Pregenerated sensors for SPAG11A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079842

Ensembl transcript IDs: ENSMUST00000058955.5

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR GCA 90 bp	CAAATGTTTATTGAGTATGCACCGTCAGCCACACATACTCAAAGCCTTTGGGGCCACCCTTCAGTTGCTTaGGCCCCACATTCCAGATCT	+
Preference number: 2 (lower is better) Translates to: QMFIEYAPSATHTQSLWGHPSVA*APHSRS Trigger: AGATCTGGAATGTGGGGCGCAAGCAACTGAAGGGTG...GCCCCAAAGGCTTTGAGTATGTGTGGCTGACGGTGCATACTCAATAAACATTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058955.5
3UTR CAA 90 bp	CACCGGACCTTTGCCTCGGTGATAGATTTATTTAGCAAATGTTTATaGAGTATGCACCGTCAGCCACACATACTCAAAGCCTTTGGGGCA	+
Preference number: 2 (lower is better) Translates to: HRTFASVIDLFSKCL*SMHRQPHILKAFGA Trigger: TGCCCCAAAGGCTTTGAGTATGTGTGGCTGACGGTGCATACTCAATAAACATTTGCTAAATAAATCTATCACCGAGGCAAAGGTCCGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058955.5
3UTR-3UTR CCA 90 bp	TCCTTTCACCGGACCTTTGCCTCGGTGATAGATTTATTTAGCAAATGTTTATTGCATACTCAAAGCCTTTaGGGCATTTCCAAGTCTCCA	+
Preference number: 2 (lower is better) Translates to: SFHRTFASVIDLFSKCLLHTQSL*GISKSP Trigger: TGGAGACTTGGAAATGCCCCAAAGGCTTTGAGTATG...CAATAAACATTTGCTAAATAAATCTATCACCGAGGCAAAGGTCCGGTGAAAGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058955.5
3UTR GCA 72 bp	TTTGGGGCATTTCCAAGTCTCCACCCTTCAGTTGCTTaGGCCCCACATTCCAGATCTCCCAACCTCAGTCTT	+
Preference number: 3 (lower is better) Translates to: FGAFPSLHPSVA*APHSRSPNLSL Trigger: AAGACTGAGGTTGGGAGATCTGGAATGTGGGGCGCAAGCAACTGAAGGGTGGAGACTTGGAAATGCCCCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058955.5
3UTR CAA 72 bp	CTTTGGGGCATTTCCAAGTCTCCACCCTTCAGTTGCTaGCGCCCCACATTCCAGATCTCCCAACCTCAGTCT	+
Preference number: 4 (lower is better) Translates to: LWGISKSPPFSC*RPTFQISQPQS Trigger: AGACTGAGGTTGGGAGATCTGGAATGTGGGGCGCAAGCAACTGAAGGGTGGAGACTTGGAAATGCCCCAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058955.5
CDS-3UTR CCA 90 bp	AAATGTTTATTGAGTATGCACCGTCAGCCACACATACTCAAAGCCTTTGGGGCAATGAAGAGCCTGCAGTaGCCCTGTTGCATGAGGCAC	+
Preference number: 4 (lower is better) Translates to: KCLLSMHRQPHILKAFGAMKSLQ*PCCMRH Trigger: GTGCCTCATGCAACAGGGCCACTGCAGGCTCTTCAT...TGCCCCAAAGGCTTTGAGTATGTGTGGCTGACGGTGCATACTCAATAAACATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058955.5
CDS-3UTR TCA 90 bp	TTATTTAGCAAATGTTTATTGAGTATGCACCGTCAGCCACACATACTCAAAGCCGGCACACGGTGTTTCTaGTTCCGGGTGGGATGTCCC	+
Preference number: 4 (lower is better) Translates to: LFSKCLLSMHRQPHILKAGTRCF*FRVGCP Trigger: GGGACATCCCACCCGGAATCAGAAACACCGTGTGCC...GGCTTTGAGTATGTGTGGCTGACGGTGCATACTCAATAAACATTTGCTAAATAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058955.5
CDS CAA 72 bp	ACCAGAACGGCACATGAAGAGCCTGCAGTGGCCCTGTaGCATGAGGCACACGGTGTTTCTGATTCCGGGTGG	+
Preference number: 6 (lower is better) Translates to: TRTAHEEPAVAL*HEAHGVSDSGW Trigger: CCACCCGGAATCAGAAACACCGTGTGCCTCATGCAACAGGGCCACTGCAGGCTCTTCATGTGCCGTTCTGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058955.5

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