Pregenerated sensors for SPACA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053184Ensembl transcript IDs: ENSMUST00000103222.4, ENSMUST00000103223.8
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCTGTCAAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTaGGTCAGGAACAAGTCCACACTTCCCAGCCAGCTGTATGCGGCT | + |
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Preference number: 1 (lower is better) Translates to: FCQIRLLLLGLSSQA*VRNKSTLPSQLYAA Trigger: AGCCGCATACAGCTGGCTGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTTGACAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103222.4 |
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| CDS-3UTR CCA 90 bp | CTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCAGCCAGTCCCTGCCCTGGCAGTaGTGCCTCCAGGCTTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: LGLSSQAWVRNKSTLPSQSLPWQ*CLQASQ Trigger: TTGGGAAGCCTGGAGGCACCACTGCCAGGGCAGGGA...CTGGCTGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | ACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCAGCCACATCCACCCAGTCACTaGGGTCCCTGCCCTGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: TWLVFPSLGQEQVHTSQPHPPSH*GPCPGS Trigger: ACTGCCAGGGCAGGGACCTCAGTGACTGGGTGGATG...TGGCTGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | ACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCAGCCAACCACCTCCGGCTGCTaGTCTGGAAGATGCCATTGT | + |
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Preference number: 4 (lower is better) Translates to: TWLVFPSLGQEQVHTSQPTTSGC*SGRCHC Trigger: ACAATGGCATCTTCCAGATCAGCAGCCGGAGGTGGT...TGGCTGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CCA 90 bp | TACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCAGCCCTCCGGCTGCTGATCTaGAAGATGCCATTGTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: YLACLPKPGSGTSPHFPALRLLI*KMPLLV Trigger: CACCAACAATGGCATCTTCCAGATCAGCAGCCGGAG...GGCTGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CCA 90 bp | TACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCAGCCATATCCTGCAAAGATTaGGGCCATTCGAGGCGAGGG | + |
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Preference number: 4 (lower is better) Translates to: YLACLPKPGSGTSPHFPAISCKD*GHSRRG Trigger: CCCTCGCCTCGAATGGCCCCAATCTTTGCAGGATAT...GGCTGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | GTCAAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACACCAGGGCCAGCCAAGTaGTCCCAGGCGGGCACAGCT | + |
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Preference number: 4 (lower is better) Translates to: VKLDFYYLACLPKPGSGTPGPAK*SQAGTA Trigger: AGCTGTGCCCGCCTGGGATCACTTGGCTGGCCCTGG...TGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTTGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | GACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACCCAGCTCACAGCGACTaGAGACCTTGGCCTTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: DFYYLACLPKPGSGTSPHPAHSD*RPWPCW Trigger: CCAGCAAGGCCAAGGTCTTCAGTCGCTGTGAGCTGG...GTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | GGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCAGCCAGCTGCTTCCATCAGCTTCATaGTCCACAGCATTTGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: GLSSQAWVRNKSTLPSQLLPSAS*STAFVL Trigger: CAACACAAATGCTGTGGATCATGAAGCTGATGGAAG...CAGCTGGCTGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR GCA 90 bp | TACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCAGCCTCCAGACCGAAGTCATaGATCTCTTTGGCCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: YLACLPKPGSGTSPHFPASRPKS*ISLASS Trigger: TGAGCTGGCCAAAGAGATGCATGACTTCGGTCTGGA...GGCTGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CCA 90 bp | TTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCAGCCAGCTGTATGCGGCGGAAGATGCCATTGTTaGTGCTTCCATCAGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: FPSLGQEQVHTSQPAVCGGRCHC*CFHQLH Trigger: ATGAAGCTGATGGAAGCACCAACAATGGCATCTTCC...GCCGCATACAGCTGGCTGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | AAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCAGGGCCAGCCAAGTaGTCCCAGGCGGGCACAGCT | + |
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Preference number: 4 (lower is better) Translates to: KLDFYYLACLPKPGSGTSPGPAK*SQAGTA Trigger: AGCTGTGCCCGCCTGGGATCACTTGGCTGGCCCTGG...ACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | TTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACCAGCTCACAGCGACTaGAGACCTTGGCCTTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LDFYYLACLPKPGSGTSPPAHSD*RPWPCW Trigger: CCAGCAAGGCCAAGGTCTTCAGTCGCTGTGAGCTGG...TGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CCA 90 bp | GTCAAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACATCCCTGCCCTGGCAGTaGTGCCTCCAGGCTTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: VKLDFYYLACLPKPGSGTSLPWQ*CLQASQ Trigger: TTGGGAAGCCTGGAGGCACCACTGCCAGGGCAGGGA...TGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | TTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCAACCACCTCCGGCTGCTaGTCTGGAAGATGCCATTGT | + |
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Preference number: 4 (lower is better) Translates to: LDFYYLACLPKPGSGTSPTTSGC*SGRCHC Trigger: ACAATGGCATCTTCCAGATCAGCAGCCGGAGGTGGT...TGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | GACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACAGACCCAGGGGTTCTTaGACTATCTTCATGGCACAG | + |
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Preference number: 4 (lower is better) Translates to: DFYYLACLPKPGSGTSPHRPRGS*TIFMAQ Trigger: CTGTGCCATGAAGATAGTTCAAGAACCCCTGGGTCT...GTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | TATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCACCACAGCATTTGTGTTaGAGCCACTTGTGTAGTAAG | + |
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Preference number: 4 (lower is better) Translates to: YYLACLPKPGSGTSPHFPPQHLC*SHLCSK Trigger: CTTACTACACAAGTGGCTTCAACACAAATGCTGTGG...TGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR GCA 90 bp | GACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACCAGTGCAGTATATCCTaGAAAGATTGGGGCCATTCG | + |
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Preference number: 4 (lower is better) Translates to: DFYYLACLPKPGSGTSPHQCSIS*KDWGHS Trigger: CGAATGGCCCCAATCTTTGCAGGATATACTGCACTG...GTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR GCA 90 bp | TATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCAAGATGCCATTGTTGGTaGTTCCATCAGCTTCATGAT | + |
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Preference number: 4 (lower is better) Translates to: YYLACLPKPGSGTSPHFPRCHCW*FHQLHD Trigger: ATCATGAAGCTGATGGAAGCACCAACAATGGCATCT...TGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CCA 90 bp | GACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACGGAAGATGCCATTGTTaGTGCTTCCATCAGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: DFYYLACLPKPGSGTSPHGRCHC*CFHQLH Trigger: ATGAAGCTGATGGAAGCACCAACAATGGCATCTTCC...GTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | CAAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGAGACCCAGGGGTTCTTaGACTATCTTCATGGCACAG | + |
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Preference number: 4 (lower is better) Translates to: QIRLLLLGLSSQAWVRNKRPRGS*TIFMAQ Trigger: CTGTGCCATGAAGATAGTTCAAGAACCCCTGGGTCT...CTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR GCA 90 bp | GTCAAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACATCCAGACCGAAGTCATaGATCTCTTTGGCCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: VKLDFYYLACLPKPGSGTSRPKS*ISLASS Trigger: TGAGCTGGCCAAAGAGATGCATGACTTCGGTCTGGA...TGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CCA 90 bp | AAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCTCCGGCTGCTGATCTaGAAGATGCCATTGTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: KLDFYYLACLPKPGSGTSLRLLI*KMPLLV Trigger: CACCAACAATGGCATCTTCCAGATCAGCAGCCGGAG...ACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR TCA 90 bp | CAAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGCTTCCATCAGCTTCATaGTCCACAGCATTTGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: QIRLLLLGLSSQAWVRNKLPSAS*STAFVL Trigger: CAACACAAATGCTGTGGATCATGAAGCTGATGGAAG...CTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR GCA 90 bp | ATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCAGATGCCATTGTTGGTaGTTCCATCAGCTTCATGAT | + |
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Preference number: 4 (lower is better) Translates to: IRLLLLGLSSQAWVRNKSRCHCW*FHQLHD Trigger: ATCATGAAGCTGATGGAAGCACCAACAATGGCATCT...GGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR GCA 90 bp | GACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTGTTCAACAAATCAGTaGAGTATATCCTGCAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: DFYYLACLPKPGSGTSPHCSTNQ*SISCKD Trigger: ATCTTTGCAGGATATACTGCACTGATTTGTTGAACA...GTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR GCA 90 bp | CAAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTGTTCAACAAATCAGTaGAGTATATCCTGCAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: QIRLLLLGLSSQAWVRNKCSTNQ*SISCKD Trigger: ATCTTTGCAGGATATACTGCACTGATTTGTTGAACA...CTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CAA 90 bp | TACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCAGCCCAGCGACTGAAGACCTaGGCCTTGCTGGAGGCAAGC | + |
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Preference number: 5 (lower is better) Translates to: YLACLPKPGSGTSPHFPAQRLKT*ALLEAS Trigger: GCTTGCCTCCAGCAAGGCCAAGGTCTTCAGTCGCTG...GGCTGGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CAA 90 bp | TTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCCCCTGAAGACCTTGGCCTaGCTGGAGGCAAGCAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: LLLGLSSQAWVRNKSTLPLKTLA*LEASRQ Trigger: CTGCCTGCTTGCCTCCAGCAAGGCCAAGGTCTTCAG...GGGAAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CAA 90 bp | TGTCAAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACCAGCGACTGAAGACCTaGGCCTTGCTGGAGGCAAGC | + |
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Preference number: 5 (lower is better) Translates to: CQIRLLLLGLSSQAWVRNQRLKT*ALLEAS Trigger: GCTTGCCTCCAGCAAGGCCAAGGTCTTCAGTCGCTG...GTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTTGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103222.4 |
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| CDS TCA 90 bp | CATTGTTGGTGCTTCCATCAGCTTCATGATCCACAGCATTTGTGTTaGAGCCACTTGTGTAGTAAGCAAGGCAGACCCAGTCAGCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: HCWCFHQLHDPQHLC*SHLCSKQGRPSQPG Trigger: ACCTGGCTGACTGGGTCTGCCTTGCTTACTACACAAGTGGCTTCAACACAAATGCTGTGGATCATGAAGCTGATGGAAGCACCAACAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CAA 90 bp | AAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCTGAAGACCTTGGCCTaGCTGGAGGCAAGCAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: KLDFYYLACLPKPGSGTSLKTLA*LEASRQ Trigger: CTGCCTGCTTGCCTCCAGCAAGGCCAAGGTCTTCAG...ACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CAA 90 bp | GACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACCAGACCCAGGGGTTCTaGAACTATCTTCATGGCACA | + |
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Preference number: 5 (lower is better) Translates to: DFYYLACLPKPGSGTSPHQTQGF*NYLHGT Trigger: TGTGCCATGAAGATAGTTCAAGAACCCCTGGGTCTG...GTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CAA 90 bp | CTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACAAGTCCACACTTCAGACCCAGGGGTTCTaGAACTATCTTCATGGCACA | + |
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Preference number: 5 (lower is better) Translates to: LLLLGLSSQAWVRNKSTLQTQGF*NYLHGT Trigger: TGTGCCATGAAGATAGTTCAAGAACCCCTGGGTCTG...AAGTGTGGACTTGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS-3UTR CAA 90 bp | GTCAAATTAGACTTTTATTACTTGGCTTGTCTTCCCAAGCCTGGGTCAGGAACATGGAAGATGCCATTGTaGGTGCTTCCATCAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: VKLDFYYLACLPKPGSGTWKMPL*VLPSAS Trigger: TGAAGCTGATGGAAGCACCAACAATGGCATCTTCCA...TGTTCCTGACCCAGGCTTGGGAAGACAAGCCAAGTAATAAAAGTCTAATTTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS TCA 72 bp | CGAAGTCATGCATCTCTTTGGCCAGCTCACAGCGACTaGAGACCTTGGCCTTGCTGGAGGCAAGCAGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RSHASLWPAHSD*RPWPCWRQAGS Trigger: GCTGCCTGCTTGCCTCCAGCAAGGCCAAGGTCTTCAGTCGCTGTGAGCTGGCCAAAGAGATGCATGACTTCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS CAA 90 bp | TTGAGATCATTGTTCAACAAATCAGTGCAGTATATCCTGCAAAGATaGGGGCCATTCGAGGCGAGGGTTCTGCACCACCTCCGGCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: LRSLFNKSVQYILQR*GPFEARVLHHLRLL Trigger: CAGCAGCCGGAGGTGGTGCAGAACCCTCGCCTCGAATGGCCCCAATCTTTGCAGGATATACTGCACTGATTTGTTGAACAATGATCTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS CCA 72 bp | TGTTCAACAAATCAGTGCAGTATATCCTGCAAAGATTaGGGCCATTCGAGGCGAGGGTTCTGCACCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: CSTNQCSISCKD*GHSRRGFCTTS Trigger: GGAGGTGGTGCAGAACCCTCGCCTCGAATGGCCCCAATCTTTGCAGGATATACTGCACTGATTTGTTGAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS CAA 90 bp | GCAGTGGTGCCTCCAGGCTTCCCAATAGCCCAGACCCAGGGGTTCTaGAACTATCTTCATGGCACAGACGATAGAATCTTTGAGATCATT | + |
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Preference number: 6 (lower is better) Translates to: AVVPPGFPIAQTQGF*NYLHGTDDRIFEII Trigger: AATGATCTCAAAGATTCTATCGTCTGTGCCATGAAGATAGTTCAAGAACCCCTGGGTCTGGGCTATTGGGAAGCCTGGAGGCACCACTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS CAA 72 bp | TTGTTCAACAAATCAGTGCAGTATATCCTGCAAAGATaGGGGCCATTCGAGGCGAGGGTTCTGCACCACCTC | + |
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Preference number: 6 (lower is better) Translates to: LFNKSVQYILQR*GPFEARVLHHL Trigger: GAGGTGGTGCAGAACCCTCGCCTCGAATGGCCCCAATCTTTGCAGGATATACTGCACTGATTTGTTGAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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| CDS TCA 72 bp | TGCTTCCATCAGCTTCATGATCCACAGCATTTGTGTTaGAGCCACTTGTGTAGTAAGCAAGGCAGACCCAGT | + |
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Preference number: 6 (lower is better) Translates to: CFHQLHDPQHLC*SHLCSKQGRPS Trigger: ACTGGGTCTGCCTTGCTTACTACACAAGTGGCTTCAACACAAATGCTGTGGATCATGAAGCTGATGGAAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103222.4 ENSMUST00000103223.8 |
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