Pregenerated sensors for SPACA6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000080316Ensembl transcript IDs: ENSMUST00000139969.8, ENSMUST00000150302.2, ENSMUST00000154301.2, ENSMUST00000172097.9, ENSMUST00000226899.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCGGCTCCGCCGGCGTCCGATTCATCACTTCCCGGAACGTGACCTaGAGCTCAGTGTCCTCAGGCGGAGGAGGGCCCGTCACGTTCAGA | + |
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Preference number: 1 (lower is better) Translates to: SGSAGVRFITSRNVT*SSVSSGGGGPVTFR Trigger: TCTGAACGTGACGGGCCCTCCTCCGCCTGAGGACACTGAGCTCCAGGTCACGTTCCGGGAAGTGATGAATCGGACGCCGGCGGAGCCGGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR CCA 90 bp | GCAGCGGTGGCCGCGAGCAGGAATAGGTTGCCAAGCGTCAGAGCCTaGGGGTTGGTAAGTAGTTCGCCTAGGCTGGGGCTCCAGGGCTGG | + |
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Preference number: 1 (lower is better) Translates to: AAVAASRNRLPSVRA*GLVSSSPRLGLQGW Trigger: CCAGCCCTGGAGCCCCAGCCTAGGCGAACTACTTACCAACCCCCAGGCTCTGACGCTTGGCAACCTATTCCTGCTCGCGGCCACCGCTGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000139969.8 ENSMUST00000154301.2 ENSMUST00000226899.2 |
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| 3UTR TCA 90 bp | TCATTTCCGGCTCCGCCGGCGTCCGATTCATCACTTCCCGGAACGTaGCCTGGAGCTCAGTGTCCTCAGGCGGAGGAGGGCCCGTCACGT | + |
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Preference number: 1 (lower is better) Translates to: SFPAPPASDSSLPGT*PGAQCPQAEEGPSR Trigger: ACGTGACGGGCCCTCCTCCGCCTGAGGACACTGAGCTCCAGGTCACGTTCCGGGAAGTGATGAATCGGACGCCGGCGGAGCCGGAAATGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR CCA 90 bp | GGCGCTGGTCGTGCAGGATCACGCAGGAAAAGGTCCCACCGTGTTTaGGTTGCACTGGCCGTATTCGTGCCAGGTACCCGTGAGCCCCCG | + |
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Preference number: 1 (lower is better) Translates to: GAGRAGSRRKRSHRV*VALAVFVPGTREPP Trigger: CGGGGGCTCACGGGTACCTGGCACGAATACGGCCAGTGCAACCCAAACACGGTGGGACCTTTTCCTGCGTGATCCTGCACGACCAGCGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR CCA 90 bp | GCCTGGGGGTTGGTAAGTAGTTCGCCTAGGCTGGGGCTCCAGGGCTaGATCATTTCCGGCTCCGCCGGCGTCCGATTCATCACTTCCCGG | + |
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Preference number: 1 (lower is better) Translates to: AWGLVSSSPRLGLQG*IISGSAGVRFITSR Trigger: CCGGGAAGTGATGAATCGGACGCCGGCGGAGCCGGAAATGATCCAGCCCTGGAGCCCCAGCCTAGGCGAACTACTTACCAACCCCCAGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000139969.8 ENSMUST00000154301.2 ENSMUST00000226899.2 |
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| 3UTR CCA 90 bp | GTGCAGGATCACGCAGGAAAAGGTCCCACCGTGTTTGGGTTGCACTaGCCGTATTCGTGCCAGGTACCCGTGAGCCCCCGGCATATCACG | + |
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Preference number: 1 (lower is better) Translates to: VQDHAGKGPTVFGLH*PYSCQVPVSPRHIT Trigger: CGTGATATGCCGGGGGCTCACGGGTACCTGGCACGAATACGGCCAGTGCAACCCAAACACGGTGGGACCTTTTCCTGCGTGATCCTGCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR TCA 90 bp | GCCAGAGGGTGTGATGCACACCTAGAATCTGTATCACCTGGAAGTTaGAGGCAGGAGGATGAGAAGTTCATGGCCATTCTCAATTACTTT | + |
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Preference number: 1 (lower is better) Translates to: ARGCDAHLESVSPGS*RQEDEKFMAILNYF Trigger: AAAGTAATTGAGAATGGCCATGAACTTCTCATCCTCCTGCCTTCAACTTCCAGGTGATACAGATTCTAGGTGTGCATCACACCCTCTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| 3UTR TCA 90 bp | TGCACACCTAGAATCTGTATCACCTGGAAGTTGAAGGCAGGAGGATaGGAAGTTCATGGCCATTCTCAATTACTTTTGTGTCCTGTTGCT | + |
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Preference number: 1 (lower is better) Translates to: CTPRICITWKLKAGG*EVHGHSQLLLCPVA Trigger: AGCAACAGGACACAAAAGTAATTGAGAATGGCCATGAACTTCTCATCCTCCTGCCTTCAACTTCCAGGTGATACAGATTCTAGGTGTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| 3UTR CCA 90 bp | AATCTGTATCACCTGGAAGTTGAAGGCAGGAGGATGAGAAGTTCATaGCCATTCTCAATTACTTTTGTGTCCTGTTGCTGGGAGAAATTA | + |
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Preference number: 1 (lower is better) Translates to: NLYHLEVEGRRMRSS*PFSITFVSCCWEKL Trigger: TAATTTCTCCCAGCAACAGGACACAAAAGTAATTGAGAATGGCCATGAACTTCTCATCCTCCTGCCTTCAACTTCCAGGTGATACAGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| 3UTR-3UTR CCA 90 bp | CGCCGGCGTCCGATTCATCACTTCCCGGAACGTGACCTGGAGCTCAGTGTCCTCCGCGCCAGGGGGCGCTaGTCGTGCAGGATCACGCAG | + |
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Preference number: 2 (lower is better) Translates to: RRRPIHHFPERDLELSVLRARGR*SCRITQ Trigger: CTGCGTGATCCTGCACGACCAGCGCCCCCTGGCGCG...GAGGACACTGAGCTCCAGGTCACGTTCCGGGAAGTGATGAATCGGACGCCGGCG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR CAA 90 bp | CTGGTCGTGCAGGATCACGCAGGAAAAGGTCCCACCGTGTTTGGGTaGCACTGGCCGTATTCGTGCCAGGTACCCGTGAGCCCCCGGCAT | + |
|
Preference number: 2 (lower is better) Translates to: LVVQDHAGKGPTVFG*HWPYSCQVPVSPRH Trigger: ATGCCGGGGGCTCACGGGTACCTGGCACGAATACGGCCAGTGCAACCCAAACACGGTGGGACCTTTTCCTGCGTGATCCTGCACGACCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR-3UTR GCA 90 bp | CGCCGGCGTCCGATTCATCACTTCCCGGAACGTGACCTGGAGCTCAGTGTCCTCAGGGGGCGCTGGTCGTaGAGGATCACGCAGGAAAAG | + |
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Preference number: 2 (lower is better) Translates to: RRRPIHHFPERDLELSVLRGRWS*RITQEK Trigger: CTTTTCCTGCGTGATCCTGCACGACCAGCGCCCCCT...GAGGACACTGAGCTCCAGGTCACGTTCCGGGAAGTGATGAATCGGACGCCGGCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGCGGTGGCCGCGAGCAGGAATAGGTTGCCAAGCGTCAGAGCCTGGGGGTTGAGGTCCCACCGTGTTTaGGTTGCACTGGCCGTATTC | + |
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Preference number: 2 (lower is better) Translates to: AAVAASRNRLPSVRAWGLRSHRV*VALAVF Trigger: GAATACGGCCAGTGCAACCCAAACACGGTGGGACCT...CAACCCCCAGGCTCTGACGCTTGGCAACCTATTCCTGCTCGCGGCCACCGCTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR CAA 90 bp | GTGGCCGCGAGCAGGAATAGGTTGCCAAGCGTCAGAGCCTGGGGGTaGGTAAGTAGTTCGCCTAGGCTGGGGCTCCAGGGCTGGATCATT | + |
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Preference number: 2 (lower is better) Translates to: VAASRNRLPSVRAWG*VSSSPRLGLQGWII Trigger: AATGATCCAGCCCTGGAGCCCCAGCCTAGGCGAACTACTTACCAACCCCCAGGCTCTGACGCTTGGCAACCTATTCCTGCTCGCGGCCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000139969.8 ENSMUST00000154301.2 ENSMUST00000226899.2 |
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| 3UTR CAA 90 bp | ACACTGGCAGACCCAAGTGCAGCGGTGGCCGCGAGCAGGAATAGGTaGCCAAGCGTCAGAGCCTGGGGGTTGGTAAGTAGTTCGCCTAGG | + |
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Preference number: 2 (lower is better) Translates to: TLADPSAAVAASRNR*PSVRAWGLVSSSPR Trigger: CCTAGGCGAACTACTTACCAACCCCCAGGCTCTGACGCTTGGCAACCTATTCCTGCTCGCGGCCACCGCTGCACTTGGGTCTGCCAGTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000139969.8 ENSMUST00000154301.2 ENSMUST00000226899.2 |
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| 3UTR TCA 72 bp | GCTCCGCCGGCGTCCGATTCATCACTTCCCGGAACGTaGCCTGGAGCTCAGTGTCCTCAGGCGGAGGAGGGC | + |
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Preference number: 3 (lower is better) Translates to: APPASDSSLPGT*PGAQCPQAEEG Trigger: GCCCTCCTCCGCCTGAGGACACTGAGCTCCAGGTCACGTTCCGGGAAGTGATGAATCGGACGCCGGCGGAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR CCA 72 bp | GCCGGCGTCCGATTCATCACTTCCCGGAACGTGACCTaGAGCTCAGTGTCCTCAGGCGGAGGAGGGCCCGTC | + |
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Preference number: 3 (lower is better) Translates to: AGVRFITSRNVT*SSVSSGGGGPV Trigger: GACGGGCCCTCCTCCGCCTGAGGACACTGAGCTCCAGGTCACGTTCCGGGAAGTGATGAATCGGACGCCGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR CCA 72 bp | GCCGCGAGCAGGAATAGGTTGCCAAGCGTCAGAGCCTaGGGGTTGGTAAGTAGTTCGCCTAGGCTGGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: AASRNRLPSVRA*GLVSSSPRLGL Trigger: GAGCCCCAGCCTAGGCGAACTACTTACCAACCCCCAGGCTCTGACGCTTGGCAACCTATTCCTGCTCGCGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000139969.8 ENSMUST00000154301.2 ENSMUST00000226899.2 |
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| 3UTR CCA 72 bp | TTGGTAAGTAGTTCGCCTAGGCTGGGGCTCCAGGGCTaGATCATTTCCGGCTCCGCCGGCGTCCGATTCATC | + |
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Preference number: 3 (lower is better) Translates to: LVSSSPRLGLQG*IISGSAGVRFI Trigger: GATGAATCGGACGCCGGCGGAGCCGGAAATGATCCAGCCCTGGAGCCCCAGCCTAGGCGAACTACTTACCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000139969.8 ENSMUST00000154301.2 ENSMUST00000226899.2 |
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| 3UTR CCA 72 bp | CGTGCAGGATCACGCAGGAAAAGGTCCCACCGTGTTTaGGTTGCACTGGCCGTATTCGTGCCAGGTACCCGT | + |
|
Preference number: 3 (lower is better) Translates to: RAGSRRKRSHRV*VALAVFVPGTR Trigger: ACGGGTACCTGGCACGAATACGGCCAGTGCAACCCAAACACGGTGGGACCTTTTCCTGCGTGATCCTGCACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR TCA 72 bp | TGTGATGCACACCTAGAATCTGTATCACCTGGAAGTTaGAGGCAGGAGGATGAGAAGTTCATGGCCATTCTC | + |
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Preference number: 3 (lower is better) Translates to: CDAHLESVSPGS*RQEDEKFMAIL Trigger: GAGAATGGCCATGAACTTCTCATCCTCCTGCCTTCAACTTCCAGGTGATACAGATTCTAGGTGTGCATCACA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| 3UTR TCA 72 bp | AGAATCTGTATCACCTGGAAGTTGAAGGCAGGAGGATaGGAAGTTCATGGCCATTCTCAATTACTTTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: RICITWKLKAGG*EVHGHSQLLLC Trigger: ACACAAAAGTAATTGAGAATGGCCATGAACTTCTCATCCTCCTGCCTTCAACTTCCAGGTGATACAGATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| CDS-3UTR CCA 90 bp | TTGCCAAGCGTCAGAGCCTGGGGGTTGGTAAGTAGTTCGCCTAGGCTGGGGCTCCGCGCCAGGGGGCGCTaGTCGTGCAGGATCACGCAG | + |
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Preference number: 4 (lower is better) Translates to: LPSVRAWGLVSSSPRLGLRARGR*SCRITQ Trigger: CTGCGTGATCCTGCACGACCAGCGCCCCCTGGCGCG...GAGCCCCAGCCTAGGCGAACTACTTACCAACCCCCAGGCTCTGACGCTTGGCAA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000154301.2 |
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| 3UTR CAA 72 bp | AGCAGGAATAGGTTGCCAAGCGTCAGAGCCTGGGGGTaGGTAAGTAGTTCGCCTAGGCTGGGGCTCCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: SRNRLPSVRAWG*VSSSPRLGLQG Trigger: GCCCTGGAGCCCCAGCCTAGGCGAACTACTTACCAACCCCCAGGCTCTGACGCTTGGCAACCTATTCCTGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000139969.8 ENSMUST00000154301.2 ENSMUST00000226899.2 |
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| CDS-3UTR CCA 90 bp | GTTCAGATAAAAGTAGAGCCGCGCCAGGGGGCGCTGGTCGTGCAGGATCACGCAAGCCTAGCCACCTCCTaGAGACCACAAGGAGGGATG | + |
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Preference number: 4 (lower is better) Translates to: VQIKVEPRQGALVVQDHASLATS*RPQGGM Trigger: CATCCCTCCTTGTGGTCTCCAGGAGGTGGCTAGGCT...TGCGTGATCCTGCACGACCAGCGCCCCCTGGCGCGGCTCTACTTTTATCTGAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| CDS-3UTR CCA 90 bp | CGTCCGATTCATCACTTCCCGGAACGTGACCTGGAGCTCAGTGTCCTCAGGCGGAGCCTAGCCACCTCCTaGAGACCACAAGGAGGGATG | + |
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Preference number: 4 (lower is better) Translates to: RPIHHFPERDLELSVLRRSLATS*RPQGGM Trigger: CATCCCTCCTTGTGGTCTCCAGGAGGTGGCTAGGCT...CCGCCTGAGGACACTGAGCTCCAGGTCACGTTCCGGGAAGTGATGAATCGGACG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR CAA 72 bp | CAGGATCACGCAGGAAAAGGTCCCACCGTGTTTGGGTaGCACTGGCCGTATTCGTGCCAGGTACCCGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: QDHAGKGPTVFG*HWPYSCQVPVS Trigger: GCTCACGGGTACCTGGCACGAATACGGCCAGTGCAACCCAAACACGGTGGGACCTTTTCCTGCGTGATCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| 3UTR CAA 72 bp | TCGTGCAGGATCACGCAGGAAAAGGTCCCACCGTGTTaGGGTTGCACTGGCCGTATTCGTGCCAGGTACCCG | + |
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Preference number: 4 (lower is better) Translates to: SCRITQEKVPPC*GCTGRIRARYP Trigger: CGGGTACCTGGCACGAATACGGCCAGTGCAACCCAAACACGGTGGGACCTTTTCCTGCGTGATCCTGCACGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| CDS-3UTR TCA 90 bp | AGGCTGGGGCTCCAGGGCTGGATCATTTCCGGCTCCGCCGGCGTCCGATTCATCCTAGCAGCCTTCTCCTaGAGAGAAACTGTCATCTGT | + |
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Preference number: 4 (lower is better) Translates to: RLGLQGWIISGSAGVRFILAAFS*RETVIC Trigger: ACAGATGACAGTTTCTCTTCAGGAGAAGGCTGCTAG...GATGAATCGGACGCCGGCGGAGCCGGAAATGATCCAGCCCTGGAGCCCCAGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| CDS-3UTR CCA 90 bp | CAGATAAAAGTAGAGCCGCGCCAGGGGGCGCTGGTCGTGCAGGATCACGCAGGACAAGAAAACAAAGCCTaGTCCCCTCGGTTCACCAGC | + |
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Preference number: 4 (lower is better) Translates to: QIKVEPRQGALVVQDHAGQENKA*SPRFTS Trigger: GCTGGTGAACCGAGGGGACCAGGCTTTGTTTTCTTG...TCCTGCGTGATCCTGCACGACCAGCGCCCCCTGGCGCGGCTCTACTTTTATCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| CDS-3UTR CCA 90 bp | GTGGCCGCGAGCAGGAATAGGTTGCCAAGCGTCAGAGCCTGGGGGTTGGTAAGTAGGTCCCACCGTGTTTaGGTTGCACTGGCCGTATTC | + |
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Preference number: 4 (lower is better) Translates to: VAASRNRLPSVRAWGLVSRSHRV*VALAVF Trigger: GAATACGGCCAGTGCAACCCAAACACGGTGGGACCT...ACTTACCAACCCCCAGGCTCTGACGCTTGGCAACCTATTCCTGCTCGCGGCCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154301.2 |
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| CDS-3UTR TCA 90 bp | GCCTGGGGGTTGGTAAGTAGTTCGCCTAGGCTGGGGCTCCAGGGCTGGATCATTTTCACCAGCATGTCCTaGACTGGACAATCGAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: AWGLVSSSPRLGLQGWIIFTSMS*TGQSRG Trigger: GCCTCTCGATTGTCCAGTTCAGGACATGCTGGTGAA...AATGATCCAGCCCTGGAGCCCCAGCCTAGGCGAACTACTTACCAACCCCCAGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| CDS-3UTR TCA 90 bp | GTTCAGATAAAAGTAGAGCCGCGCCAGGGGGCGCTGGTCGTGCAGGATCACGCATTCACCAGCATGTCCTaGACTGGACAATCGAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: VQIKVEPRQGALVVQDHAFTSMS*TGQSRG Trigger: GCCTCTCGATTGTCCAGTTCAGGACATGCTGGTGAA...TGCGTGATCCTGCACGACCAGCGCCCCCTGGCGCGGCTCTACTTTTATCTGAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| CDS-3UTR CCA 90 bp | GCCTGGGGGTTGGTAAGTAGTTCGCCTAGGCTGGGGCTCCAGGGCTGGATCATTCAAGAAAACAAAGCCTaGTCCCCTCGGTTCACCAGC | + |
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Preference number: 4 (lower is better) Translates to: AWGLVSSSPRLGLQGWIIQENKA*SPRFTS Trigger: GCTGGTGAACCGAGGGGACCAGGCTTTGTTTTCTTG...AATGATCCAGCCCTGGAGCCCCAGCCTAGGCGAACTACTTACCAACCCCCAGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| CDS-3UTR TCA 90 bp | GGGGCGCTGGTCGTGCAGGATCACGCAGGAAAAGGTCCCACCGTGTTTGGGTTGCTAGCAGCCTTCTCCTaGAGAGAAACTGTCATCTGT | + |
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Preference number: 4 (lower is better) Translates to: GALVVQDHAGKGPTVFGLLAAFS*RETVIC Trigger: ACAGATGACAGTTTCTCTTCAGGAGAAGGCTGCTAG...CAACCCAAACACGGTGGGACCTTTTCCTGCGTGATCCTGCACGACCAGCGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| CDS-3UTR GCA 90 bp | GTGGCCGCGAGCAGGAATAGGTTGCCAAGCGTCAGAGCCTGGGGGTTGGTAAGTTCTTGGTTTCCTCTCTaGCCACAAACAGCTGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: VAASRNRLPSVRAWGLVSSWFPL*PQTAGR Trigger: TCTGCCAGCTGTTTGTGGGCAGAGAGGAAACCAAGA...ACTTACCAACCCCCAGGCTCTGACGCTTGGCAACCTATTCCTGCTCGCGGCCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| CDS-3UTR TCA 90 bp | CTGGTCGTGCAGGATCACGCAGGAAAAGGTCCCACCGTGTTTGGGTTGCACTGGTTGCAGCAGCATCTTTaGAGGCAAGCCAAAAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: LVVQDHAGKGPTVFGLHWLQQHL*RQAKRA Trigger: AGCCCTTTTGGCTTGCCTTCAAAGATGCTGCTGCAA...CCAGTGCAACCCAAACACGGTGGGACCTTTTCCTGCGTGATCCTGCACGACCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| CDS-3UTR TCA 90 bp | TTGCCAAGCGTCAGAGCCTGGGGGTTGGTAAGTAGTTCGCCTAGGCTGGGGCTCATTTCCAGGAATAAGTaGTCTCCGACTCTGGCAACT | + |
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Preference number: 4 (lower is better) Translates to: LPSVRAWGLVSSSPRLGLISRNK*SPTLAT Trigger: AGTTGCCAGAGTCGGAGATCACTTATTCCTGGAAAT...GAGCCCCAGCCTAGGCGAACTACTTACCAACCCCCAGGCTCTGACGCTTGGCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000139969.8 ENSMUST00000154301.2 ENSMUST00000226899.2 |
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| CDS-3UTR TCA 90 bp | AGGAATAGGTTGCCAAGCGTCAGAGCCTGGGGGTTGGTAAGTAGTTCGCCTAGGATTTCCAGGAATAAGTaGTCTCCGACTCTGGCAACT | + |
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Preference number: 4 (lower is better) Translates to: RNRLPSVRAWGLVSSSPRISRNK*SPTLAT Trigger: AGTTGCCAGAGTCGGAGATCACTTATTCCTGGAAAT...CCTAGGCGAACTACTTACCAACCCCCAGGCTCTGACGCTTGGCAACCTATTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000139969.8 ENSMUST00000154301.2 ENSMUST00000226899.2 |
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| CDS-3UTR GCA 90 bp | GTTCAGATAAAAGTAGAGCCGCGCCAGGGGGCGCTGGTCGTGCAGGATCACGCACTTCAAGCTCATTTCTaGACAGGTTTATCTTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: VQIKVEPRQGALVVQDHALQAHF*TGLSWF Trigger: AAACCAAGATAAACCTGTGCAGAAATGAGCTTGAAG...TGCGTGATCCTGCACGACCAGCGCCCCCTGGCGCGGCTCTACTTTTATCTGAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| CDS-3UTR CCA 90 bp | AGGAATAGGTTGCCAAGCGTCAGAGCCTGGGGGTTGGTAAGTAGTTCGCCTAGGTGCACAGGTTTATCTTaGTTTCCTCTCTGCCCACAA | + |
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Preference number: 4 (lower is better) Translates to: RNRLPSVRAWGLVSSSPRCTGLS*FPLCPQ Trigger: TTGTGGGCAGAGAGGAAACCAAGATAAACCTGTGCA...CCTAGGCGAACTACTTACCAACCCCCAGGCTCTGACGCTTGGCAACCTATTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| CDS-3UTR GCA 90 bp | ATTTCCAGGACAGATGTAGGATCAGGATTTGTTAGTTGCCACTTAAGTACCATCAGGGGGCGCTGGTCGTaGAGGATCACGCAGGAAAAG | + |
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Preference number: 4 (lower is better) Translates to: ISRTDVGSGFVSCHLSTIRGRWS*RITQEK Trigger: CTTTTCCTGCGTGATCCTGCACGACCAGCGCCCCCT...GATGGTACTTAAGTGGCAACTAACAAATCCTGATCCTACATCTGTCCTGGAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154301.2 |
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| CDS-3UTR TCA 90 bp | TCCAGGACAGATGTAGGATCAGGATTTGTTAGTTGCCACTTAAGTACCATCGAAATTTCCAGGAATAAGTaGTCTCCGACTCTGGCAACT | + |
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Preference number: 4 (lower is better) Translates to: SRTDVGSGFVSCHLSTIEISRNK*SPTLAT Trigger: AGTTGCCAGAGTCGGAGATCACTTATTCCTGGAAAT...TTCGATGGTACTTAAGTGGCAACTAACAAATCCTGATCCTACATCTGTCCTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000154301.2 ENSMUST00000226899.2 |
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| CDS-3UTR CAA 90 bp | TCGCCTAGGCTGGGGCTCCAGGGCTGGATCATTTCCGGCTCCGCCGGCGTCCGACTGCACAGGTTTATCTaGGTTTCCTCTCTGCCCACA | + |
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Preference number: 5 (lower is better) Translates to: SPRLGLQGWIISGSAGVRLHRFI*VSSLPT Trigger: TGTGGGCAGAGAGGAAACCAAGATAAACCTGTGCAG...TCGGACGCCGGCGGAGCCGGAAATGATCCAGCCCTGGAGCCCCAGCCTAGGCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| CDS-3UTR CAA 90 bp | AGGAGGGCCCGTCACGTTCAGATAAAAGTAGAGCCGCGCCAGGGGGCGCTGGTCTTTGCAGCAGCATCTTaGAAGGCAAGCCAAAAGGGC | + |
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Preference number: 5 (lower is better) Translates to: RRARHVQIKVEPRQGALVFAAAS*KASQKG Trigger: GCCCTTTTGGCTTGCCTTCAAAGATGCTGCTGCAAA...GACCAGCGCCCCCTGGCGCGGCTCTACTTTTATCTGAACGTGACGGGCCCTCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000139969.8 |
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| CDS CCA 90 bp | CAATCGAGAGGCAGATCGCAGAGTTTAGAAAAGCAGCCCGAGCAGTaGAAAAGCCTAGCCACCTCCTGGAGACCACAAGGAGGGATGCAG | + |
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Preference number: 5 (lower is better) Translates to: QSRGRSQSLEKQPEQ*KSLATSWRPQGGMQ Trigger: CTGCATCCCTCCTTGTGGTCTCCAGGAGGTGGCTAGGCTTTTCCACTGCTCGGGCTGCTTTTCTAAACTCTGCGATCTGCCTCTCGATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000139969.8 ENSMUST00000150302.2 ENSMUST00000172097.9 ENSMUST00000226899.2 |
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| CDS CCA 90 bp | GATCTTCAAAAGCCCCTTCAAGCTCATTTCTGCACAGGTTTATCTTaGTTTCCTCTCTGCCCACAAACAGCTGGCAGACACGGAGGCGTT | + |
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Preference number: 5 (lower is better) Translates to: DLQKPLQAHFCTGLS*FPLCPQTAGRHGGV Trigger: AACGCCTCCGTGTCTGCCAGCTGTTTGTGGGCAGAGAGGAAACCAAGATAAACCTGTGCAGAAATGAGCTTGAAGGGGCTTTTGAAGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000172097.9 |
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| CDS CCA 90 bp | GTTCGGACCTCCCACAAATTTCCAGGAATAAGTGATCTCCGACTCTaGCAACTCGAAAGCCACGATACAAGAAAACAAAGCCTGGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: VRTSHKFPGISDLRL*QLESHDTRKQSLVP Trigger: GGGGACCAGGCTTTGTTTTCTTGTATCGTGGCTTTCGAGTTGCCAGAGTCGGAGATCACTTATTCCTGGAAATTTGTGGGAGGTCCGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000226899.2 |
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| CDS CCA 90 bp | TCGGACACCTCCCACAAATTTCCAGGAATAAGTGATCTCCGACTCTaGCAACTCGAAAGCCACGATACAAGAAAACAAAGCCTGGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: SDTSHKFPGISDLRL*QLESHDTRKQSLVP Trigger: GGGGACCAGGCTTTGTTTTCTTGTATCGTGGCTTTCGAGTTGCCAGAGTCGGAGATCACTTATTCCTGGAAATTTGTGGGAGGTGTCCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172097.9 |
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| CDS TCA 90 bp | CGTAACGTCCTTAGTTCGGACCTCCCACAAATTTCCAGGAATAAGTaGTCTCCGACTCTGGCAACTCGAAAGCCACGATACAAGAAAACA | + |
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Preference number: 5 (lower is better) Translates to: RNVLSSDLPQISRNK*SPTLATRKPRYKKT Trigger: TGTTTTCTTGTATCGTGGCTTTCGAGTTGCCAGAGTCGGAGATCACTTATTCCTGGAAATTTGTGGGAGGTCCGAACTAAGGACGTTACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154301.2 |
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| CDS CCA 72 bp | GGCAGATCGCAGAGTTTAGAAAAGCAGCCCGAGCAGTaGAAAAGCCTAGCCACCTCCTGGAGACCACAAGGA | + |
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Preference number: 6 (lower is better) Translates to: GRSQSLEKQPEQ*KSLATSWRPQG Trigger: TCCTTGTGGTCTCCAGGAGGTGGCTAGGCTTTTCCACTGCTCGGGCTGCTTTTCTAAACTCTGCGATCTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000139969.8 ENSMUST00000150302.2 ENSMUST00000172097.9 ENSMUST00000226899.2 |
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| CDS TCA 72 bp | AACAAAGCCTGGTCCCCTCGGTTCACCAGCATGTCCTaGACTGGACAATCGAGAGGCAGATCGCAGAGTTTA | + |
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Preference number: 6 (lower is better) Translates to: NKAWSPRFTSMS*TGQSRGRSQSL Trigger: TAAACTCTGCGATCTGCCTCTCGATTGTCCAGTTCAGGACATGCTGGTGAACCGAGGGGACCAGGCTTTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000139969.8 ENSMUST00000150302.2 ENSMUST00000172097.9 ENSMUST00000226899.2 |
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| CDS CCA 72 bp | AGCCTGGTCCCCTCGGTTCACCAGCATGTCCTGAACTaGACAATCGAGAGGCAGATCGCAGAGTTTAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: SLVPSVHQHVLN*TIERQIAEFRK Trigger: TTTTCTAAACTCTGCGATCTGCCTCTCGATTGTCCAGTTCAGGACATGCTGGTGAACCGAGGGGACCAGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000139969.8 ENSMUST00000150302.2 ENSMUST00000172097.9 ENSMUST00000226899.2 |
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| CDS TCA 72 bp | AGCCAAAAGGGCTCCCGTCGTCTAGCAGCCTTCTCCTaGAGAGAAACTGTCATCTGTGTAAATTCATCATGC | + |
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Preference number: 6 (lower is better) Translates to: SQKGSRRLAAFS*RETVICVNSSC Trigger: GCATGATGAATTTACACAGATGACAGTTTCTCTTCAGGAGAAGGCTGCTAGACGACGGGAGCCCTTTTGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000139969.8 ENSMUST00000172097.9 |
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| CDS TCA 72 bp | CTTAGTTCGGACCTCCCACAAATTTCCAGGAATAAGTaGTCTCCGACTCTGGCAACTCGAAAGCCACGATAC | + |
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Preference number: 6 (lower is better) Translates to: LSSDLPQISRNK*SPTLATRKPRY Trigger: GTATCGTGGCTTTCGAGTTGCCAGAGTCGGAGATCACTTATTCCTGGAAATTTGTGGGAGGTCCGAACTAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154301.2 |
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| CDS CAA 72 bp | TGTTCAATGGTCCTCTTCAATTTTGCAGCAGCATCTTaGAAGGCAAGCCAAAAGGGCTCCCGTCGTCTAGCA | + |
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Preference number: 6 (lower is better) Translates to: CSMVLFNFAAAS*KASQKGSRRLA Trigger: TGCTAGACGACGGGAGCCCTTTTGGCTTGCCTTCAAAGATGCTGCTGCAAAATTGAAGAGGACCATTGAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000139969.8 ENSMUST00000150302.2 ENSMUST00000172097.9 |
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| CDS TCA 72 bp | TTTGCAGCAGCATCCCGTCGTCTAGCAGCCTTCTCCTaGAGAGAAACTGTCATCTGTGTAAATTCATCATGC | + |
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Preference number: 6 (lower is better) Translates to: FAAASRRLAAFS*RETVICVNSSC Trigger: GCATGATGAATTTACACAGATGACAGTTTCTCTTCAGGAGAAGGCTGCTAGACGACGGGATGCTGCTGCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226899.2 |
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| CDS CCA 72 bp | TCCCACAAATTTCCAGGAATAAGTGATCTCCGACTCTaGCAACTCGAAAGCCACGATACAAGAAAACAAAGC | + |
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Preference number: 6 (lower is better) Translates to: SHKFPGISDLRL*QLESHDTRKQS Trigger: GCTTTGTTTTCTTGTATCGTGGCTTTCGAGTTGCCAGAGTCGGAGATCACTTATTCCTGGAAATTTGTGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000139969.8 ENSMUST00000154301.2 ENSMUST00000172097.9 ENSMUST00000226899.2 |
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