Pregenerated sensors for SPACA9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026809Ensembl transcript IDs: ENSMUST00000102877.8, ENSMUST00000124840.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACCGAGAAGGCTGTTGGTaGCAGGGGTGCCAGAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: EVVEHFILECLPLRKQQYREGCW*QGCQSA Trigger: TGCACTCTGGCACCCCTGTCACCAACAGCCTTCTCG...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR TCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGACGAGAAGGCTGTTGGTaGCAGGGGTGCCAGAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRREGCW*QGCQSA Trigger: TGCACTCTGGCACCCCTGTCACCAACAGCCTTCTCG...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR TCA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGGGCCTCAAAGTGCTaGCAGAGCTTGCTGAGCTCG | + |
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Preference number: 4 (lower is better) Translates to: EVVEHFILECLPLRKQQYRASKC*QSLLSS Trigger: CGAGCTCAGCAAGCTCTGTCAGCACTTTGAGGCCCT...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR TCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAAGGGCCTCAAAGTGCTaGCAGAGCTTGCTGAGCTCG | + |
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Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRRASKC*QSLLSS Trigger: CGAGCTCAGCAAGCTCTGTCAGCACTTTGAGGCCCT...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR TCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAGCGGATACTTGGCTCTaGGGCTGCTCAAGTCATTGC | + |
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Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRADTWL*GCSSHC Trigger: GCAATGACTTGAGCAGCCTCAGAGCCAAGTATCCGC...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR GCA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACACTTCTGCTCGATGCTaGGGAGGGACTCTTTCACCT | + |
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Preference number: 4 (lower is better) Translates to: EVVEHFILECLPLRKQQYTSARC*GGTLSP Trigger: AGGTGAAAGAGTCCCTCCGCAGCATCGAGCAGAAGT...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR GCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAACTTCTGCTCGATGCTaGGGAGGGACTCTTTCACCT | + |
|
Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRTSARC*GGTLSP Trigger: AGGTGAAAGAGTCCCTCCGCAGCATCGAGCAGAAGT...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR CCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAGCACCTGCTCGATACTaGAGATGGGCCGGATTTTGT | + |
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Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRAPARY*RWAGFC Trigger: ACAAAATCCGGCCCATCTCCAGTATCGAGCAGGTGC...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR GCA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAAGAGCTTATACTTCTaGTCGATGCTGCGGAGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: EVVEHFILECLPLRKQQYKSLYF*SMLRRD Trigger: GTCCCTCCGCAGCATCGAGCAGAAGTATAAGCTCTT...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR GCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAAAGAGCTTATACTTCTaGTCGATGCTGCGGAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRKSLYF*SMLRRD Trigger: GTCCCTCCGCAGCATCGAGCAGAAGTATAAGCTCTT...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR GCA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACCATGCTGCAGCACTTTaGGAGGCAGCTTCTCAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: EVVEHFILECLPLRKQQYHAAAL*EAASQN Trigger: ATTCTGAGAAGCTGCCTCGCAAAGTGCTGCAGCATG...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR GCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGACATGCTGCAGCACTTTaGGAGGCAGCTTCTCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRHAAAL*EAASQN Trigger: ATTCTGAGAAGCTGCCTCGCAAAGTGCTGCAGCATG...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR CCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAGAATCCGCCGGTGGGTaGAGTTATTGCAGTAGTGTT | + |
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Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRESAGG*SYCSSV Trigger: AACACTACTGCAATAACTCCACCCACCGGCGGATTC...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR GCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGATATACTTCTGCTCGATaGTGCGGAGGGACTCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRYTSAR*CGGTLS Trigger: TGAAAGAGTCCCTCCGCAGCATCGAGCAGAAGTATA...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR GCA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACGGTGGGTGGAGTTATTaGAGTAGTGTTCCATGTAGC | + |
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Preference number: 4 (lower is better) Translates to: EVVEHFILECLPLRKQQYGGWSY*SSVPCS Trigger: GCTACATGGAACACTACTGCAATAACTCCACCCACC...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR GCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAGGTGGGTGGAGTTATTaGAGTAGTGTTCCATGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRGGWSY*SSVPCS Trigger: GCTACATGGAACACTACTGCAATAACTCCACCCACC...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR TCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAGGCAGCTTCTCAGAATaGGCAATCCACTCTTTCATA | + |
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Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRGSFSE*AIHSFI Trigger: TATGAAAGAGTGGATTGCTCATTCTGAGAAGCTGCC...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR CCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAGTGAACTGTTGCTGCTaGAAGAGCTTATACTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRVNCCC*KSLYFC Trigger: GCAGAAGTATAAGCTCTTCCAGCAGCAACAGTTCAC...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR TCA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGTCATTGCTTTGGCTaGCCAGGGTTTTACATTTCT | + |
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Preference number: 4 (lower is better) Translates to: EVVEHFILECLPLRKQQYSHCFG*PGFYIS Trigger: AGAAATGTAAAACCCTGGTCAGCCAAAGCAATGACT...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR GCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAAAGGTGAACTGTTGCTaGTGGAAGAGCTTATACTTC | + |
|
Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRKVNCC*WKSLYF Trigger: GAAGTATAAGCTCTTCCAGCAGCAACAGTTCACCTT...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR CCA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGACTCAAGTCATTGCTTTaGCTGACCAGGGTTTTACAT | + |
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Preference number: 4 (lower is better) Translates to: VVEHFILECLPLRKQQYRLKSLL*LTRVLH Trigger: ATGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAG...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS TCA 90 bp | AGGCTGTTGGTGACAGGGGTGCCAGAGTGCAGGGCCTCAAAGTGCTaGCAGAGCTTGCTGAGCTCGGAGCAGATGTCCATGAACATGATC | + |
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Preference number: 5 (lower is better) Translates to: RLLVTGVPECRASKC*QSLLSSEQMSMNMI Trigger: GATCATGTTCATGGACATCTGCTCCGAGCTCAGCAAGCTCTGTCAGCACTTTGAGGCCCTGCACTCTGGCACCCCTGTCACCAACAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS GCA 90 bp | GCATTCTCCCGGCAGTGCTCCAGAGCCGCAATGAAGGTGAACTGTTaGTGCTGGAAGAGCTTATACTTCTGCTCGATGCTGCGGAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: AFSRQCSRAAMKVNC*CWKSLYFCSMLRRD Trigger: GTCCCTCCGCAGCATCGAGCAGAAGTATAAGCTCTTCCAGCAGCAACAGTTCACCTTCATTGCGGCTCTGGAGCACTGCCGGGAGAATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS GCA 90 bp | ATACTGGAGATGGGCCGGATTTTGTCGTGGGCATTCTCCCGGCAGTaGTCCAGAGCCGCAATGAAGGTGAACTGTTGCTGCTGGAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: ILEMGRILSWAFSRQ*SRAAMKVNCCCWKS Trigger: GCTCTTCCAGCAGCAACAGTTCACCTTCATTGCGGCTCTGGAGCACTGCCGGGAGAATGCCCACGACAAAATCCGGCCCATCTCCAGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS GCA 90 bp | TTCTCCCGGCAGTGCTCCAGAGCCGCAATGAAGGTGAACTGTTGCTaGTGGAAGAGCTTATACTTCTGCTCGATGCTGCGGAGGGACTCT | + |
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Preference number: 5 (lower is better) Translates to: FSRQCSRAAMKVNCC*WKSLYFCSMLRRDS Trigger: AGAGTCCCTCCGCAGCATCGAGCAGAAGTATAAGCTCTTCCAGCAGCAACAGTTCACCTTCATTGCGGCTCTGGAGCACTGCCGGGAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CCA 90 bp | TCCCGGCAGTGCTCCAGAGCCGCAATGAAGGTGAACTGTTGCTGCTaGAAGAGCTTATACTTCTGCTCGATGCTGCGGAGGGACTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: SRQCSRAAMKVNCCC*KSLYFCSMLRRDSF Trigger: GAAAGAGTCCCTCCGCAGCATCGAGCAGAAGTATAAGCTCTTCCAGCAGCAACAGTTCACCTTCATTGCGGCTCTGGAGCACTGCCGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR CAA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAGAGATGGGCCGGATTTaGTCGTGGGCATTCTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: VVEHFILECLPLRKQQYREMGRI*SWAFSR Trigger: CCGGGAGAATGCCCACGACAAAATCCGGCCCATCTC...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CCA 90 bp | ACTTCGTGCGGATACTTGGCTCTGAGGCTGCTCAAGTCATTGCTTTaGCTGACCAGGGTTTTACATTTCTCGAGAAGGCTGTTGGTGACA | + |
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Preference number: 5 (lower is better) Translates to: TSCGYLALRLLKSLL*LTRVLHFSRRLLVT Trigger: TGTCACCAACAGCCTTCTCGAGAAATGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCTCAGAGCCAAGTATCCGCACGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR CAA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACTTCTCGAGAAGGCTGTaGGTGACAGGGGTGCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: EVVEHFILECLPLRKQQYFSRRL*VTGVPE Trigger: CTCTGGCACCCCTGTCACCAACAGCCTTCTCGAGAA...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR CAA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGATTCTCGAGAAGGCTGTaGGTGACAGGGGTGCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: VVEHFILECLPLRKQQYRFSRRL*VTGVPE Trigger: CTCTGGCACCCCTGTCACCAACAGCCTTCTCGAGAA...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS TCA 90 bp | TATGTCGTCCCATGCTGCAGCACTTTGCGAGGCAGCTTCTCAGAATaGGCAATCCACTCTTTCATAAAGTCCAGGACTATAGGGATGAGG | + |
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Preference number: 5 (lower is better) Translates to: YVVPCCSTLRGSFSE*AIHSFIKSRTIGMR Trigger: CCTCATCCCTATAGTCCTGGACTTTATGAAAGAGTGGATTGCTCATTCTGAGAAGCTGCCTCGCAAAGTGCTGCAGCATGGGACGACATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR CAA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACCCATGCTGCAGCACTTaGCGAGGCAGCTTCTCAGAA | + |
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Preference number: 5 (lower is better) Translates to: EVVEHFILECLPLRKQQYPCCST*RGSFSE Trigger: TTCTGAGAAGCTGCCTCGCAAAGTGCTGCAGCATGG...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR CAA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGACCATGCTGCAGCACTTaGCGAGGCAGCTTCTCAGAA | + |
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Preference number: 5 (lower is better) Translates to: VVEHFILECLPLRKQQYRPCCST*RGSFSE Trigger: TTCTGAGAAGCTGCCTCGCAAAGTGCTGCAGCATGG...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR CAA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGGCTGCTCAAGTCATaGCTTTGGCTGACCAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: EVVEHFILECLPLRKQQYRLLKS*LWLTRV Trigger: AACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCT...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR CAA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAAGGCTGCTCAAGTCATaGCTTTGGCTGACCAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: VVEHFILECLPLRKQQYRRLLKS*LWLTRV Trigger: AACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCT...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS-3UTR CAA 90 bp | GAAGTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACGCTCAAGTCATTGCTTaGGCTGACCAGGGTTTTACA | + |
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Preference number: 5 (lower is better) Translates to: EVVEHFILECLPLRKQQYAQVIA*ADQGFT Trigger: TGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAGC...GTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCACTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102877.8 |
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| CDS-3UTR CAA 90 bp | GTGGTAGAACACTTTATTCTTGAATGTCTCCCCCTGAGGAAGCAACAGTACAGAAATGAAGGTGAACTGTaGCTGCTGGAAGAGCTTATA | + |
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Preference number: 5 (lower is better) Translates to: VVEHFILECLPLRKQQYRNEGEL*LLEELI Trigger: TATAAGCTCTTCCAGCAGCAACAGTTCACCTTCATT...TCTGTACTGTTGCTTCCTCAGGGGGAGACATTCAAGAATAAAGTGTTCTACCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CAA 72 bp | CTCTGCACCTGCTCGATACTGGAGATGGGCCGGATTTaGTCGTGGGCATTCTCCCGGCAGTGCTCCAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: LCTCSILEMGRI*SWAFSRQCSRA Trigger: GGCTCTGGAGCACTGCCGGGAGAATGCCCACGACAAAATCCGGCCCATCTCCAGTATCGAGCAGGTGCAGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS TCA 72 bp | GTGACAGGGGTGCCAGAGTGCAGGGCCTCAAAGTGCTaGCAGAGCTTGCTGAGCTCGGAGCAGATGTCCATG | + |
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Preference number: 6 (lower is better) Translates to: VTGVPECRASKC*QSLLSSEQMSM Trigger: CATGGACATCTGCTCCGAGCTCAGCAAGCTCTGTCAGCACTTTGAGGCCCTGCACTCTGGCACCCCTGTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CCA 72 bp | ACCTGCTCGATACTGGAGATGGGCCGGATTTTGTCGTaGGCATTCTCCCGGCAGTGCTCCAGAGCCGCAATG | + |
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Preference number: 6 (lower is better) Translates to: TCSILEMGRILS*AFSRQCSRAAM Trigger: CATTGCGGCTCTGGAGCACTGCCGGGAGAATGCCCACGACAAAATCCGGCCCATCTCCAGTATCGAGCAGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS GCA 72 bp | ATGGGCCGGATTTTGTCGTGGGCATTCTCCCGGCAGTaGTCCAGAGCCGCAATGAAGGTGAACTGTTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: MGRILSWAFSRQ*SRAAMKVNCCC Trigger: GCAGCAACAGTTCACCTTCATTGCGGCTCTGGAGCACTGCCGGGAGAATGCCCACGACAAAATCCGGCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CAA 90 bp | GGCATTCTCCCGGCAGTGCTCCAGAGCCGCAATGAAGGTGAACTGTaGCTGCTGGAAGAGCTTATACTTCTGCTCGATGCTGCGGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: GILPAVLQSRNEGEL*LLEELILLLDAAEG Trigger: TCCCTCCGCAGCATCGAGCAGAAGTATAAGCTCTTCCAGCAGCAACAGTTCACCTTCATTGCGGCTCTGGAGCACTGCCGGGAGAATGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CAA 72 bp | TGGCTGACCAGGGTTTTACATTTCTCGAGAAGGCTGTaGGTGACAGGGGTGCCAGAGTGCAGGGCCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: WLTRVLHFSRRL*VTGVPECRASK Trigger: CTTTGAGGCCCTGCACTCTGGCACCCCTGTCACCAACAGCCTTCTCGAGAAATGTAAAACCCTGGTCAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS GCA 72 bp | CAGTGCTCCAGAGCCGCAATGAAGGTGAACTGTTGCTaGTGGAAGAGCTTATACTTCTGCTCGATGCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: QCSRAAMKVNCC*WKSLYFCSMLR Trigger: CCGCAGCATCGAGCAGAAGTATAAGCTCTTCCAGCAGCAACAGTTCACCTTCATTGCGGCTCTGGAGCACTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CAA 72 bp | CCGGCAGTGCTCCAGAGCCGCAATGAAGGTGAACTGTaGCTGCTGGAAGAGCTTATACTTCTGCTCGATGCT | + |
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Preference number: 6 (lower is better) Translates to: PAVLQSRNEGEL*LLEELILLLDA Trigger: AGCATCGAGCAGAAGTATAAGCTCTTCCAGCAGCAACAGTTCACCTTCATTGCGGCTCTGGAGCACTGCCGG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CAA 90 bp | CACTTCGTGCGGATACTTGGCTCTGAGGCTGCTCAAGTCATTGCTTaGGCTGACCAGGGTTTTACATTTCTCGAGAAGGCTGTTGGTGAC | + |
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Preference number: 6 (lower is better) Translates to: HFVRILGSEAAQVIA*ADQGFTFLEKAVGD Trigger: GTCACCAACAGCCTTCTCGAGAAATGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCTCAGAGCCAAGTATCCGCACGAAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CCA 72 bp | GGATACTTGGCTCTGAGGCTGCTCAAGTCATTGCTTTaGCTGACCAGGGTTTTACATTTCTCGAGAAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GYLALRLLKSLL*LTRVLHFSRRL Trigger: CAGCCTTCTCGAGAAATGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCTCAGAGCCAAGTATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CAA 72 bp | CGGATACTTGGCTCTGAGGCTGCTCAAGTCATTGCTTaGGCTGACCAGGGTTTTACATTTCTCGAGAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: RILGSEAAQVIA*ADQGFTFLEKA Trigger: AGCCTTCTCGAGAAATGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCTCAGAGCCAAGTATCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CAA 72 bp | TCGTGCGGATACTTGGCTCTGAGGCTGCTCAAGTCATaGCTTTGGCTGACCAGGGTTTTACATTTCTCGAGA | + |
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Preference number: 6 (lower is better) Translates to: SCGYLALRLLKS*LWLTRVLHFSR Trigger: TCTCGAGAAATGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCTCAGAGCCAAGTATCCGCACGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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| CDS CAA 90 bp | TTAACCACTTCGTGCGGATACTTGGCTCTGAGGCTGCTCAAGTCATaGCTTTGGCTGACCAGGGTTTTACATTTCTCGAGAAGGCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: LTTSCGYLALRLLKS*LWLTRVLHFSRRLL Trigger: CAACAGCCTTCTCGAGAAATGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCTCAGAGCCAAGTATCCGCACGAAGTGGTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102877.8 ENSMUST00000124840.2 |
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