Pregenerated sensors for SPACA4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070563

Ensembl transcript IDs: ENSMUST00000094424.7

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	CATTTAATGGGGGAAAGGGATGAAGGCGGAAGCCCGGGGCACAGCCCTAGGCCCATGGGCCCCACACCCTaGGCTACTCCGTGGCCTGTG	+
Preference number: 4 (lower is better) Translates to: HLMGERDEGGSPGHSPRPMGPTP*ATPWPV Trigger: CACAGGCCACGGAGTAGCCCAGGGTGTGGGGCCCAT...GGGCCTAGGGCTGTGCCCCGGGCTTCCGCCTTCATCCCTTTCCCCCATTAAATG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS-3UTR GCA 90 bp	CATTTAATGGGGGAAAGGGATGAAGGCGGAAGCCCGGGGCACAGCCCTAGGCCCAGGCCCAGGAGCAGCTaGAGACCCAGTGACAGGCTG	+
Preference number: 4 (lower is better) Translates to: HLMGERDEGGSPGHSPRPRPRSS*RPSDRL Trigger: CAGCCTGTCACTGGGTCTGCAGCTGCTCCTGGGCCT...GGGCCTAGGGCTGTGCCCCGGGCTTCCGCCTTCATCCCTTTCCCCCATTAAATG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS-3UTR CCA 90 bp	ACCTCTGGCCATTTAATGGGGGAAAGGGATGAAGGCGGAAGCCCGGGGCACAGCCCTCGCGGCCACAGCTaGTGGAGTGCACGCAGCCTT	+
Preference number: 4 (lower is better) Translates to: TSGHLMGERDEGGSPGHSPRGHS*WSARSL Trigger: AAGGCTGCGTGCACTCCACCAGCTGTGGCCGCGAGG...GCTGTGCCCCGGGCTTCCGCCTTCATCCCTTTCCCCCATTAAATGGCCAGAGGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS-3UTR CCA 90 bp	TTAATGGGGGAAAGGGATGAAGGCGGAAGCCCGGGGCACAGCCCTAGGCCCTGCCCCTGGGCTACTCCGTaGCCTGTGAAGCAATCTTCG	+
Preference number: 4 (lower is better) Translates to: LMGERDEGGSPGHSPRPCPWATP*PVKQSS Trigger: CGAAGATTGCTTCACAGGCCACGGAGTAGCCCAGGG...GCAGGGCCTAGGGCTGTGCCCCGGGCTTCCGCCTTCATCCCTTTCCCCCATTAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS-3UTR TCA 90 bp	GGCCATTTAATGGGGGAAAGGGATGAAGGCGGAAGCCCGGGGCACAGCCCTAGGCTACTCCGTGGCCTGTaGAGCAATCTTCGTCATCCC	+
Preference number: 4 (lower is better) Translates to: GHLMGERDEGGSPGHSPRLLRGL*SNLRHP Trigger: GGGATGACGAAGATTGCTTCACAGGCCACGGAGTAG...CCTAGGGCTGTGCCCCGGGCTTCCGCCTTCATCCCTTTCCCCCATTAAATGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS-3UTR CCA 90 bp	CATTTAATGGGGGAAAGGGATGAAGGCGGAAGCCCGGGGCACAGCCCTAGGCCCGATGCCTGTCACACCTaGGCAAAGAACCAACACCAG	+
Preference number: 4 (lower is better) Translates to: HLMGERDEGGSPGHSPRPDACHT*AKNQHQ Trigger: CTGGTGTTGGTTCTTTGCCCAGGTGTGACAGGCATC...GGGCCTAGGGCTGTGCCCCGGGCTTCCGCCTTCATCCCTTTCCCCCATTAAATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS-3UTR CAA 90 bp	TTAATGGGGGAAAGGGATGAAGGCGGAAGCCCGGGGCACAGCCCTAGGCCCTGCAGGCCAGTGCCCTTATaGCAAAGGTGGCCAGAACAG	+
Preference number: 5 (lower is better) Translates to: LMGERDEGGSPGHSPRPCRPVPL*QRWPEQ Trigger: CTGTTCTGGCCACCTTTGCAATAAGGGCACTGGCCT...GCAGGGCCTAGGGCTGTGCCCCGGGCTTCCGCCTTCATCCCTTTCCCCCATTAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS-3UTR CAA 90 bp	ACCTCTGGCCATTTAATGGGGGAAAGGGATGAAGGCGGAAGCCCGGGGCACAGCCAGAAGACGCAGTCCTaGATGCCTGTCACACCTGGG	+
Preference number: 5 (lower is better) Translates to: TSGHLMGERDEGGSPGHSQKTQS*MPVTPG Trigger: CCCAGGTGTGACAGGCATCAAGGACTGCGTCTTCTG...GCTGTGCCCCGGGCTTCCGCCTTCATCCCTTTCCCCCATTAAATGGCCAGAGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS-3UTR CAA 90 bp	ACCTCTGGCCATTTAATGGGGGAAAGGGATGAAGGCGGAAGCCCGGGGCACAGCGAGTGCACGCAGCCTTaGTTGATGATGGGCCCCACA	+
Preference number: 5 (lower is better) Translates to: TSGHLMGERDEGGSPGHSECTQP*LMMGPT Trigger: TGTGGGGCCCATCATCAACAAAGGCTGCGTGCACTC...GCTGTGCCCCGGGCTTCCGCCTTCATCCCTTTCCCCCATTAAATGGCCAGAGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS CCA 90 bp	GTCAGTCAGCTCACAGAAGACGCAGTCCTTGATGCCTGTCACACCTaGGCAAAGAACCAACACCAGAAGCAGTGGCCAGCCAAGGACCAT	+
Preference number: 5 (lower is better) Translates to: VSQLTEDAVLDACHT*AKNQHQKQWPAKDH Trigger: ATGGTCCTTGGCTGGCCACTGCTTCTGGTGTTGGTTCTTTGCCCAGGTGTGACAGGCATCAAGGACTGCGTCTTCTGTGAGCTGACTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS CAA 72 bp	AGGCTGGTAGCCCCTGTGGAAAGGCCAGTGCCCTTATaGCAAAGGTGGCCAGAACAGCAGGTGGTGGTGAGA	+
Preference number: 6 (lower is better) Translates to: RLVAPVERPVPL*QRWPEQQVVVR Trigger: TCTCACCACCACCTGCTGTTCTGGCCACCTTTGCAATAAGGGCACTGGCCTTTCCACAGGGGCTACCAGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS CCA 72 bp	CTCACAGAAGACGCAGTCCTTGATGCCTGTCACACCTaGGCAAAGAACCAACACCAGAAGCAGTGGCCAGCC	+
Preference number: 6 (lower is better) Translates to: LTEDAVLDACHT*AKNQHQKQWPA Trigger: GGCTGGCCACTGCTTCTGGTGTTGGTTCTTTGCCCAGGTGTGACAGGCATCAAGGACTGCGTCTTCTGTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094424.7
CDS CCA 72 bp	GCCCCTGTGGAAAGGCCAGTGCCCTTATTGCAAAGGTaGCCAGAACAGCAGGTGGTGGTGAGACTGTATGTG	+
Preference number: 6 (lower is better) Translates to: APVERPVPLLQR*PEQQVVVRLYV Trigger: CACATACAGTCTCACCACCACCTGCTGTTCTGGCCACCTTTGCAATAAGGGCACTGGCCTTTCCACAGGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094424.7