RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPAG11B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059463

Ensembl transcript IDs: ENSMUST00000039075.8, ENSMUST00000110767.2

Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGATCTCCTGACTTTCCTGACATCTCGGGAAGACTGAACCACCCATaGCATGTCTCCACAAACAGTGATGCTCACCTCATCCCATCCACA +
Preference number: 1 (lower is better)
Translates to: GSPDFPDISGRLNHP*HVSTNSDAHLIPST
Trigger: TGTGGATGGGATGAGGTGAGCATCACTGTTTGTGGAGACATGGCATGGGTGGTTCAGTCTTCCCGAGATGTCAGGAAAGTCAGGAGATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR GCA 90 bp GAGGATAGAGAAGAAGCCTGGTTATGCCAGAAGAGTTCAGAAGAATaGTTGAGCTTCTGGCAGTTTACCACTTCTTTGTATCTGTCCCCA +
Preference number: 1 (lower is better)
Translates to: EDREEAWLCQKSSEE*LSFWQFTTSLYLSP
Trigger: TGGGGACAGATACAAAGAAGTGGTAAACTGCCAGAAGCTCAAGCATTCTTCTGAACTCTTCTGGCATAACCAGGCTTCTTCTCTATCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR GCA 90 bp ACATATGACCACCATTGTGCCTGCCTATGTTTGTGGTGTGACAACTaGATTTCCTTTTTCTGTTCCCTCAGTGAACTAAGTCCTTTGAAA +
Preference number: 1 (lower is better)
Translates to: TYDHHCACLCLWCDN*ISFFCSLSELSPLK
Trigger: TTTCAAAGGACTTAGTTCACTGAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACAATGGTGGTCATATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR TCA 90 bp GATTATGCCAAGAATGAGTCAGGAGTCATTTCTAAAATAAGGCTATaGTGTGGGGGATGGCATACATATGAAATAGGTTGTCATGTTCAT +
Preference number: 1 (lower is better)
Translates to: DYAKNESGVISKIRL*CGGWHTYEIGCHVH
Trigger: ATGAACATGACAACCTATTTCATATGTATGCCATCCCCCACATCATAGCCTTATTTTAGAAATGACTCCTGACTCATTCTTGGCATAATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR TCA 90 bp GCCAACTCCTTCAGTCTTTGTGGATTTGGAGCTGCCTCTGCAGTAGGACATGAGCCTCTGGTTACTGCTTaGATCCAGCAGGATGTTACC +
Preference number: 2 (lower is better)
Translates to: ANSFSLCGFGAASAVGHEPLVTA*IQQDVT
Trigger: GGTAACATCCTGCTGGATTCAAGCAGTAACCAGAGG...CTCATGTCCTACTGCAGAGGCAGCTCCAAATCCACAAAGACTGAAGGAGTTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR TCA 90 bp TGTGCCTGCCTATGTTTGTGGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTCGTTGTCCGTGTCCACTaGCCCTTGTCTCTGAGTGAG +
Preference number: 2 (lower is better)
Translates to: CACLCLWCDNCISFFCSLVVRVH*PLSLSE
Trigger: CTCACTCAGAGACAAGGGTCAGTGGACACGGACAAC...GAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR TCA 90 bp TGTGCCTGCCTATGTTTGTGGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTCTGTCTCCACAAACAGTaGTGCTCACCTCATCCCATC +
Preference number: 2 (lower is better)
Translates to: CACLCLWCDNCISFFCSLCLHKQ*CSPHPI
Trigger: GATGGGATGAGGTGAGCATCACTGTTTGTGGAGACA...GAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR TCA 90 bp TTGAGATTAAGGGCATTCCAGGAGCTGCCAACTCCTTCAGTCTTTGTGGATTTGTTCCAACTGAGAAAATaGCCTCCAAGGCTGGGGGAA +
Preference number: 2 (lower is better)
Translates to: LRLRAFQELPTPSVFVDLFQLRK*PPRLGE
Trigger: TTCCCCCAGCCTTGGAGGTCATTTTCTCAGTTGGAA...CAAATCCACAAAGACTGAAGGAGTTGGCAGCTCCTGGAATGCCCTTAATCTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR TCA 90 bp GAAGGACATGATAGTTCAGGAGAGCTGACAGGTTTGCAGGTCACTTCAGCTTTATCTAAAATAAGGCTATaGTGTGGGGGATGGCATACA +
Preference number: 2 (lower is better)
Translates to: EGHDSSGELTGLQVTSALSKIRL*CGGWHT
Trigger: TGTATGCCATCCCCCACATCATAGCCTTATTTTAGA...TAAAGCTGAAGTGACCTGCAAACCTGTCAGCTCTCCTGAACTATCATGTCCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR GCA 90 bp TATTGCCACACAGCATACTATCAGAAAGAACATATGACCACCATTGTGCCTGCCAAGAGTTCAGAAGAATaGTTGAGCTTCTGGCAGTTT +
Preference number: 2 (lower is better)
Translates to: YCHTAYYQKEHMTTIVPAKSSEE*LSFWQF
Trigger: AAACTGCCAGAAGCTCAAGCATTCTTCTGAACTCTT...GGCAGGCACAATGGTGGTCATATGTTCTTTCTGATAGTATGCTGTGTGGCAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR CCA 90 bp CCTATGAAGGTTTATTCCAGCATAAATGGTATGACTTTGGAGATGTGTCTGAATAGAGGCTTAGGTGGCTaGACATGGATAGAGATGCCT +
Preference number: 2 (lower is better)
Translates to: PMKVYSSINGMTLEMCLNRGLGG*TWIEMP
Trigger: AGGCATCTCTATCCATGTCCAGCCACCTAAGCCTCT...ATTCAGACACATCTCCAAAGTCATACCATTTATGCTGGAATAAACCTTCATAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 90 bp GACAACTGCATTTCCTTTTTCTGTTCCCTCAGTGAACTAAGTCCTTaGAAACAGGAGGTGAATTCCAAGAAAGCAGAGATTATGATAGGG +
Preference number: 2 (lower is better)
Translates to: DNCISFFCSLSELSP*KQEVNSKKAEIMIG
Trigger: CCCTATCATAATCTCTGCTTTCTTGGAATTCACCTCCTGTTTCAAAGGACTTAGTTCACTGAGGGAACAGAAAAAGGAAATGCAGTTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 90 bp ATACTATCAGAAAGAACATATGACCACCATTGTGCCTGCCTATGTTaGTGGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTCAGTGAA +
Preference number: 2 (lower is better)
Translates to: ILSERTYDHHCACLC*WCDNCISFFCSLSE
Trigger: TTCACTGAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACAATGGTGGTCATATGTTCTTTCTGATAGTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR TCA 90 bp TTGTTTAGTTTTGTCATAATAAGAGGCTTAGGTGGCTGGACATGGATAGAGATGACTGACCCTTGTCTCTaGGTGAGAAATGACTTTGAG +
Preference number: 2 (lower is better)
Translates to: LFSFVIIRGLGGWTWIEMTDPCL*VRNDFE
Trigger: CTCAAAGTCATTTCTCACTCAGAGACAAGGGTCAGT...CATCTCTATCCATGTCCAGCCACCTAAGCCTCTTATTATGACAAAACTAAACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 90 bp TACTTAGAGTTGATGGGACTGTATCTACTGAATATCATCAGATATTaGCCAGCATTTAATTGTTGTCCGTGTCCACTGACCCTTGTCTCT +
Preference number: 2 (lower is better)
Translates to: YLELMGLYLLNIIRY*PAFNCCPCPLTLVS
Trigger: AGAGACAAGGGTCAGTGGACACGGACAACAATTAAATGCTGGCAAATATCTGATGATATTCAGTAGATACAGTCCCATCAACTCTAAGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR TCA 90 bp CCTATGAAGGTTTATTCCAGCATAAATGGTATGACTTTGGAGATGTGTCTGAATATCAGAAAGAACATATaGCCACCATTGTGCCTGCCT +
Preference number: 2 (lower is better)
Translates to: PMKVYSSINGMTLEMCLNIRKNI*PPLCLP
Trigger: AGGCAGGCACAATGGTGGTCATATGTTCTTTCTGAT...ATTCAGACACATCTCCAAAGTCATACCATTTATGCTGGAATAAACCTTCATAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR GCA 90 bp AATAGCATTGTAATATTGCCACACAGCATACTATCAGAAAGAACATATGACCACAGACTGAACCACCCATaGCATGTCTCCACAAACAGT +
Preference number: 2 (lower is better)
Translates to: NSIVILPHSILSERTYDHRLNHP*HVSTNS
Trigger: ACTGTTTGTGGAGACATGGCATGGGTGGTTCAGTCT...GTGGTCATATGTTCTTTCTGATAGTATGCTGTGTGGCAATATTACAATGCTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR CCA 90 bp TTGTTTAGTTTTGTCATAATAAGAGGCTTAGGTGGCTGGACATGGATAGAGATGTATTGTAGCCACACCTaGAAGGACATGATAGTTCAG +
Preference number: 2 (lower is better)
Translates to: LFSFVIIRGLGGWTWIEMYCSHT*KDMIVQ
Trigger: CTGAACTATCATGTCCTTCCAGGTGTGGCTACAATA...CATCTCTATCCATGTCCAGCCACCTAAGCCTCTTATTATGACAAAACTAAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR GCA 90 bp CCTATGAAGGTTTATTCCAGCATAAATGGTATGACTTTGGAGATGTGTCTGAATGAAGAAGCCTGGTTATaGCAGAAGAGTTCAGAAGAA +
Preference number: 2 (lower is better)
Translates to: PMKVYSSINGMTLEMCLNEEAWL*QKSSEE
Trigger: TTCTTCTGAACTCTTCTGGCATAACCAGGCTTCTTC...ATTCAGACACATCTCCAAAGTCATACCATTTATGCTGGAATAAACCTTCATAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 90 bp TTCCAAGAAAGCAGAGATTATGATAGGGTAAGGAAGTACTTAGAGTaGATGGGACTGTATCTACTGAATATCATCAGATATTTGCCAGCA +
Preference number: 2 (lower is better)
Translates to: FQESRDYDRVRKYLE*MGLYLLNIIRYLPA
Trigger: TGCTGGCAAATATCTGATGATATTCAGTAGATACAGTCCCATCAACTCTAAGTACTTCCTTACCCTATCATAATCTCTGCTTTCTTGGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR GCA 72 bp GACTTTCCTGACATCTCGGGAAGACTGAACCACCCATaGCATGTCTCCACAAACAGTGATGCTCACCTCATC +
Preference number: 3 (lower is better)
Translates to: DFPDISGRLNHP*HVSTNSDAHLI
Trigger: GATGAGGTGAGCATCACTGTTTGTGGAGACATGGCATGGGTGGTTCAGTCTTCCCGAGATGTCAGGAAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR CAA 90 bp GCCAACTCCTTCAGTCTTTGTGGATTTGGAGCTGCCTCTGCAGTAGGACATGAGCAGTTTACCACTTCTTaGTATCTGTCCCCACAGGAG +
Preference number: 3 (lower is better)
Translates to: ANSFSLCGFGAASAVGHEQFTTS*YLSPQE
Trigger: CTCCTGTGGGGACAGATACAAAGAAGTGGTAAACTG...CTCATGTCCTACTGCAGAGGCAGCTCCAAATCCACAAAGACTGAAGGAGTTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CCA 72 bp GCCTCTGCAGTAGGACATGAGGATAGAGAAGAAGCCTaGTTATGCCAGAAGAGTTCAGAAGAATGCTTGAGC +
Preference number: 3 (lower is better)
Translates to: ASAVGHEDREEA*LCQKSSEECLS
Trigger: GCTCAAGCATTCTTCTGAACTCTTCTGGCATAACCAGGCTTCTTCTCTATCCTCATGTCCTACTGCAGAGGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR GCA 72 bp GCAGTAGGACATGAGGATAGAGAAGAAGCCTGGTTATaGCAGAAGAGTTCAGAAGAATGCTTGAGCTTCTGG +
Preference number: 3 (lower is better)
Translates to: AVGHEDREEAWL*QKSSEECLSFW
Trigger: CCAGAAGCTCAAGCATTCTTCTGAACTCTTCTGGCATAACCAGGCTTCTTCTCTATCCTCATGTCCTACTGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR TCA 72 bp CTAGGTAGGAGAAGACTCTCTCCTCTGGTTACTGCTTaGATCCAGCAGGATGTTACCATAGTGAACTTAGAC +
Preference number: 3 (lower is better)
Translates to: LGRRRLSPLVTA*IQQDVTIVNLD
Trigger: GTCTAAGTTCACTATGGTAACATCCTGCTGGATTCAAGCAGTAACCAGAGGAGAGAGTCTTCTCCTACCTAG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR CAA 90 bp TGTGCCTGCCTATGTTTGTGGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTCAGTGAACTAAGTCCTTaGAAACAGGAGGTGAATTCC +
Preference number: 3 (lower is better)
Translates to: CACLCLWCDNCISFFCSLSELSP*KQEVNS
Trigger: GGAATTCACCTCCTGTTTCAAAGGACTTAGTTCACT...GAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CCA 72 bp TTATGCCAGAAGAGTTCAGAAGAATGCTTGAGCTTCTaGCAGTTTACCACTTCTTTGTATCTGTCCCCACAG +
Preference number: 3 (lower is better)
Translates to: LCQKSSEECLSF*QFTTSLYLSPQ
Trigger: CTGTGGGGACAGATACAAAGAAGTGGTAAACTGCCAGAAGCTCAAGCATTCTTCTGAACTCTTCTGGCATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CCA 72 bp AGAACATATGACCACCATTGTGCCTGCCTATGTTTGTaGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTC +
Preference number: 3 (lower is better)
Translates to: RTYDHHCACLCL*CDNCISFFCSL
Trigger: GAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACAATGGTGGTCATATGTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR-3UTR CAA 90 bp ATCATCAGATATTTGCCAGCATTTAATTGTTGTCCGTGTCCACTGACCCTTGTCAGTTCAGAAGAATGCTaGAGCTTCTGGCAGTTTACC +
Preference number: 3 (lower is better)
Translates to: IIRYLPAFNCCPCPLTLVSSEEC*SFWQFT
Trigger: GGTAAACTGCCAGAAGCTCAAGCATTCTTCTGAACT...GACAAGGGTCAGTGGACACGGACAACAATTAAATGCTGGCAAATATCTGATGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR GCA 72 bp GAAGAAGCCTGGTTATGCCAGAAGAGTTCAGAAGAATaGTTGAGCTTCTGGCAGTTTACCACTTCTTTGTAT +
Preference number: 3 (lower is better)
Translates to: EEAWLCQKSSEE*LSFWQFTTSLY
Trigger: ATACAAAGAAGTGGTAAACTGCCAGAAGCTCAAGCATTCTTCTGAACTCTTCTGGCATAACCAGGCTTCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR GCA 72 bp ATACTATCAGAAAGAACATATGACCACCATTGTGCCTaGCTATGTTTGTGGTGTGACAACTGCATTTCCTTT +
Preference number: 3 (lower is better)
Translates to: ILSERTYDHHCA*LCLWCDNCISF
Trigger: AAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACAATGGTGGTCATATGTTCTTTCTGATAGTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR GCA 72 bp TTTCAAATTCTAACCCATGAACACAAGTCCAGACAGTaGTCTGTTCCTTCAAAGCCTCCTAATTTCCTATAT +
Preference number: 3 (lower is better)
Translates to: FQILTHEHKSRQ*SVPSKPPNFLY
Trigger: ATATAGGAAATTAGGAGGCTTTGAAGGAACAGAGCACTGTCTGGACTTGTGTTCATGGGTTAGAATTTGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR TCA 72 bp AAGAATGAGTCAGGAGTCATTTCTAAAATAAGGCTATaGTGTGGGGGATGGCATACATATGAAATAGGTTGT +
Preference number: 3 (lower is better)
Translates to: KNESGVISKIRL*CGGWHTYEIGC
Trigger: ACAACCTATTTCATATGTATGCCATCCCCCACATCATAGCCTTATTTTAGAAATGACTCCTGACTCATTCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
CDS-3UTR TCA 90 bp TGTGCCTGCCTATGTTTGTGGTGTGACAACTGCATTTCCTTTTTCTGTTCCCTCTGGATGAACTTGCCTTaGTCTTGGGTGCTTGACTTA +
Preference number: 4 (lower is better)
Translates to: CACLCLWCDNCISFFCSLWMNLP*SWVLDL
Trigger: TAAGTCAAGCACCCAAGATCAAGGCAAGTTCATCCA...GAGGGAACAGAAAAAGGAAATGCAGTTGTCACACCACAAACATAGGCAGGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
CDS-3UTR GCA 90 bp AAGTACTTAGAGTTGATGGGACTGTATCTACTGAATATCATCAGATATTTGCCAGGCATTGGACAGGCCTaGTGGAAACAGCAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: KYLELMGLYLLNIIRYLPGIGQA*WKQQGC
Trigger: GCAGCCCTGCTGTTTCCAGCAGGCCTGTCCAATGCC...TGGCAAATATCTGATGATATTCAGTAGATACAGTCCCATCAACTCTAAGTACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
CDS-3UTR CCA 90 bp ATCATCAGATATTTGCCAGCATTTAATTGTTGTCCGTGTCCACTGACCCTTGTCCAGGAAATTCGTCCTTaGGGAAACTGGGAGGTTCAG +
Preference number: 4 (lower is better)
Translates to: IIRYLPAFNCCPCPLTLVQEIRP*GNWEVQ
Trigger: CTGAACCTCCCAGTTTCCCCAAGGACGAATTTCCTG...GACAAGGGTCAGTGGACACGGACAACAATTAAATGCTGGCAAATATCTGATGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 72 bp CTGGAAGGACATGATAGTTCAGGAGAGCTGACAGGTTaGCAGGTCACTTCAGCTTTAGTGATTAGCAACATC +
Preference number: 4 (lower is better)
Translates to: LEGHDSSGELTG*QVTSALVISNI
Trigger: GATGTTGCTAATCACTAAAGCTGAAGTGACCTGCAAACCTGTCAGCTCTCCTGAACTATCATGTCCTTCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 72 bp GAAGAATGCTTGAGCTTCTGGCAGTTTACCACTTCTTaGTATCTGTCCCCACAGGAGGTAGTAAATAGCTCA +
Preference number: 4 (lower is better)
Translates to: EECLSFWQFTTS*YLSPQEVVNSS
Trigger: TGAGCTATTTACTACCTCCTGTGGGGACAGATACAAAGAAGTGGTAAACTGCCAGAAGCTCAAGCATTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 72 bp TTGATGGGACTGTATCTACTGAATATCATCAGATATTaGCCAGCATTTAATTGTTGTCCGTGTCCACTGACC +
Preference number: 4 (lower is better)
Translates to: LMGLYLLNIIRY*PAFNCCPCPLT
Trigger: GGTCAGTGGACACGGACAACAATTAAATGCTGGCAAATATCTGATGATATTCAGTAGATACAGTCCCATCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 72 bp ATTTCCTTTTTCTGTTCCCTCAGTGAACTAAGTCCTTaGAAACAGGAGGTGAATTCCAAGAAAGCAGAGATT +
Preference number: 4 (lower is better)
Translates to: ISFFCSLSELSP*KQEVNSKKAEI
Trigger: AATCTCTGCTTTCTTGGAATTCACCTCCTGTTTCAAAGGACTTAGTTCACTGAGGGAACAGAAAAAGGAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 72 bp CAAGCCTTTGGTAAGATAGTGTGTACAAAGCCTTTGTaGTTTAGTTTTGTCATAATAAGAGGCTTAGGTGGC +
Preference number: 4 (lower is better)
Translates to: QAFGKIVCTKPL*FSFVIIRGLGG
Trigger: GCCACCTAAGCCTCTTATTATGACAAAACTAAACAACAAAGGCTTTGTACACACTATCTTACCAAAGGCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 72 bp AGCAGAGATTATGATAGGGTAAGGAAGTACTTAGAGTaGATGGGACTGTATCTACTGAATATCATCAGATAT +
Preference number: 4 (lower is better)
Translates to: SRDYDRVRKYLE*MGLYLLNIIRY
Trigger: ATATCTGATGATATTCAGTAGATACAGTCCCATCAACTCTAAGTACTTCCTTACCCTATCATAATCTCTGCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
3UTR CAA 72 bp AAGCAAGCCTTTGGTAAGATAGTGTGTACAAAGCCTTaGTTGTTTAGTTTTGTCATAATAAGAGGCTTAGGT +
Preference number: 4 (lower is better)
Translates to: KQAFGKIVCTKP*LFSFVIIRGLG
Trigger: ACCTAAGCCTCTTATTATGACAAAACTAAACAACAAAGGCTTTGTACACACTATCTTACCAAAGGCTTGCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
CDS CCA 90 bp GCAGGAAATTCGTCCTTGGGGAAACTGGGAGGTTCAGTGACTAAGTaGTTAATGGACGAGGCATTGGACAGGCCTGGAAACAGCAGGGCT +
Preference number: 5 (lower is better)
Translates to: AGNSSLGKLGGSVTK*LMDEALDRPGNSRA
Trigger: AGCCCTGCTGTTTCCAGGCCTGTCCAATGCCTCGTCCATTAACCACTTAGTCACTGAACCTCCCAGTTTCCCCAAGGACGAATTTCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039075.8
CDS CCA 90 bp GCAGGAAATTCGTCCTTGGGGAAACTGGGAGGTTCAGTGACTAAGTaGTTAATGGACGAGGCATTGGACAGGCCTGCTGGAAACAGCAGG +
Preference number: 5 (lower is better)
Translates to: AGNSSLGKLGGSVTK*LMDEALDRPAGNSR
Trigger: CCTGCTGTTTCCAGCAGGCCTGTCCAATGCCTCGTCCATTAACCACTTAGTCACTGAACCTCCCAGTTTCCCCAAGGACGAATTTCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
CDS CCA 72 bp TCGTCCTTGGGGAAACTGGGAGGTTCAGTGACTAAGTaGTTAATGGACGAGGCATTGGACAGGCCTGCTGGA +
Preference number: 6 (lower is better)
Translates to: SSLGKLGGSVTK*LMDEALDRPAG
Trigger: TCCAGCAGGCCTGTCCAATGCCTCGTCCATTAACCACTTAGTCACTGAACCTCCCAGTTTCCCCAAGGACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110767.2
CDS CCA 72 bp TCGTCCTTGGGGAAACTGGGAGGTTCAGTGACTAAGTaGTTAATGGACGAGGCATTGGACAGGCCTGGAAAC +
Preference number: 6 (lower is better)
Translates to: SSLGKLGGSVTK*LMDEALDRPGN
Trigger: GTTTCCAGGCCTGTCCAATGCCTCGTCCATTAACCACTTAGTCACTGAACCTCCCAGTTTCCCCAAGGACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039075.8
CDS CAA 72 bp GGAGGTTCAGTGACTAAGTGGTTAATGGACGAGGCATaGGACAGGCCTGGAAACAGCAGGGCTGCAAAAAGT +
Preference number: 6 (lower is better)
Translates to: GGSVTKWLMDEA*DRPGNSRAAKS
Trigger: ACTTTTTGCAGCCCTGCTGTTTCCAGGCCTGTCCAATGCCTCGTCCATTAACCACTTAGTCACTGAACCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039075.8
CDS TCA 72 bp AGTATTCTTGACATTGTCCTTCACTTTTCTTGCAGTTaGCAATTTGGTAATTTGGTTCAGGCTCGTGGTAAG +
Preference number: 6 (lower is better)
Translates to: SILDIVLHFSCS*QFGNLVQARGK
Trigger: CTTACCACGAGCCTGAACCAAATTACCAAATTGTCAACTGCAAGAAAAGTGAAGGACAATGTCAAGAATACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039075.8