTGGTTTCTCCATGGAGCTCAGGATGGAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: LGPCADSPGHRG*VVSPWSSGWSP Trigger: TGGGCTCCATCCTGAGCTCCATGGAGAAACCACCCAGCCTCGGTGACCAGGAGAGTCGGCGCAAGGCCCGAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018431.13 ENSMUST00000129434.2 |
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| CDS CCA 72 bp | TCATGGCCTCCTCTATGGACCGTGTGTCCCGCTTGTTaGCCACAGGAACACAGCCATAGGTCTTGTTGGCCT | + |
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Preference number: 6 (lower is better) Translates to: SWPPLWTVCPAC*PQEHSHRSCWP Trigger: AGGCCAACAAGACCTATGGCTGTGTTCCTGTGGCCAACAAGCGGGACACACGGTCCATAGAGGAGGCCATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS CAA 72 bp | GTTGGCAACTCTTCACCACTCTGCCGCAGGCGTTTCTaGGCTCTGATCTCATTCATGGCCTCCTCTATGGAC | + |
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Preference number: 6 (lower is better) Translates to: VGNSSPLCRRRF*ALISFMASSMD Trigger: GTCCATAGAGGAGGCCATGAATGAGATCAGAGCCAAGAAACGCCTGCGGCAGAGTGGTGAAGAGTTGCCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS GCA 72 bp | TCCCTTTTCCGAAACTCCACTTTCTGCTGTTTGTCTTaGTCTTGTAGTTTCTTCAGACGGGCAGCCTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: SLFRNSTFCCLS*SCSFFRRAACS Trigger: AGAGCAGGCTGCCCGTCTGAAGAAACTACAAGAGCAAGACAAACAGCAGAAAGTGGAGTTTCGGAAAAGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129434.2 |
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| CDS GCA 72 bp | ATCCTTTTCCGAAACTCCACTTTCTGCTGTTTGTCTTaGTCTTGTAGTTTCTTCAGACGGGCAGCCTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: ILFRNSTFCCLS*SCSFFRRAACS Trigger: AGAGCAGGCTGCCCGTCTGAAGAAACTACAAGAGCAAGACAAACAGCAGAAAGTGGAGTTTCGGAAAAGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS TCA 72 bp | TCATGTAGTATGCTCCGCTCTATCTTGTTCATAGGCTaGAACTTTTTCTTGACCTGTCCACTGTCCTGGATG | + |
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Preference number: 6 (lower is better) Translates to: SCSMLRSILFIG*NFFLTCPLSWM Trigger: CATCCAGGACAGTGGACAGGTCAAGAAAAAGTTTCAGCCTATGAACAAGATAGAGCGGAGCATACTACATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018431.13 |
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| CDS TCA 72 bp | TCATGTAGTATGCTCCGCTCTATCTTGTTCATAGGCTaGAACTTTTTCTTGACCTGTCCACTGTCCCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: SCSMLRSILFIG*NFFLTCPLSLF Trigger: GAAAAGGGACAGTGGACAGGTCAAGAAAAAGTTTCAGCCTATGAACAAGATAGAGCGGAGCATACTACATGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000129434.2 |
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