Pregenerated sensors for SPAG11B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059463Ensembl transcript IDs: ENSMUST00000039075.8, ENSMUST00000110767.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | GGATCTCCTGACTTTCCTGACATCTCGGGAAGACTGAACCACCCATaGCATGTCTCCACAAACAGTGATGCTCACCTCATCCCATCCACA | + |
Preference number: 1 (lower is better) Translates to: GSPDFPDISGRLNHP*HVSTNSDAHLIPST Trigger: TGTGGATGGGATGAGGTGAGCATCACTGTTTGTGGAGACATGGCATGGGTGGTTCAGTCTTCCCGAGATGTCAGGAAAGTCAGGAGATCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR GCA 90 bp | GAGGATAGAGAAGAAGCCTGGTTATGCCAGAAGAGTTCAGAAGAATaGTTGAGCTTCTGGCAGTTTACCACTTCTTTGTATCTGTCCCCA | + |
Preference number: 1 (lower is better) Translates to: EDREEAWLCQKSSEE*LSFWQFTTSLYLSP Trigger: TGGGGACAGATACAAAGAAGTGGTAAACTGCCAGAAGCTCAAGCATTCTTCTGAACTCTTCTGGCATAACCAGGCTTCTTCTCTATCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR GCA 90 bp | ACATATGACCACCATTGTGCCTGCCTATGTTTGTGGTGTGACAACTaGATTTCCTTTTTCTGTTCCCTCAGTGAACTAAGTCCTTTGAAA | + |
Preference number: 1 (lower is better) Translates to: TYDHHCACLCLWCDN*ISFFCSLSELSPLK Trigger: TTTCAAAGGACTTAGTTCACTGAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACAATGGTGGTCATATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR TCA 90 bp | GATTATGCCAAGAATGAGTCAGGAGTCATTTCTAAAATAAGGCTATaGTGTGGGGGATGGCATACATATGAAATAGGTTGTCATGTTCAT | + |
Preference number: 1 (lower is better) Translates to: DYAKNESGVISKIRL*CGGWHTYEIGCHVH Trigger: ATGAACATGACAACCTATTTCATATGTATGCCATCCCCCACATCATAGCCTTATTTTAGAAATGACTCCTGACTCATTCTTGGCATAATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR TCA 90 bp | GCCAACTCCTTCAGTCTTTGTGGATTTGGAGCTGCCTCTGCAGTAGGACATGAGCCTCTGGTTACTGCTTaGATCCAGCAGGATGTTACC | + |
Preference number: 2 (lower is better) Translates to: ANSFSLCGFGAASAVGHEPLVTA*IQQDVT Trigger: GGTAACATCCTGCTGGATTCAAGCAGTAACCAGAGG...CTCATGTCCTACTGCAGAGGCAGCTCCAAATCCACAAAGACTGAAGGAGTTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR TCA 90 bp | TGTGCCTGCCTATGTTTGTGGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTCGTTGTCCGTGTCCACTaGCCCTTGTCTCTGAGTGAG | + |
Preference number: 2 (lower is better) Translates to: CACLCLWCDNCISFFCSLVVRVH*PLSLSE Trigger: CTCACTCAGAGACAAGGGTCAGTGGACACGGACAAC...GAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR TCA 90 bp | TGTGCCTGCCTATGTTTGTGGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTCTGTCTCCACAAACAGTaGTGCTCACCTCATCCCATC | + |
Preference number: 2 (lower is better) Translates to: CACLCLWCDNCISFFCSLCLHKQ*CSPHPI Trigger: GATGGGATGAGGTGAGCATCACTGTTTGTGGAGACA...GAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR TCA 90 bp | TTGAGATTAAGGGCATTCCAGGAGCTGCCAACTCCTTCAGTCTTTGTGGATTTGTTCCAACTGAGAAAATaGCCTCCAAGGCTGGGGGAA | + |
Preference number: 2 (lower is better) Translates to: LRLRAFQELPTPSVFVDLFQLRK*PPRLGE Trigger: TTCCCCCAGCCTTGGAGGTCATTTTCTCAGTTGGAA...CAAATCCACAAAGACTGAAGGAGTTGGCAGCTCCTGGAATGCCCTTAATCTCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR TCA 90 bp | GAAGGACATGATAGTTCAGGAGAGCTGACAGGTTTGCAGGTCACTTCAGCTTTATCTAAAATAAGGCTATaGTGTGGGGGATGGCATACA | + |
Preference number: 2 (lower is better) Translates to: EGHDSSGELTGLQVTSALSKIRL*CGGWHT Trigger: TGTATGCCATCCCCCACATCATAGCCTTATTTTAGA...TAAAGCTGAAGTGACCTGCAAACCTGTCAGCTCTCCTGAACTATCATGTCCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR GCA 90 bp | TATTGCCACACAGCATACTATCAGAAAGAACATATGACCACCATTGTGCCTGCCAAGAGTTCAGAAGAATaGTTGAGCTTCTGGCAGTTT | + |
Preference number: 2 (lower is better) Translates to: YCHTAYYQKEHMTTIVPAKSSEE*LSFWQF Trigger: AAACTGCCAGAAGCTCAAGCATTCTTCTGAACTCTT...GGCAGGCACAATGGTGGTCATATGTTCTTTCTGATAGTATGCTGTGTGGCAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR CCA 90 bp | CCTATGAAGGTTTATTCCAGCATAAATGGTATGACTTTGGAGATGTGTCTGAATAGAGGCTTAGGTGGCTaGACATGGATAGAGATGCCT | + |
Preference number: 2 (lower is better) Translates to: PMKVYSSINGMTLEMCLNRGLGG*TWIEMP Trigger: AGGCATCTCTATCCATGTCCAGCCACCTAAGCCTCT...ATTCAGACACATCTCCAAAGTCATACCATTTATGCTGGAATAAACCTTCATAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 90 bp | GACAACTGCATTTCCTTTTTCTGTTCCCTCAGTGAACTAAGTCCTTaGAAACAGGAGGTGAATTCCAAGAAAGCAGAGATTATGATAGGG | + |
Preference number: 2 (lower is better) Translates to: DNCISFFCSLSELSP*KQEVNSKKAEIMIG Trigger: CCCTATCATAATCTCTGCTTTCTTGGAATTCACCTCCTGTTTCAAAGGACTTAGTTCACTGAGGGAACAGAAAAAGGAAATGCAGTTGTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 90 bp | ATACTATCAGAAAGAACATATGACCACCATTGTGCCTGCCTATGTTaGTGGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTCAGTGAA | + |
Preference number: 2 (lower is better) Translates to: ILSERTYDHHCACLC*WCDNCISFFCSLSE Trigger: TTCACTGAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACAATGGTGGTCATATGTTCTTTCTGATAGTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR TCA 90 bp | TTGTTTAGTTTTGTCATAATAAGAGGCTTAGGTGGCTGGACATGGATAGAGATGACTGACCCTTGTCTCTaGGTGAGAAATGACTTTGAG | + |
Preference number: 2 (lower is better) Translates to: LFSFVIIRGLGGWTWIEMTDPCL*VRNDFE Trigger: CTCAAAGTCATTTCTCACTCAGAGACAAGGGTCAGT...CATCTCTATCCATGTCCAGCCACCTAAGCCTCTTATTATGACAAAACTAAACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 90 bp | TACTTAGAGTTGATGGGACTGTATCTACTGAATATCATCAGATATTaGCCAGCATTTAATTGTTGTCCGTGTCCACTGACCCTTGTCTCT | + |
Preference number: 2 (lower is better) Translates to: YLELMGLYLLNIIRY*PAFNCCPCPLTLVS Trigger: AGAGACAAGGGTCAGTGGACACGGACAACAATTAAATGCTGGCAAATATCTGATGATATTCAGTAGATACAGTCCCATCAACTCTAAGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR TCA 90 bp | CCTATGAAGGTTTATTCCAGCATAAATGGTATGACTTTGGAGATGTGTCTGAATATCAGAAAGAACATATaGCCACCATTGTGCCTGCCT | + |
Preference number: 2 (lower is better) Translates to: PMKVYSSINGMTLEMCLNIRKNI*PPLCLP Trigger: AGGCAGGCACAATGGTGGTCATATGTTCTTTCTGAT...ATTCAGACACATCTCCAAAGTCATACCATTTATGCTGGAATAAACCTTCATAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR GCA 90 bp | AATAGCATTGTAATATTGCCACACAGCATACTATCAGAAAGAACATATGACCACAGACTGAACCACCCATaGCATGTCTCCACAAACAGT | + |
Preference number: 2 (lower is better) Translates to: NSIVILPHSILSERTYDHRLNHP*HVSTNS Trigger: ACTGTTTGTGGAGACATGGCATGGGTGGTTCAGTCT...GTGGTCATATGTTCTTTCTGATAGTATGCTGTGTGGCAATATTACAATGCTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR CCA 90 bp | TTGTTTAGTTTTGTCATAATAAGAGGCTTAGGTGGCTGGACATGGATAGAGATGTATTGTAGCCACACCTaGAAGGACATGATAGTTCAG | + |
Preference number: 2 (lower is better) Translates to: LFSFVIIRGLGGWTWIEMYCSHT*KDMIVQ Trigger: CTGAACTATCATGTCCTTCCAGGTGTGGCTACAATA...CATCTCTATCCATGTCCAGCCACCTAAGCCTCTTATTATGACAAAACTAAACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR GCA 90 bp | CCTATGAAGGTTTATTCCAGCATAAATGGTATGACTTTGGAGATGTGTCTGAATGAAGAAGCCTGGTTATaGCAGAAGAGTTCAGAAGAA | + |
Preference number: 2 (lower is better) Translates to: PMKVYSSINGMTLEMCLNEEAWL*QKSSEE Trigger: TTCTTCTGAACTCTTCTGGCATAACCAGGCTTCTTC...ATTCAGACACATCTCCAAAGTCATACCATTTATGCTGGAATAAACCTTCATAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 90 bp | TTCCAAGAAAGCAGAGATTATGATAGGGTAAGGAAGTACTTAGAGTaGATGGGACTGTATCTACTGAATATCATCAGATATTTGCCAGCA | + |
Preference number: 2 (lower is better) Translates to: FQESRDYDRVRKYLE*MGLYLLNIIRYLPA Trigger: TGCTGGCAAATATCTGATGATATTCAGTAGATACAGTCCCATCAACTCTAAGTACTTCCTTACCCTATCATAATCTCTGCTTTCTTGGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR GCA 72 bp | GACTTTCCTGACATCTCGGGAAGACTGAACCACCCATaGCATGTCTCCACAAACAGTGATGCTCACCTCATC | + |
Preference number: 3 (lower is better) Translates to: DFPDISGRLNHP*HVSTNSDAHLI Trigger: GATGAGGTGAGCATCACTGTTTGTGGAGACATGGCATGGGTGGTTCAGTCTTCCCGAGATGTCAGGAAAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR CAA 90 bp | GCCAACTCCTTCAGTCTTTGTGGATTTGGAGCTGCCTCTGCAGTAGGACATGAGCAGTTTACCACTTCTTaGTATCTGTCCCCACAGGAG | + |
Preference number: 3 (lower is better) Translates to: ANSFSLCGFGAASAVGHEQFTTS*YLSPQE Trigger: CTCCTGTGGGGACAGATACAAAGAAGTGGTAAACTG...CTCATGTCCTACTGCAGAGGCAGCTCCAAATCCACAAAGACTGAAGGAGTTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CCA 72 bp | GCCTCTGCAGTAGGACATGAGGATAGAGAAGAAGCCTaGTTATGCCAGAAGAGTTCAGAAGAATGCTTGAGC | + |
Preference number: 3 (lower is better) Translates to: ASAVGHEDREEA*LCQKSSEECLS Trigger: GCTCAAGCATTCTTCTGAACTCTTCTGGCATAACCAGGCTTCTTCTCTATCCTCATGTCCTACTGCAGAGGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR GCA 72 bp | GCAGTAGGACATGAGGATAGAGAAGAAGCCTGGTTATaGCAGAAGAGTTCAGAAGAATGCTTGAGCTTCTGG | + |
Preference number: 3 (lower is better) Translates to: AVGHEDREEAWL*QKSSEECLSFW Trigger: CCAGAAGCTCAAGCATTCTTCTGAACTCTTCTGGCATAACCAGGCTTCTTCTCTATCCTCATGTCCTACTGC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR TCA 72 bp | CTAGGTAGGAGAAGACTCTCTCCTCTGGTTACTGCTTaGATCCAGCAGGATGTTACCATAGTGAACTTAGAC | + |
Preference number: 3 (lower is better) Translates to: LGRRRLSPLVTA*IQQDVTIVNLD Trigger: GTCTAAGTTCACTATGGTAACATCCTGCTGGATTCAAGCAGTAACCAGAGGAGAGAGTCTTCTCCTACCTAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR CAA 90 bp | TGTGCCTGCCTATGTTTGTGGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTCAGTGAACTAAGTCCTTaGAAACAGGAGGTGAATTCC | + |
Preference number: 3 (lower is better) Translates to: CACLCLWCDNCISFFCSLSELSP*KQEVNS Trigger: GGAATTCACCTCCTGTTTCAAAGGACTTAGTTCACT...GAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CCA 72 bp | TTATGCCAGAAGAGTTCAGAAGAATGCTTGAGCTTCTaGCAGTTTACCACTTCTTTGTATCTGTCCCCACAG | + |
Preference number: 3 (lower is better) Translates to: LCQKSSEECLSF*QFTTSLYLSPQ Trigger: CTGTGGGGACAGATACAAAGAAGTGGTAAACTGCCAGAAGCTCAAGCATTCTTCTGAACTCTTCTGGCATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CCA 72 bp | AGAACATATGACCACCATTGTGCCTGCCTATGTTTGTaGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTC | + |
Preference number: 3 (lower is better) Translates to: RTYDHHCACLCL*CDNCISFFCSL Trigger: GAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACAATGGTGGTCATATGTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR-3UTR CAA 90 bp | ATCATCAGATATTTGCCAGCATTTAATTGTTGTCCGTGTCCACTGACCCTTGTCAGTTCAGAAGAATGCTaGAGCTTCTGGCAGTTTACC | + |
Preference number: 3 (lower is better) Translates to: IIRYLPAFNCCPCPLTLVSSEEC*SFWQFT Trigger: GGTAAACTGCCAGAAGCTCAAGCATTCTTCTGAACT...GACAAGGGTCAGTGGACACGGACAACAATTAAATGCTGGCAAATATCTGATGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR GCA 72 bp | GAAGAAGCCTGGTTATGCCAGAAGAGTTCAGAAGAATaGTTGAGCTTCTGGCAGTTTACCACTTCTTTGTAT | + |
Preference number: 3 (lower is better) Translates to: EEAWLCQKSSEE*LSFWQFTTSLY Trigger: ATACAAAGAAGTGGTAAACTGCCAGAAGCTCAAGCATTCTTCTGAACTCTTCTGGCATAACCAGGCTTCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR GCA 72 bp | ATACTATCAGAAAGAACATATGACCACCATTGTGCCTaGCTATGTTTGTGGTGTGACAACTGCATTTCCTTT | + |
Preference number: 3 (lower is better) Translates to: ILSERTYDHHCA*LCLWCDNCISF Trigger: AAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACAATGGTGGTCATATGTTCTTTCTGATAGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR GCA 72 bp | TTTCAAATTCTAACCCATGAACACAAGTCCAGACAGTaGTCTGTTCCTTCAAAGCCTCCTAATTTCCTATAT | + |
Preference number: 3 (lower is better) Translates to: FQILTHEHKSRQ*SVPSKPPNFLY Trigger: ATATAGGAAATTAGGAGGCTTTGAAGGAACAGAGCACTGTCTGGACTTGTGTTCATGGGTTAGAATTTGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR TCA 72 bp | AAGAATGAGTCAGGAGTCATTTCTAAAATAAGGCTATaGTGTGGGGGATGGCATACATATGAAATAGGTTGT | + |
Preference number: 3 (lower is better) Translates to: KNESGVISKIRL*CGGWHTYEIGC Trigger: ACAACCTATTTCATATGTATGCCATCCCCCACATCATAGCCTTATTTTAGAAATGACTCCTGACTCATTCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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CDS-3UTR TCA 90 bp | TGTGCCTGCCTATGTTTGTGGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTCTGGATGAACTTGCCTTaGTCTTGGGTGCTTGACTTA | + |
Preference number: 4 (lower is better) Translates to: CACLCLWCDNCISFFCSLWMNLP*SWVLDL Trigger: TAAGTCAAGCACCCAAGATCAAGGCAAGTTCATCCA...GAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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CDS-3UTR GCA 90 bp | AAGTACTTAGAGTTGATGGGACTGTATCTACTGAATATCATCAGATATTTGCCAGGCATTGGACAGGCCTaGTGGAAACAGCAGGGCTGC | + |
Preference number: 4 (lower is better) Translates to: KYLELMGLYLLNIIRYLPGIGQA*WKQQGC Trigger: GCAGCCCTGCTGTTTCCAGCAGGCCTGTCCAATGCC...TGGCAAATATCTGATGATATTCAGTAGATACAGTCCCATCAACTCTAAGTACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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CDS-3UTR CCA 90 bp | ATCATCAGATATTTGCCAGCATTTAATTGTTGTCCGTGTCCACTGACCCTTGTCCAGGAAATTCGTCCTTaGGGAAACTGGGAGGTTCAG | + |
Preference number: 4 (lower is better) Translates to: IIRYLPAFNCCPCPLTLVQEIRP*GNWEVQ Trigger: CTGAACCTCCCAGTTTCCCCAAGGACGAATTTCCTG...GACAAGGGTCAGTGGACACGGACAACAATTAAATGCTGGCAAATATCTGATGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 72 bp | CTGGAAGGACATGATAGTTCAGGAGAGCTGACAGGTTaGCAGGTCACTTCAGCTTTAGTGATTAGCAACATC | + |
Preference number: 4 (lower is better) Translates to: LEGHDSSGELTG*QVTSALVISNI Trigger: GATGTTGCTAATCACTAAAGCTGAAGTGACCTGCAAACCTGTCAGCTCTCCTGAACTATCATGTCCTTCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 72 bp | GAAGAATGCTTGAGCTTCTGGCAGTTTACCACTTCTTaGTATCTGTCCCCACAGGAGGTAGTAAATAGCTCA | + |
Preference number: 4 (lower is better) Translates to: EECLSFWQFTTS*YLSPQEVVNSS Trigger: TGAGCTATTTACTACCTCCTGTGGGGACAGATACAAAGAAGTGGTAAACTGCCAGAAGCTCAAGCATTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 72 bp | TTGATGGGACTGTATCTACTGAATATCATCAGATATTaGCCAGCATTTAATTGTTGTCCGTGTCCACTGACC | + |
Preference number: 4 (lower is better) Translates to: LMGLYLLNIIRY*PAFNCCPCPLT Trigger: GGTCAGTGGACACGGACAACAATTAAATGCTGGCAAATATCTGATGATATTCAGTAGATACAGTCCCATCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 72 bp | ATTTCCTTTTTCTGTTCCCTCAGTGAACTAAGTCCTTaGAAACAGGAGGTGAATTCCAAGAAAGCAGAGATT | + |
Preference number: 4 (lower is better) Translates to: ISFFCSLSELSP*KQEVNSKKAEI Trigger: AATCTCTGCTTTCTTGGAATTCACCTCCTGTTTCAAAGGACTTAGTTCACTGAGGGAACAGAAAAAGGAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 72 bp | CAAGCCTTTGGTAAGATAGTGTGTACAAAGCCTTTGTaGTTTAGTTTTGTCATAATAAGAGGCTTAGGTGGC | + |
Preference number: 4 (lower is better) Translates to: QAFGKIVCTKPL*FSFVIIRGLGG Trigger: GCCACCTAAGCCTCTTATTATGACAAAACTAAACAACAAAGGCTTTGTACACACTATCTTACCAAAGGCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 72 bp | AGCAGAGATTATGATAGGGTAAGGAAGTACTTAGAGTaGATGGGACTGTATCTACTGAATATCATCAGATAT | + |
Preference number: 4 (lower is better) Translates to: SRDYDRVRKYLE*MGLYLLNIIRY Trigger: ATATCTGATGATATTCAGTAGATACAGTCCCATCAACTCTAAGTACTTCCTTACCCTATCATAATCTCTGCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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3UTR CAA 72 bp | AAGCAAGCCTTTGGTAAGATAGTGTGTACAAAGCCTTaGTTGTTTAGTTTTGTCATAATAAGAGGCTTAGGT | + |
Preference number: 4 (lower is better) Translates to: KQAFGKIVCTKP*LFSFVIIRGLG Trigger: ACCTAAGCCTCTTATTATGACAAAACTAAACAACAAAGGCTTTGTACACACTATCTTACCAAAGGCTTGCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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CDS CCA 90 bp | GCAGGAAATTCGTCCTTGGGGAAACTGGGAGGTTCAGTGACTAAGTaGTTAATGGACGAGGCATTGGACAGGCCTGGAAACAGCAGGGCT | + |
Preference number: 5 (lower is better) Translates to: AGNSSLGKLGGSVTK*LMDEALDRPGNSRA Trigger: AGCCCTGCTGTTTCCAGGCCTGTCCAATGCCTCGTCCATTAACCACTTAGTCACTGAACCTCCCAGTTTCCCCAAGGACGAATTTCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039075.8 |
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CDS CCA 90 bp | GCAGGAAATTCGTCCTTGGGGAAACTGGGAGGTTCAGTGACTAAGTaGTTAATGGACGAGGCATTGGACAGGCCTGCTGGAAACAGCAGG | + |
Preference number: 5 (lower is better) Translates to: AGNSSLGKLGGSVTK*LMDEALDRPAGNSR Trigger: CCTGCTGTTTCCAGCAGGCCTGTCCAATGCCTCGTCCATTAACCACTTAGTCACTGAACCTCCCAGTTTCCCCAAGGACGAATTTCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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CDS CCA 72 bp | TCGTCCTTGGGGAAACTGGGAGGTTCAGTGACTAAGTaGTTAATGGACGAGGCATTGGACAGGCCTGCTGGA | + |
Preference number: 6 (lower is better) Translates to: SSLGKLGGSVTK*LMDEALDRPAG Trigger: TCCAGCAGGCCTGTCCAATGCCTCGTCCATTAACCACTTAGTCACTGAACCTCCCAGTTTCCCCAAGGACGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110767.2 |
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CDS CCA 72 bp | TCGTCCTTGGGGAAACTGGGAGGTTCAGTGACTAAGTaGTTAATGGACGAGGCATTGGACAGGCCTGGAAAC | + |
Preference number: 6 (lower is better) Translates to: SSLGKLGGSVTK*LMDEALDRPGN Trigger: GTTTCCAGGCCTGTCCAATGCCTCGTCCATTAACCACTTAGTCACTGAACCTCCCAGTTTCCCCAAGGACGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039075.8 |
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CDS CAA 72 bp | GGAGGTTCAGTGACTAAGTGGTTAATGGACGAGGCATaGGACAGGCCTGGAAACAGCAGGGCTGCAAAAAGT | + |
Preference number: 6 (lower is better) Translates to: GGSVTKWLMDEA*DRPGNSRAAKS Trigger: ACTTTTTGCAGCCCTGCTGTTTCCAGGCCTGTCCAATGCCTCGTCCATTAACCACTTAGTCACTGAACCTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039075.8 |
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CDS TCA 72 bp | AGTATTCTTGACATTGTCCTTCACTTTTCTTGCAGTTaGCAATTTGGTAATTTGGTTCAGGCTCGTGGTAAG | + |
Preference number: 6 (lower is better) Translates to: SILDIVLHFSCS*QFGNLVQARGK Trigger: CTTACCACGAGCCTGAACCAAATTACCAAATTGTCAACTGCAAGAAAAGTGAAGGACAATGTCAAGAATACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039075.8 |