Pregenerated sensors for SPAG4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038180Ensembl transcript IDs: ENSMUST00000038860.12, ENSMUST00000131144.8, ENSMUST00000137966.2, ENSMUST00000138178.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCACCAGAGTGCTGCCAGAAAGATGCTCAGGAGCGACACAGCAGTaGACAGGAAGCGGATGGAGCAGATTTCCCTCAGATCCAGGATCG | + |
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Preference number: 1 (lower is better) Translates to: PTRVLPERCSGATQQ*TGSGWSRFPSDPGS Trigger: CGATCCTGGATCTGAGGGAAATCTGCTCCATCCGCTTCCTGTTCACTGCTGTGTCGCTCCTGAGCATCTTTCTGGCAGCACTCTGGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131144.8 |
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| 3UTR TCA 90 bp | CCCACCAGAGTGCTGCCAGAAAGATGCTCAGGAGCGACACAGCAGTaGACAGGAAGCGGATGGAGCAGATTTCCTCAGGAAGCTCTTGGA | + |
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Preference number: 1 (lower is better) Translates to: PTRVLPERCSGATQQ*TGSGWSRFPQEALG Trigger: TCCAAGAGCTTCCTGAGGAAATCTGCTCCATCCGCTTCCTGTTCACTGCTGTGTCGCTCCTGAGCATCTTTCTGGCAGCACTCTGGTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138178.8 |
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| 3UTR GCA 90 bp | GATTTCCTCAGGAAGCTCTTGGACACCCTCGGGGTAGGCATCTCCTaGCTCAGATCCAGGATCGGGAGAAGGTTGAGTTGTTCCTCCAAA | + |
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Preference number: 1 (lower is better) Translates to: DFLRKLLDTLGVGIS*LRSRIGRRLSCSSK Trigger: TTTGGAGGAACAACTCAACCTTCTCCCGATCCTGGATCTGAGGCAGGAGATGCCTACCCCGAGGGTGTCCAAGAGCTTCCTGAGGAAATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138178.8 |
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| 3UTR-3UTR CAA 90 bp | CGTAGGTTCGTTCTCCAAAGGAGGGATCAGGTACAGGAGCCCCCACCAGAGTGCTTCCTCAGGAAGCTCTaGGACACCCTCGGGGTAGGC | + |
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Preference number: 3 (lower is better) Translates to: RRFVLQRRDQVQEPPPECFLRKL*DTLGVG Trigger: GCCTACCCCGAGGGTGTCCAAGAGCTTCCTGAGGAA...GCACTCTGGTGGGGGCTCCTGTACCTGATCCCTCCTTTGGAGAACGAACCTACG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000138178.8 |
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| 3UTR CCA 72 bp | TGCTGCAGTTGCTGGCCCTGGGAATGCACGCGGTGGTaGTATTGGCTTAGAGTCAGCATCTCCGTAGGTTCG | + |
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Preference number: 3 (lower is better) Translates to: CCSCWPWECTRW*YWLRVSISVGS Trigger: CGAACCTACGGAGATGCTGACTCTAAGCCAATACCACCACCGCGTGCATTCCCAGGGCCAGCAACTGCAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131144.8 |
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| 3UTR GCA 72 bp | AGGAAGCTCTTGGACACCCTCGGGGTAGGCATCTCCTaGCTCAGATCCAGGATCGGGAGAAGGTTGAGTTGT | + |
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Preference number: 3 (lower is better) Translates to: RKLLDTLGVGIS*LRSRIGRRLSC Trigger: ACAACTCAACCTTCTCCCGATCCTGGATCTGAGGCAGGAGATGCCTACCCCGAGGGTGTCCAAGAGCTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138178.8 |
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| 3UTR GCA 72 bp | TGGAGTTTATTCAGTTCTGCCTGGAGCTGCTGCAGTTaGTGGCCCTGGGAATGCACGCGGTGGTGGTATTGG | + |
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Preference number: 3 (lower is better) Translates to: WSLFSSAWSCCS*WPWECTRWWYW Trigger: CCAATACCACCACCGCGTGCATTCCCAGGGCCAGCAACTGCAGCAGCTCCAGGCAGAACTGAATAAACTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131144.8 |
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| 3UTR CCA 72 bp | AGTTGCTGGCCCTGGGAATGCACGCGGTGGTGGTATTaGCTTAGAGTCAGCATCTCCGTAGGTTCGTTCTCC | + |
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Preference number: 3 (lower is better) Translates to: SCWPWECTRWWY*LRVSISVGSFS Trigger: GGAGAACGAACCTACGGAGATGCTGACTCTAAGCCAATACCACCACCGCGTGCATTCCCAGGGCCAGCAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131144.8 |
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| CDS-3UTR GCA 90 bp | GAACAGGAAGCGGATGGAGCAGATTTCCTCAGGAAGCTCTTGGACACCCTCGGGAGCCCCGGGCCCTTCTaGCCTCGGGCTCCCCGAGCT | + |
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Preference number: 4 (lower is better) Translates to: EQEADGADFLRKLLDTLGSPGPF*PRAPRA Trigger: AGCTCGGGGAGCCCGAGGGCAGAAGGGCCCGGGGCT...CCCGAGGGTGTCCAAGAGCTTCCTGAGGAAATCTGCTCCATCCGCTTCCTGTTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138178.8 |
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| CDS-3UTR GCA 90 bp | AGCTGCTGCAGTTGCTGGCCCTGGGAATGCACGCGGTGGTGGTATTGGCTTAGACGGCCGAGAGCTTCCTaGCCATGTGTCTCCTCCGGG | + |
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Preference number: 4 (lower is better) Translates to: SCCSCWPWECTRWWYWLRRPRAS*PCVSSG Trigger: CCCGGAGGAGACACATGGGCAGGAAGCTCTCGGCCG...TCTAAGCCAATACCACCACCGCGTGCATTCCCAGGGCCAGCAACTGCAGCAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131144.8 |
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| CDS-3UTR GCA 90 bp | CATCTCCGTAGGTTCGTTCTCCAAAGGAGGGATCAGGTACAGGAGCCCCCACCAGCGCCACAGGCGGTCTaGCCATTGTGGCTCCGAGGC | + |
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Preference number: 4 (lower is better) Translates to: HLRRFVLQRRDQVQEPPPAPQAV*PLWLRG Trigger: GCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGC...TGGTGGGGGCTCCTGTACCTGATCCCTCCTTTGGAGAACGAACCTACGGAGATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000131144.8 |
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| CDS-3UTR CCA 90 bp | CGTAGGTTCGTTCTCCAAAGGAGGGATCAGGTACAGGAGCCCCCACCAGAGTGCGCGGTCTGCCCATTGTaGCTCCGAGGCGCCAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: RRFVLQRRDQVQEPPPECAVCPL*LRGASF Trigger: GAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGC...GCACTCTGGTGGGGGCTCCTGTACCTGATCCCTCCTTTGGAGAACGAACCTACG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000131144.8 ENSMUST00000138178.8 |
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| CDS-3UTR CCA 90 bp | CCCTGGGAATGCACGCGGTGGTGGTATTGGCTTAGAGTCAGCATCTCCGTAGGTGCGGTCTGCCCATTGTaGCTCCGAGGCGCCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: PWECTRWWYWLRVSISVGAVCPL*LRGASF Trigger: GAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGC...ACCTACGGAGATGCTGACTCTAAGCCAATACCACCACCGCGTGCATTCCCAGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131144.8 |
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| CDS-3UTR GCA 90 bp | GGCATCTCCTGCCTCAGATCCAGGATCGGGAGAAGGTTGAGTTGTTCCTCCAAAGCGCCACAGGCGGTCTaGCCATTGTGGCTCCGAGGC | + |
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Preference number: 4 (lower is better) Translates to: GISCLRSRIGRRLSCSSKAPQAV*PLWLRG Trigger: GCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGC...TTTGGAGGAACAACTCAACCTTCTCCCGATCCTGGATCTGAGGCAGGAGATGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138178.8 |
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| CDS-3UTR GCA 90 bp | AGCGACACAGCAGTGAACAGGAAGCGGATGGAGCAGATTTCCTCAGGAAGCTCTCGGCCGAGAGCTTCCTaGCCATGTGTCTCCTCCGGG | + |
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Preference number: 4 (lower is better) Translates to: SDTAVNRKRMEQISSGSSRPRAS*PCVSSG Trigger: CCCGGAGGAGACACATGGGCAGGAAGCTCTCGGCCG...AGAGCTTCCTGAGGAAATCTGCTCCATCCGCTTCCTGTTCACTGCTGTGTCGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138178.8 |
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| 3UTR CAA 72 bp | CAGGAAGCGGATGGAGCAGATTTCCTCAGGAAGCTCTaGGACACCCTCGGGGTAGGCATCTCCTGCCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: QEADGADFLRKL*DTLGVGISCLR Trigger: TCTGAGGCAGGAGATGCCTACCCCGAGGGTGTCCAAGAGCTTCCTGAGGAAATCTGCTCCATCCGCTTCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138178.8 |
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| CDS GCA 90 bp | CTGGGCTTAAGGCGGGCTCACCACAGCTCGAGCCCCGGGCCCTTCTaGCCTCGGGCTCCCCGAGCTCCGGCCCAGCGGACCGGCGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: LGLRRAHHSSSPGPF*PRAPRAPAQRTGAH Trigger: ATGGGCGCCGGTCCGCTGGGCCGGAGCTCGGGGAGCCCGAGGGCAGAAGGGCCCGGGGCTCGAGCTGTGGTGAGCCCGCCTTAAGCCCAG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000138178.8 |
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| CDS GCA 90 bp | GGTTCCGAGGCCCCGCCCCTCACGGTTGCCGCGCCACAGGCGGTCTaGCCATTGTGGCTCCGAGGCGCCAGCTTCGGCCGAGAGCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: GSEAPPLTVAAPQAV*PLWLRGASFGRELP Trigger: AGGAAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCGTGAGGGGCGGGGCCTCGGAACC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CCA 90 bp | GCCCCGCCCCTCACGGTTGCCGCGCCACAGGCGGTCTGCCCATTGTaGCTCCGAGGCGCCAGCTTCGGCCGAGAGCTTCCTGCCCATGTG | + |
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Preference number: 5 (lower is better) Translates to: APPLTVAAPQAVCPL*LRGASFGRELPAHV Trigger: CACATGGGCAGGAAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCGTGAGGGGCGGGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS GCA 90 bp | AACTACAGAAGATCCAGACGGTTCCGAGGCCCCGCCCCTCACGGTTaGCGCGCCACAGGCGGTCTGCCCATTGTGGCTCCGAGGCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: NYRRSRRFRGPAPHG*RATGGLPIVAPRRQ Trigger: CTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCGTGAGGGGCGGGGCCTCGGAACCGTCTGGATCTTCTGTAGTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CCA 90 bp | AGATCCAGACGGTTGGTTGCCGCGCCACAGGCGGTCTGCCCATTGTaGCTCCGAGGCGCCAGCTTCGGCCGAGAGCTTCCTGCCCATGTG | + |
|
Preference number: 5 (lower is better) Translates to: RSRRLVAAPQAVCPL*LRGASFGRELPAHV Trigger: CACATGGGCAGGAAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCAACCGTCTGGATCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131144.8 ENSMUST00000138178.8 |
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| CDS CCA 90 bp | CATCAGCTTGGAGCCCATAGACTGCAAAGTCCCGAGGCGCGCTGCTaGCCCCTCCGGTGTGTGCCACAGTGGGTGGAGGATGCTGCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: HQLGAHRLQSPEARC*PLRCVPQWVEDAAG Trigger: CCCTGCAGCATCCTCCACCCACTGTGGCACACACCGGAGGGGCCAGCAGCGCGCCTCGGGACTTTGCAGTCTATGGGCTCCAAGCTGATG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS GCA 90 bp | CGTCATCAGCTTGGAGCCCATAGACTGCAAAGTCCCGAGGCGCGCTaGTGGCCCCTCCGGTGTGTGCCACAGTGGGTGGAGGATGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: RHQLGAHRLQSPEAR*WPLRCVPQWVEDAA Trigger: TGCAGCATCCTCCACCCACTGTGGCACACACCGGAGGGGCCAGCAGCGCGCCTCGGGACTTTGCAGTCTATGGGCTCCAAGCTGATGACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS-3UTR CAA 90 bp | CTCCGTAGGTTCGTTCTCCAAAGGAGGGATCAGGTACAGGAGCCCCCACCAGAGCAGGCGGTCTGCCCATaGTGGCTCCGAGGCGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LRRFVLQRRDQVQEPPPEQAVCP*WLRGAS Trigger: GCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTG...CTCTGGTGGGGGCTCCTGTACCTGATCCCTCCTTTGGAGAACGAACCTACGGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000131144.8 |
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| CDS-3UTR CAA 90 bp | GTTCGTTCTCCAAAGGAGGGATCAGGTACAGGAGCCCCCACCAGAGTGCTGCCACAGGCGGTCTGCCCATaGTGGCTCCGAGGCGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: VRSPKEGSGTGAPTRVLPQAVCP*WLRGAS Trigger: GCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTG...TGGCAGCACTCTGGTGGGGGCTCCTGTACCTGATCCCTCCTTTGGAGAACGAAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000131144.8 ENSMUST00000138178.8 |
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| CDS GCA 90 bp | CCCCAAGAACACTTCAGTCTCGTCATCAGCTTGGAGCCCATAGACTaGAAAGTCCCGAGGCGCGCTGCTGGCCCCTCCGGTGTGTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: PQEHFSLVISLEPID*KVPRRAAGPSGVCH Trigger: GTGGCACACACCGGAGGGGCCAGCAGCGCGCCTCGGGACTTTGCAGTCTATGGGCTCCAAGCTGATGACGAGACTGAAGTGTTCTTGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS TCA 90 bp | TGGCCCCTCCGGTGTGTGCCACAGTGGGTGGAGGATGCTGCAGGGTaGTGTCGCTTAACTGCACATGACCTGGCAGTCGGATCACCACCT | + |
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Preference number: 5 (lower is better) Translates to: WPLRCVPQWVEDAAG*CRLTAHDLAVGSPP Trigger: AGGTGGTGATCCGACTGCCAGGTCATGTGCAGTTAAGCGACATCACCCTGCAGCATCCTCCACCCACTGTGGCACACACCGGAGGGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS TCA 90 bp | CAGACCAGCCCATCGACTGCCAGGGATAACACCATGCTCAGCACCTaGAAGAGGAGGCTCAGGAAGCTCTTGGACACCCTCGGGGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: QTSPSTARDNTMLST*KRRLRKLLDTLGVG Trigger: GCCTACCCCGAGGGTGTCCAAGAGCTTCCTGAGCCTCCTCTTTCAGGTGCTGAGCATGGTGTTATCCCTGGCAGTCGATGGGCTGGTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS CCA 90 bp | GCACGAACGCTGGACACCTCCTTGTGGAGTTTATTCAGTTCTGCCTaGAGCTGCTGCAGTTGCTGGCCCTGGGAATGCACGCGGTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: ARTLDTSLWSLFSSA*SCCSCWPWECTRWW Trigger: CCACCACCGCGTGCATTCCCAGGGCCAGCAACTGCAGCAGCTCCAGGCAGAACTGAATAAACTCCACAAGGAGGTGTCCAGCGTTCGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS GCA 90 bp | CCCTGCACACACAGACCAGCCCATCGACTGCCAGGGATAACACCATaGTCAGCACCTGAAAGAGGAGGCTCAGGAAGCTCTTGGACACCC | + |
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Preference number: 5 (lower is better) Translates to: PCTHRPAHRLPGITP*SAPERGGSGSSWTP Trigger: GGGTGTCCAAGAGCTTCCTGAGCCTCCTCTTTCAGGTGCTGAGCATGGTGTTATCCCTGGCAGTCGATGGGCTGGTCTGTGTGTGCAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS CCA 90 bp | CCGAAGTCGCGCTGTGGGAACTATTGCTGTTCTCGCTGTAGAAGTTaGGTGTGTGATTATGAGAGGATGCGGCCGAGCCTGAGCGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: PKSRCGNYCCSRCRS*VCDYERMRPSLSGG Trigger: GCCCCCGCTCAGGCTCGGCCGCATCCTCTCATAATCACACACCCAACTTCTACAGCGAGAACAGCAATAGTTCCCACAGCGCGACTTCGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS TCA 90 bp | CCCACCAGAGTGCTGCCAGAAAGATGCTCAGGAGCGACACAGCAGTaGACAGGAAGCGGATGGAGCAGATTTCCCTGCACACACAGACCA | + |
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Preference number: 5 (lower is better) Translates to: PTRVLPERCSGATQQ*TGSGWSRFPCTHRP Trigger: TGGTCTGTGTGTGCAGGGAAATCTGCTCCATCCGCTTCCTGTTCACTGCTGTGTCGCTCCTGAGCATCTTTCTGGCAGCACTCTGGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS GCA 90 bp | AGGAGGCTCAGGAAGCTCTTGGACACCCTCGGGGTAGGCATCTCCTaGCTCAGATCCAGGATCGGGAGAAGGTTGAGTTGTTCCTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: RRLRKLLDTLGVGIS*LRSRIGRRLSCSSK Trigger: TTTGGAGGAACAACTCAACCTTCTCCCGATCCTGGATCTGAGGCAGGAGATGCCTACCCCGAGGGTGTCCAAGAGCTTCCTGAGCCTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS GCA 90 bp | CCAGGTCGATGGAGGCTCCCACAGAGCTCAGTGCATAGTCAGGTTTaGGCACGAAGTCTTCATTCAGCCTCTGGAACACGAGCTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: PGRWRLPQSSVHSQV*ARSLHSASGTRAWP Trigger: TGGCCAAGCTCGTGTTCCAGAGGCTGAATGAAGACTTCGTGCGCAAACCTGACTATGCACTGAGCTCTGTGGGAGCCTCCATCGACCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS CCA 90 bp | CAGTGTTCTGGTCCTCGTAGTCACTGGACGTCTTCTCCAGGTCGATaGAGGCTCCCACAGAGCTCAGTGCATAGTCAGGTTTGCGCACGA | + |
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Preference number: 5 (lower is better) Translates to: QCSGPRSHWTSSPGR*RLPQSSVHSQVCAR Trigger: TCGTGCGCAAACCTGACTATGCACTGAGCTCTGTGGGAGCCTCCATCGACCTGGAGAAGACGTCCAGTGACTACGAGGACCAGAACACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS CCA 90 bp | TCAAGCGGTTCCAGAAGTAGGCAGTGTTCTGGTCCTCGTAGTCACTaGACGTCTTCTCCAGGTCGATGGAGGCTCCCACAGAGCTCAGTG | + |
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Preference number: 5 (lower is better) Translates to: SSGSRSRQCSGPRSH*TSSPGRWRLPQSSV Trigger: CACTGAGCTCTGTGGGAGCCTCCATCGACCTGGAGAAGACGTCCAGTGACTACGAGGACCAGAACACTGCCTACTTCTGGAACCGCTTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS GCA 90 bp | ACCGGCGCCCATTGCTGTCCCCCGAAGTCGCGCTGTGGGAACTATTaGTGTTCTCGCTGTAGAAGTTGGGTGTGTGATTATGAGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: TGAHCCPPKSRCGNY*CSRCRSWVCDYERM Trigger: CATCCTCTCATAATCACACACCCAACTTCTACAGCGAGAACAGCAATAGTTCCCACAGCGCGACTTCGGGGGACAGCAATGGGCGCCGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS TCA 90 bp | ACTCTGAGGTCCGCACACCATGAGCACGGACGCGATATAAGCACGTaGAGCGGGGATGGCCCCAGTTGCTTAGAATCTGAATCTTCACCT | + |
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Preference number: 5 (lower is better) Translates to: TLRSAHHEHGRDIST*SGDGPSCLESESSP Trigger: AGGTGAAGATTCAGATTCTAAGCAACTGGGGCCATCCCCGCTTCACGTGCTTATATCGCGTCCGTGCTCATGGTGTGCGGACCTCAGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS TCA 90 bp | ACAGTGGGTGGAGGATGCTGCAGGGTGATGTCGCTTAACTGCACATaGCCTGGCAGTCGGATCACCACCTGGCCTTTATCACCTTCAAAA | + |
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Preference number: 5 (lower is better) Translates to: TVGGGCCRVMSLNCT*PGSRITTWPLSPSK Trigger: TTTTGAAGGTGATAAAGGCCAGGTGGTGATCCGACTGCCAGGTCATGTGCAGTTAAGCGACATCACCCTGCAGCATCCTCCACCCACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS GCA 72 bp | AGGCGGGCTCACCACAGCTCGAGCCCCGGGCCCTTCTaGCCTCGGGCTCCCCGAGCTCCGGCCCAGCGGACC | + |
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Preference number: 6 (lower is better) Translates to: RRAHHSSSPGPF*PRAPRAPAQRT Trigger: GGTCCGCTGGGCCGGAGCTCGGGGAGCCCGAGGGCAGAAGGGCCCGGGGCTCGAGCTGTGGTGAGCCCGCCT 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000138178.8 |
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| CDS GCA 72 bp | GCCCCGCCCCTCACGGTTGCCGCGCCACAGGCGGTCTaGCCATTGTGGCTCCGAGGCGCCAGCTTCGGCCGA | + |
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Preference number: 6 (lower is better) Translates to: APPLTVAAPQAV*PLWLRGASFGR Trigger: TCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCGTGAGGGGCGGGGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CAA 90 bp | GAGGCCCCGCCCCTCACGGTTGCCGCGCCACAGGCGGTCTGCCCATaGTGGCTCCGAGGCGCCAGCTTCGGCCGAGAGCTTCCTGCCCAT | + |
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Preference number: 6 (lower is better) Translates to: EAPPLTVAAPQAVCP*WLRGASFGRELPAH Trigger: ATGGGCAGGAAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCGTGAGGGGCGGGGCCTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS GCA 72 bp | GCTCCCCGAGCTCCGGCCCAGCGGACCGGCGCCCATTaGTGTCCCCCGAAGTCGCGCTGTGGGAACTATTGC | + |
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Preference number: 6 (lower is better) Translates to: APRAPAQRTGAH*CPPKSRCGNYC Trigger: GCAATAGTTCCCACAGCGCGACTTCGGGGGACAGCAATGGGCGCCGGTCCGCTGGGCCGGAGCTCGGGGAGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS GCA 72 bp | AGATCCAGACGGTTCCGAGGCCCCGCCCCTCACGGTTaGCGCGCCACAGGCGGTCTGCCCATTGTGGCTCCG | + |
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Preference number: 6 (lower is better) Translates to: RSRRFRGPAPHG*RATGGLPIVAP Trigger: CGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCGTGAGGGGCGGGGCCTCGGAACCGTCTGGATCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CAA 72 bp | GGCTCCCCGAGCTCCGGCCCAGCGGACCGGCGCCCATaGCTGTCCCCCGAAGTCGCGCTGTGGGAACTATTG | + |
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Preference number: 6 (lower is better) Translates to: GSPSSGPADRRP*LSPEVALWELL Trigger: CAATAGTTCCCACAGCGCGACTTCGGGGGACAGCAATGGGCGCCGGTCCGCTGGGCCGGAGCTCGGGGAGCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CAA 72 bp | CCCCTCACGGTTGCCGCGCCACAGGCGGTCTGCCCATaGTGGCTCCGAGGCGCCAGCTTCGGCCGAGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: PLTVAAPQAVCP*WLRGASFGREL Trigger: AAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCGTGAGGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CAA 90 bp | CTGCCCTCGGGCTCCCCGAGCTCCGGCCCAGCGGACCGGCGCCCATaGCTGTCCCCCGAAGTCGCGCTGTGGGAACTATTGCTGTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: LPSGSPSSGPADRRP*LSPEVALWELLLFS Trigger: CGAGAACAGCAATAGTTCCCACAGCGCGACTTCGGGGGACAGCAATGGGCGCCGGTCCGCTGGGCCGGAGCTCGGGGAGCCCGAGGGCAG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CCA 72 bp | CTCACGGTTGCCGCGCCACAGGCGGTCTGCCCATTGTaGCTCCGAGGCGCCAGCTTCGGCCGAGAGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: LTVAAPQAVCPL*LRGASFGRELP Trigger: AGGAAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCGTGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CCA 72 bp | CGGTTGGTTGCCGCGCCACAGGCGGTCTGCCCATTGTaGCTCCGAGGCGCCAGCTTCGGCCGAGAGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: RLVAAPQAVCPL*LRGASFGRELP Trigger: AGGAAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCAACCG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131144.8 ENSMUST00000138178.8 |
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| CDS GCA 72 bp | AGATCCAGACGGTTGGTTGCCGCGCCACAGGCGGTCTaGCCATTGTGGCTCCGAGGCGCCAGCTTCGGCCGA | + |
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Preference number: 6 (lower is better) Translates to: RSRRLVAAPQAV*PLWLRGASFGR Trigger: TCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCAACCGTCTGGATCT 68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131144.8 ENSMUST00000138178.8 |
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| CDS CAA 72 bp | AGACGGTTGGTTGCCGCGCCACAGGCGGTCTGCCCATaGTGGCTCCGAGGCGCCAGCTTCGGCCGAGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: RRLVAAPQAVCP*WLRGASFGREL Trigger: AAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCAACCGTCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131144.8 ENSMUST00000138178.8 |
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| CDS CAA 90 bp | AAACTACAGAAGATCCAGACGGTTCCGAGGCCCCGCCCCTCACGGTaGCCGCGCCACAGGCGGTCTGCCCATTGTGGCTCCGAGGCGCCA | + |
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Preference number: 6 (lower is better) Translates to: KLQKIQTVPRPRPSR*PRHRRSAHCGSEAP Trigger: TGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCGTGAGGGGCGGGGCCTCGGAACCGTCTGGATCTTCTGTAGTTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS GCA 72 bp | CTTGGAGCCCATAGACTGCAAAGTCCCGAGGCGCGCTaGTGGCCCCTCCGGTGTGTGCCACAGTGGGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: LGAHRLQSPEAR*WPLRCVPQWVE Trigger: CTCCACCCACTGTGGCACACACCGGAGGGGCCAGCAGCGCGCCTCGGGACTTTGCAGTCTATGGGCTCCAAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CCA 72 bp | GGAGCCCATAGACTGCAAAGTCCCGAGGCGCGCTGCTaGCCCCTCCGGTGTGTGCCACAGTGGGTGGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: GAHRLQSPEARC*PLRCVPQWVED Trigger: ATCCTCCACCCACTGTGGCACACACCGGAGGGGCCAGCAGCGCGCCTCGGGACTTTGCAGTCTATGGGCTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CAA 90 bp | AGAAGATCCAGACGGTTGGTTGCCGCGCCACAGGCGGTCTGCCCATaGTGGCTCCGAGGCGCCAGCTTCGGCCGAGAGCTTCCTGCCCAT | + |
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Preference number: 6 (lower is better) Translates to: RRSRRLVAAPQAVCP*WLRGASFGRELPAH Trigger: ATGGGCAGGAAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCACAATGGGCAGACCGCCTGTGGCGCGGCAACCAACCGTCTGGATCTTCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131144.8 ENSMUST00000138178.8 |
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| CDS GCA 72 bp | GTGGCTCCGAGGCGCCAGCTTCGGCCGAGAGCTTCCTaGCCATGTGTCTCCTCCGGGCATTCCTGGGCTTNN | + |
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Preference number: 6 (lower is better) Translates to: VAPRRQLRPRAS*PCVSSGHSWAX Trigger: NNAAGCCCAGGAATGCCCGGAGGAGACACATGGGCAGGAAGCTCTCGGCCGAAGCTGGCGCCTCGGAGCCAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131144.8 |
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| CDS TCA 72 bp | CGGTGTGTGCCACAGTGGGTGGAGGATGCTGCAGGGTaGTGTCGCTTAACTGCACATGACCTGGCAGTCGGA | + |
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Preference number: 6 (lower is better) Translates to: RCVPQWVEDAAG*CRLTAHDLAVG Trigger: TCCGACTGCCAGGTCATGTGCAGTTAAGCGACATCACCCTGCAGCATCCTCCACCCACTGTGGCACACACCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS TCA 72 bp | GCATTATCGTCTGCCCACTCTGAGGTCCGCACACCATaGGCACGGACGCGATATAAGCACGTGAAGCGGGGA | + |
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Preference number: 6 (lower is better) Translates to: ALSSAHSEVRTP*ARTRYKHVKRG Trigger: TCCCCGCTTCACGTGCTTATATCGCGTCCGTGCTCATGGTGTGCGGACCTCAGAGTGGGCAGACGATAATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CCA 72 bp | GCACGAAGTCTTCATTCAGCCTCTGGAACACGAGCTTaGCCACTCTCTCACTGTGGGCTGCACGAACGCTGG | + |
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Preference number: 6 (lower is better) Translates to: ARSLHSASGTRA*PLSHCGLHERW Trigger: CCAGCGTTCGTGCAGCCCACAGTGAGAGAGTGGCCAAGCTCGTGTTCCAGAGGCTGAATGAAGACTTCGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS GCA 72 bp | CACAGACCAGCCCATCGACTGCCAGGGATAACACCATaGTCAGCACCTGAAAGAGGAGGCTCAGGAAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: HRPAHRLPGITP*SAPERGGSGSS Trigger: AGAGCTTCCTGAGCCTCCTCTTTCAGGTGCTGAGCATGGTGTTATCCCTGGCAGTCGATGGGCTGGTCTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS CCA 72 bp | TCCAGAAGTAGGCAGTGTTCTGGTCCTCGTAGTCACTaGACGTCTTCTCCAGGTCGATGGAGGCTCCCACAG | + |
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Preference number: 6 (lower is better) Translates to: SRSRQCSGPRSH*TSSPGRWRLPQ Trigger: CTGTGGGAGCCTCCATCGACCTGGAGAAGACGTCCAGTGACTACGAGGACCAGAACACTGCCTACTTCTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS CAA 72 bp | CTCTCACTGTGGGCTGCACGAACGCTGGACACCTCCTaGTGGAGTTTATTCAGTTCTGCCTGGAGCTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LSLWAARTLDTS*WSLFSSAWSCC Trigger: GCAGCAGCTCCAGGCAGAACTGAATAAACTCCACAAGGAGGTGTCCAGCGTTCGTGCAGCCCACAGTGAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS CAA 90 bp | GGTAGGCATCTCCTGCCTCAGATCCAGGATCGGGAGAAGGTTGAGTaGTTCCTCCAAAACTACAGAAGATCCAGACGGTTCCGAGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: GRHLLPQIQDREKVE*FLQNYRRSRRFRGP Trigger: GGGGCCTCGGAACCGTCTGGATCTTCTGTAGTTTTGGAGGAACAACTCAACCTTCTCCCGATCCTGGATCTGAGGCAGGAGATGCCTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CAA 90 bp | GGTAGGCATCTCCTGCCTCAGATCCAGGATCGGGAGAAGGTTGAGTaGTTCCTCCAAAACTACAGAAGATCCAGACGGTTGCCGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: GRHLLPQIQDREKVE*FLQNYRRSRRLPAL Trigger: CAGGGCCGGCAACCGTCTGGATCTTCTGTAGTTTTGGAGGAACAACTCAACCTTCTCCCGATCCTGGATCTGAGGCAGGAGATGCCTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137966.2 |
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| CDS TCA 72 bp | TCCGCACACCATGAGCACGGACGCGATATAAGCACGTaGAGCGGGGATGGCCCCAGTTGCTTAGAATCTGAA | + |
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Preference number: 6 (lower is better) Translates to: SAHHEHGRDIST*SGDGPSCLESE Trigger: TTCAGATTCTAAGCAACTGGGGCCATCCCCGCTTCACGTGCTTATATCGCGTCCGTGCTCATGGTGTGCGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CCA 72 bp | TCACTGTGGGCTGCACGAACGCTGGACACCTCCTTGTaGAGTTTATTCAGTTCTGCCTGGAGCTGCTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: SLWAARTLDTSL*SLFSSAWSCCS Trigger: ACTGCAGCAGCTCCAGGCAGAACTGAATAAACTCCACAAGGAGGTGTCCAGCGTTCGTGCAGCCCACAGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS CAA 90 bp | ATCAAAGATGAATTTCCCCAAGAACACTTCAGTCTCGTCATCAGCTaGGAGCCCATAGACTGCAAAGTCCCGAGGCGCGCTGCTGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: IKDEFPQEHFSLVIS*EPIDCKVPRRAAGP Trigger: GGGGCCAGCAGCGCGCCTCGGGACTTTGCAGTCTATGGGCTCCAAGCTGATGACGAGACTGAAGTGTTCTTGGGGAAATTCATCTTTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS TCA 72 bp | CCCAGCAATTTCCAGGGAACACATCTGGCTCCAATATaGCAGAAGGCGGGCGGGCATAGTTCCAGAAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: PSNFQGTHLAPI*QKAGGHSSRSS Trigger: TGAGCTTCTGGAACTATGCCCGCCCGCCTTCTGTCATATTGGAGCCAGATGTGTTCCCTGGAAATTGCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS GCA 72 bp | CTTCTCCAGGTCGATGGAGGCTCCCACAGAGCTCAGTaGATAGTCAGGTTTGCGCACGAAGTCTTCATTCAG | + |
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Preference number: 6 (lower is better) Translates to: LLQVDGGSHRAQ*IVRFAHEVFIQ Trigger: CTGAATGAAGACTTCGTGCGCAAACCTGACTATGCACTGAGCTCTGTGGGAGCCTCCATCGACCTGGAGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS CCA 72 bp | CGCTGTGGGAACTATTGCTGTTCTCGCTGTAGAAGTTaGGTGTGTGATTATGAGAGGATGCGGCCGAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: RCGNYCCSRCRS*VCDYERMRPSL Trigger: CAGGCTCGGCCGCATCCTCTCATAATCACACACCCAACTTCTACAGCGAGAACAGCAATAGTTCCCACAGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CAA 72 bp | GAATTTCCCCAAGAACACTTCAGTCTCGTCATCAGCTaGGAGCCCATAGACTGCAAAGTCCCGAGGCGCGCT | + |
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Preference number: 6 (lower is better) Translates to: EFPQEHFSLVIS*EPIDCKVPRRA Trigger: AGCGCGCCTCGGGACTTTGCAGTCTATGGGCTCCAAGCTGATGACGAGACTGAAGTGTTCTTGGGGAAATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS TCA 72 bp | GCATCTCCTGCCTCAGATCCAGGATCGGGAGAAGGTTaGGTTGTTCCTCCAAAACTACAGAAGATCCAGACG | + |
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Preference number: 6 (lower is better) Translates to: ASPASDPGSGEG*VVPPKLQKIQT Trigger: CGTCTGGATCTTCTGTAGTTTTGGAGGAACAACTCAACCTTCTCCCGATCCTGGATCTGAGGCAGGAGATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038860.12 ENSMUST00000137966.2 |
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| CDS GCA 72 bp | CATTGCTGTCCCCCGAAGTCGCGCTGTGGGAACTATTaGTGTTCTCGCTGTAGAAGTTGGGTGTGTGATTAT | + |
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Preference number: 6 (lower is better) Translates to: HCCPPKSRCGNY*CSRCRSWVCDY Trigger: ATAATCACACACCCAACTTCTACAGCGAGAACAGCAATAGTTCCCACAGCGCGACTTCGGGGGACAGCAATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CAA 72 bp | CTCCTGCCTCAGATCCAGGATCGGGAGAAGGTTGAGTaGTTCCTCCAAAACTACAGAAGATCCAGACGGTTC | + |
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Preference number: 6 (lower is better) Translates to: LLPQIQDREKVE*FLQNYRRSRRF Trigger: GAACCGTCTGGATCTTCTGTAGTTTTGGAGGAACAACTCAACCTTCTCCCGATCCTGGATCTGAGGCAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038860.12 |
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| CDS CAA 72 bp | CTCCTGCCTCAGATCCAGGATCGGGAGAAGGTTGAGTaGTTCCTCCAAAACTACAGAAGATCCAGACGGTTG | + |
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Preference number: 6 (lower is better) Translates to: LLPQIQDREKVE*FLQNYRRSRRL Trigger: CAACCGTCTGGATCTTCTGTAGTTTTGGAGGAACAACTCAACCTTCTCCCGATCCTGGATCTGAGGCAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137966.2 |
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