Pregenerated sensors for SPACA5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037167Ensembl transcript IDs: ENSMUST00000040437.6
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCTCATAGTGTGCCACACACAGCCAGTCTCCAACAGTATAGCCTTTaGAGCCATCGAGGCCAGCCTCCTCCAGCTTCTTTGCCAGCTCAC | + |
|
Preference number: 5 (lower is better) Translates to: SHSVPHTASLQQYSL*SHRGQPPPASLPAH Trigger: GTGAGCTGGCAAAGAAGCTGGAGGAGGCTGGCCTCGATGGCTTCAAAGGCTATACTGTTGGAGACTGGCTGTGTGTGGCACACTATGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040437.6 |
||
| CDS TCA 90 bp | GTTTTCAGACGCACAGAACACCCCTTTAGCCATTCTGATAAATCATaGCCGGCACAGTGCTGGGTCCAGGAATCCCAGGCCTTCATACTC | + |
|
Preference number: 5 (lower is better) Translates to: VFRRTEHPFSHSDKS*PAQCWVQESQAFIL Trigger: GAGTATGAAGGCCTGGGATTCCTGGACCCAGCACTGTGCCGGTCATGATTTATCAGAATGGCTAAAGGGGTGTTCTGTGCGTCTGAAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040437.6 |
||
| CDS TCA 72 bp | GTGCCACACACAGCCAGTCTCCAACAGTATAGCCTTTaGAGCCATCGAGGCCAGCCTCCTCCAGCTTCTTTG | + |
|
Preference number: 6 (lower is better) Translates to: VPHTASLQQYSL*SHRGQPPPASL Trigger: CAAAGAAGCTGGAGGAGGCTGGCCTCGATGGCTTCAAAGGCTATACTGTTGGAGACTGGCTGTGTGTGGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040437.6 |
||
| CDS TCA 72 bp | CGCACAGAACACCCCTTTAGCCATTCTGATAAATCATaGCCGGCACAGTGCTGGGTCCAGGAATCCCAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: RTEHPFSHSDKS*PAQCWVQESQA Trigger: GGCCTGGGATTCCTGGACCCAGCACTGTGCCGGTCATGATTTATCAGAATGGCTAAAGGGGTGTTCTGTGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040437.6 |
||
| CDS TCA 72 bp | CTGGGTCCAGGAATCCCAGGCCTTCATACTCTTATGTaGGGATGCAACCCTCTTGGCACATATGATATCATC | + |
|
Preference number: 6 (lower is better) Translates to: LGPGIPGLHTLM*GCNPLGTYDII Trigger: GATGATATCATATGTGCCAAGAGGGTTGCATCCTCACATAAGAGTATGAAGGCCTGGGATTCCTGGACCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040437.6 |
||