Pregenerated sensors for SP8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048562Ensembl transcript IDs: ENSMUST00000063918.4, ENSMUST00000223305.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCGCCAGCCCAGTGCTGGAGGAGCGGGTTTCCACTGCGCCCCGCATaGCTGTCACTGTGCAGAAGGGAGCCAAGGATTCAGCCACCGATG | + |
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Preference number: 1 (lower is better) Translates to: PPAQCWRSGFPLRPA*LSLCRREPRIQPPM Trigger: CATCGGTGGCTGAATCCTTGGCTCCCTTCTGCACAGTGACAGCCATGCGGGGCGCAGTGGAAACCCGCTCCTCCAGCACTGGGCTGGCGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR GCA 90 bp | CCTAACCCCAGAGGCCACAGCCTCTTCAAAGTTCCGCCAGCCCAGTaGTGGAGGAGCGGGTTTCCACTGCGCCCCGCATGGCTGTCACTG | + |
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Preference number: 1 (lower is better) Translates to: PNPRGHSLFKVPPAQ*WRSGFPLRPAWLSL Trigger: CAGTGACAGCCATGCGGGGCGCAGTGGAAACCCGCTCCTCCAGCACTGGGCTGGCGGAACTTTGAAGAGGCTGTGGCCTCTGGGGTTAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR TCA 90 bp | CAGGACTCCTACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTTaGACACTGTTCTTTCCAAGGCCACAAAAGCCACTGTTCTACCAG | + |
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Preference number: 1 (lower is better) Translates to: QDSYIPLPTAAAQAG*TLFFPRPQKPLFYQ Trigger: CTGGTAGAACAGTGGCTTTTGTGGCCTTGGAAAGAACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAGGAGTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR TCA 90 bp | AGTCTTGGCCTTTCAAACACTAAACTCGATCAAAGGCCAACAACCTaGCTCCTTCTGAAGACTGAGAAGGAAGCAGCAACATGGAATTTC | + |
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Preference number: 1 (lower is better) Translates to: SLGLSNTKLDQRPTT*LLLKTEKEAATWNF Trigger: GAAATTCCATGTTGCTGCTTCCTTCTCAGTCTTCAGAAGGAGTCAGGTTGTTGGCCTTTGATCGAGTTTAGTGTTTGAAAGGCCAAGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR TCA 90 bp | TTTCAAACACTAAACTCGATCAAAGGCCAACAACCTGACTCCTTCTaGAGACTGAGAAGGAAGCAGCAACATGGAATTTCTTTGAATTGT | + |
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Preference number: 1 (lower is better) Translates to: FQTLNSIKGQQPDSF*RLRRKQQHGISLNC Trigger: ACAATTCAAAGAAATTCCATGTTGCTGCTTCCTTCTCAGTCTTCAGAAGGAGTCAGGTTGTTGGCCTTTGATCGAGTTTAGTGTTTGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR TCA 90 bp | AGACTGAGAAGGAAGCAGCAACATGGAATTTCTTTGAATTGTTTGTaGATTACTACAAGTTTTAAGAGGTCAATAAATCCTGGTGCTGAG | + |
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Preference number: 1 (lower is better) Translates to: RLRRKQQHGISLNCL*ITTSFKRSINPGAE Trigger: CTCAGCACCAGGATTTATTGACCTCTTAAAACTTGTAGTAATTCACAAACAATTCAAAGAAATTCCATGTTGCTGCTTCCTTCTCAGTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR GCA 90 bp | GGTTGCAGCAGTCCTCCCACGAGTGTAATGCTCAGCACAGGACAGTCCAAGGGGGTTCCGCCAGCCCAGTaGTGGAGGAGCGGGTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: GCSSPPTSVMLSTGQSKGVPPAQ*WRSGFP Trigger: TGGAAACCCGCTCCTCCAGCACTGGGCTGGCGGAAC...CCCCTTGGACTGTCCTGTGCTGAGCATTACACTCGTGGGAGGACTGCTGCAACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR CCA 90 bp | GGACTCCTACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTTGAACACTGTTCCGCCAGCCCAGTGCTaGAGGAGCGGGTTTCCACTG | + |
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Preference number: 2 (lower is better) Translates to: GLLHPSPYSCGSSGLNTVPPAQC*RSGFPL Trigger: CAGTGGAAACCCGCTCCTCCAGCACTGGGCTGGCGG...AACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAGGAGTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR CCA 90 bp | GGACTCCTACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTTGAACACTGTTCCACTGCGCCCCGCATaGCTGTCACTGTGCAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: GLLHPSPYSCGSSGLNTVPLRPA*LSLCRR Trigger: CCTTCTGCACAGTGACAGCCATGCGGGGCGCAGTGG...AACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAGGAGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR CAA 90 bp | GCAGGACTCCTACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTaGAACACTGTTCTTTCCAAGGCCACAAAAGCCACTGTTCTACCA | + |
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Preference number: 2 (lower is better) Translates to: AGLLHPSPYSCGSSG*NTVLSKATKATVLP Trigger: TGGTAGAACAGTGGCTTTTGTGGCCTTGGAAAGAACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAGGAGTCCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR GCA 90 bp | GAAACGTGCTCGCAAGCAGAGGAAAACTATCTAAACGAGAAGCTAAGAGGAAGAGGAGCGGGTTTCCACTaGGCCCCGCATGGCTGTCAC | + |
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Preference number: 2 (lower is better) Translates to: ETCSQAEENYLNEKLRGRGAGFH*APHGCH Trigger: GTGACAGCCATGCGGGGCGCAGTGGAAACCCGCTCC...TCTTCCTCTTAGCTTCTCGTTTAGATAGTTTTCCTCTGCTTGCGAGCACGTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR GCA 90 bp | GAAACGTGCTCGCAAGCAGAGGAAAACTATCTAAACGAGAAGCTAAGAGGAAGAGCATGGCTGTCACTGTaGAGAAGGGAGCCAAGGATT | + |
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Preference number: 2 (lower is better) Translates to: ETCSQAEENYLNEKLRGRAWLSL*RREPRI Trigger: AATCCTTGGCTCCCTTCTGCACAGTGACAGCCATGC...TCTTCCTCTTAGCTTCTCGTTTAGATAGTTTTCCTCTGCTTGCGAGCACGTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR GCA 90 bp | ATTATGAAGTATAGGAGAACTCTCACTTTAACTATACCTGAACTGCCAGCAAATTCAGCCACCGATGTGTaGTACTTACTGTCCACATCC | + |
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Preference number: 2 (lower is better) Translates to: IMKYRRTLTLTIPELPANSATDV*YLLSTS Trigger: GGATGTGGACAGTAAGTAGCACACATCGGTGGCTGA...ATTTGCTGGCAGTTCAGGTATAGTTAAAGTGAGAGTTCTCCTATACTTCATAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR GCA 90 bp | ATTATGAAGTATAGGAGAACTCTCACTTTAACTATACCTGAACTGCCAGCAAATGTTTGGAGAGAAACGTaGTCGCAAGCAGAGGAAAAC | + |
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Preference number: 2 (lower is better) Translates to: IMKYRRTLTLTIPELPANVWRET*SQAEEN Trigger: GTTTTCCTCTGCTTGCGAGCACGTTTCTCTCCAAAC...ATTTGCTGGCAGTTCAGGTATAGTTAAAGTGAGAGTTCTCCTATACTTCATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR GCA 90 bp | AAGACAAACACGAAGATACTTAATCTGGTCTCACCGGAAAGGGGGTATTTTTGCTTTGGGATCAATATTTaGAGTTTGGAGAGAAACGTG | + |
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Preference number: 2 (lower is better) Translates to: KTNTKILNLVSPERGYFCFGINI*SLERNV Trigger: CACGTTTCTCTCCAAACTGCAAATATTGATCCCAAA...GCAAAAATACCCCCTTTCCGGTGAGACCAGATTAAGTATCTTCGTGTTTGTCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR CCA 90 bp | AACTGCCAGCAAATGCAAATAAGTACATGCGCCATTAAATTAAATGTCATCCAAGAGAGAATGAGAAGTTaGGGGAAAGAACGCACAGCT | + |
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Preference number: 2 (lower is better) Translates to: NCQQMQISTCAIKLNVIQERMRS*GKERTA Trigger: AGCTGTGCGTTCTTTCCCCCAACTTCTCATTCTCTC...TTGGATGACATTTAATTTAATGGCGCATGTACTTATTTGCATTTGCTGGCAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR CCA 90 bp | CCCGTTATTATGAAGTATAGGAGAACTCTCACTTTAACTATACCTGAACTGCCATCAATATTTGCAGTTTaGAGAGAAACGTGCTCGCAA | + |
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Preference number: 2 (lower is better) Translates to: PVIMKYRRTLTLTIPELPSIFAV*RETCSQ Trigger: TTGCGAGCACGTTTCTCTCCAAACTGCAAATATTGA...TGGCAGTTCAGGTATAGTTAAAGTGAGAGTTCTCCTATACTTCATAATAACGGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR TCA 90 bp | ATTATGAAGTATAGGAGAACTCTCACTTTAACTATACCTGAACTGCCAGCAAATTATGCTTGGGGATGGTaGAAAAACCGAGGTAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: IMKYRRTLTLTIPELPANYAWGW*KNRGRK Trigger: TTTTCTACCTCGGTTTTTTCACCATCCCCAAGCATA...ATTTGCTGGCAGTTCAGGTATAGTTAAAGTGAGAGTTCTCCTATACTTCATAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR CCA 72 bp | GGCCACAGCCTCTTCAAAGTTCCGCCAGCCCAGTGCTaGAGGAGCGGGTTTCCACTGCGCCCCGCATGGCTG | + |
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Preference number: 3 (lower is better) Translates to: GHSLFKVPPAQC*RSGFPLRPAWL Trigger: CAGCCATGCGGGGCGCAGTGGAAACCCGCTCCTCCAGCACTGGGCTGGCGGAACTTTGAAGAGGCTGTGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR GCA 72 bp | AGAGGCCACAGCCTCTTCAAAGTTCCGCCAGCCCAGTaGTGGAGGAGCGGGTTTCCACTGCGCCCCGCATGG | + |
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Preference number: 3 (lower is better) Translates to: RGHSLFKVPPAQ*WRSGFPLRPAW Trigger: CCATGCGGGGCGCAGTGGAAACCCGCTCCTCCAGCACTGGGCTGGCGGAACTTTGAAGAGGCTGTGGCCTCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR CCA 72 bp | CAGTGCTGGAGGAGCGGGTTTCCACTGCGCCCCGCATaGCTGTCACTGTGCAGAAGGGAGCCAAGGATTCAG | + |
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Preference number: 3 (lower is better) Translates to: QCWRSGFPLRPA*LSLCRREPRIQ Trigger: CTGAATCCTTGGCTCCCTTCTGCACAGTGACAGCCATGCGGGGCGCAGTGGAAACCCGCTCCTCCAGCACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR GCA 72 bp | AGCGGGTTTCCACTGCGCCCCGCATGGCTGTCACTGTaGAGAAGGGAGCCAAGGATTCAGCCACCGATGTGT | + |
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Preference number: 3 (lower is better) Translates to: SGFPLRPAWLSL*RREPRIQPPMC Trigger: ACACATCGGTGGCTGAATCCTTGGCTCCCTTCTGCACAGTGACAGCCATGCGGGGCGCAGTGGAAACCCGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR TCA 72 bp | TACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTTaGACACTGTTCTTTCCAAGGCCACAAAAGCCACTG | + |
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Preference number: 3 (lower is better) Translates to: YIPLPTAAAQAG*TLFFPRPQKPL Trigger: CAGTGGCTTTTGTGGCCTTGGAAAGAACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR CAA 90 bp | AAGACAAACACGAAGATACTTAATCTGGTCTCACCGGAAAGGGGGTATTTTTGCCCAGGAGGGGATTCCTaGGCAGGACTCCTACATCCC | + |
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Preference number: 3 (lower is better) Translates to: KTNTKILNLVSPERGYFCPGGDS*AGLLHP Trigger: GGGATGTAGGAGTCCTGCCAAGGAATCCCCTCCTGG...GCAAAAATACCCCCTTTCCGGTGAGACCAGATTAAGTATCTTCGTGTTTGTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR CAA 90 bp | AAGACAAACACGAAGATACTTAATCTGGTCTCACCGGAAAGGGGGTATTTTTGCTGCGGCTCAAGCGGGTaGAACACTGTTCTTTCCAAG | + |
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Preference number: 3 (lower is better) Translates to: KTNTKILNLVSPERGYFCCGSSG*NTVLSK Trigger: CTTGGAAAGAACAGTGTTCAACCCGCTTGAGCCGCA...GCAAAAATACCCCCTTTCCGGTGAGACCAGATTAAGTATCTTCGTGTTTGTCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR TCA 72 bp | ATAAAAAGTTACAAAGAAGAAAGGAGGGGGAGGCATTaGTTCCCGTTCGCAGAACTCTCATCGGTTCACCCG | + |
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Preference number: 3 (lower is better) Translates to: IKSYKEERRGRH*FPFAELSSVHP Trigger: CGGGTGAACCGATGAGAGTTCTGCGAACGGGAATCAATGCCTCCCCCTCCTTTCTTCTTTGTAACTTTTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR GCA 72 bp | CTAAATTCATATTCGAGCAAAACTAGGCCCGGAAAGTaGGTGTGTGGCTCTGCACCTCCAGAATTGAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: LNSYSSKTRPGK*VCGSAPPELSS Trigger: TGAACTCAATTCTGGAGGTGCAGAGCCACACACGCACTTTCCGGGCCTAGTTTTGCTCGAATATGAATTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR TCA 72 bp | CTTTCAAACACTAAACTCGATCAAAGGCCAACAACCTaGCTCCTTCTGAAGACTGAGAAGGAAGCAGCAACA | + |
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Preference number: 3 (lower is better) Translates to: LSNTKLDQRPTT*LLLKTEKEAAT Trigger: TGTTGCTGCTTCCTTCTCAGTCTTCAGAAGGAGTCAGGTTGTTGGCCTTTGATCGAGTTTAGTGTTTGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR GCA 72 bp | AATTACGGCGACCAAAATAACTTTGGGATCAATATTTaGAGTTTGGAGAGAAACGTGCTCGCAAGCAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: NYGDQNNFGINI*SLERNVLASRG Trigger: TCCTCTGCTTGCGAGCACGTTTCTCTCCAAACTGCAAATATTGATCCCAAAGTTATTTTGGTCGCCGTAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR-3UTR CAA 90 bp | ATTATGAAGTATAGGAGAACTCTCACTTTAACTATACCTGAACTGCCAGCAAATAGAGAGAATGAGAAGTaGGGGGAAAGAACGCACAGC | + |
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Preference number: 3 (lower is better) Translates to: IMKYRRTLTLTIPELPANRENEK*GERTHS Trigger: GCTGTGCGTTCTTTCCCCCAACTTCTCATTCTCTCT...ATTTGCTGGCAGTTCAGGTATAGTTAAAGTGAGAGTTCTCCTATACTTCATAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR GCA 90 bp | GGTTGCAGCAGTCCTCCCACGAGTGTAATGCTCAGCACAGGACAGTCCAAGGGGCCCGGCTCTGGAGGCTaGAACAGCTCAGGGGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: GCSSPPTSVMLSTGQSKGPGSGG*NSSGEW Trigger: CCACTCCCCTGAGCTGTTGCAGCCTCCAGAGCCGGG...CCCCTTGGACTGTCCTGTGCTGAGCATTACACTCGTGGGAGGACTGCTGCAACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR GCA 90 bp | GGACTCCTACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTTGAACACTGTTGCAGGGCTGAGCAGGTaGGACGAGGCACCGCTACTG | + |
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Preference number: 4 (lower is better) Translates to: GLLHPSPYSCGSSGLNTVAGLSR*DEAPLL Trigger: CAGTAGCGGTGCCTCGTCGCACCTGCTCAGCCCTGC...AACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAGGAGTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CCA 90 bp | ATCGGTTCACCCGCAGGGCACAAAGACCTAGCCAGAGCTGAATGGGGAGATCTAGCGCTGCCGCCCCATTaGGGTTCTGCACGTCGATCC | + |
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Preference number: 4 (lower is better) Translates to: IGSPAGHKDLARAEWGDLALPPH*GSARRS Trigger: GGATCGACGTGCAGAACCCCAATGGGGCGGCAGCGC...TAGATCTCCCCATTCAGCTCTGGCTAGGTCTTTGTGCCCTGCGGGTGAACCGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CCA 90 bp | CACAAAGACCTAGCCAGAGCTGAATGGGGAGATCTAAACTCTGCTAACCCGGTCTCCAGGCCGTTGCGGTaGCCCGGCTCTGGAGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HKDLARAEWGDLNSANPVSRPLR*PGSGGC Trigger: GCAGCCTCCAGAGCCGGGCCACCGCAACGGCCTGGA...GACCGGGTTAGCAGAGTTTAGATCTCCCCATTCAGCTCTGGCTAGGTCTTTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR GCA 90 bp | GGACTCCTACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTTGAACACTGTTGGGATGTGGCAGCTATaGAGCCCTTTGCGACGCAGG | + |
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Preference number: 4 (lower is better) Translates to: GLLHPSPYSCGSSGLNTVGMWQL*SPLRRR Trigger: CCTGCGTCGCAAAGGGCTGCATAGCTGCCACATCCC...AACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAGGAGTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR TCA 90 bp | AAGACAAACACGAAGATACTTAATCTGGTCTCACCGGAAAGGGGGTATTTTTGCTGCCGCCGCTGCGGCTaGGGAGGAGCCGCCGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: KTNTKILNLVSPERGYFCCRRCG*GGAAVP Trigger: CGGAACGGCGGCTCCTCCTCAGCCGCAGCGGCGGCA...GCAAAAATACCCCCTTTCCGGTGAGACCAGATTAAGTATCTTCGTGTTTGTCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR GCA 90 bp | GGACTCCTACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTTGAACACTGTTCCGTCCACCGACGTGTaGACCTTGGAGATAAACACT | + |
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Preference number: 4 (lower is better) Translates to: GLLHPSPYSCGSSGLNTVPSTDV*TLEINT Trigger: AGTGTTTATCTCCAAGGTGCACACGTCGGTGGACGG...AACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAGGAGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CCA 90 bp | GGACTCCTACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTTGAACACTGTTACACAGAGTAGTCGTTaGCAAAGGGCGAGCTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: GLLHPSPYSCGSSGLNTVTQSSR*QRASWK Trigger: CTTCCAGCTCGCCCTTTGCCAACGACTACTCTGTGT...AACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAGGAGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CCA 90 bp | GAAACGTGCTCGCAAGCAGAGGAAAACTATCTAAACGAGAAGCTAAGAGGAAGACCACATCCCACCAGCTaGAGGCGCCCGCGGAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: ETCSQAEENYLNEKLRGRPHPTS*RRPRSP Trigger: TGGGCTCCGCGGGCGCCTCCAGCTGGTGGGATGTGG...TCTTCCTCTTAGCTTCTCGTTTAGATAGTTTTCCTCTGCTTGCGAGCACGTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR TCA 90 bp | ATCGGTTCACCCGCAGGGCACAAAGACCTAGCCAGAGCTGAATGGGGAGATCTAGAGATAAACACTGGCTaGTGGGAGCTATCCTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: IGSPAGHKDLARAEWGDLEINTG*WELSCE Trigger: CTCGCAGGATAGCTCCCATCAGCCAGTGTTTATCTC...TAGATCTCCCCATTCAGCTCTGGCTAGGTCTTTGTGCCCTGCGGGTGAACCGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR TCA 90 bp | GAAACGTGCTCGCAAGCAGAGGAAAACTATCTAAACGAGAAGCTAAGAGGAAGAGCTGTCCTGCAGGGCTaGGCAGGTGCGACGAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: ETCSQAEENYLNEKLRGRAVLQG*AGATRH Trigger: GTGCCTCGTCGCACCTGCTCAGCCCTGCAGGACAGC...TCTTCCTCTTAGCTTCTCGTTTAGATAGTTTTCCTCTGCTTGCGAGCACGTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| 3UTR CAA 72 bp | CTACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTaGAACACTGTTCTTTCCAAGGCCACAAAAGCCACT | + |
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Preference number: 4 (lower is better) Translates to: LHPSPYSCGSSG*NTVLSKATKAT Trigger: AGTGGCTTTTGTGGCCTTGGAAAGAACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CCA 90 bp | ATCGGTTCACCCGCAGGGCACAAAGACCTAGCCAGAGCTGAATGGGGAGATCTAGAGCGTTTCCAAGGGTaGAAGCCTTTACCGAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: IGSPAGHKDLARAEWGDLERFQG*KPLPKE Trigger: TTCCTTCGGTAAAGGCTTCCACCCTTGGAAACGCTC...TAGATCTCCCCATTCAGCTCTGGCTAGGTCTTTGTGCCCTGCGGGTGAACCGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR GCA 90 bp | CCCGTTATTATGAAGTATAGGAGAACTCTCACTTTAACTATACCTGAACTGCCATGTCGCTGCCTTTCTTaGCGCCGCCGGAGCCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: PVIMKYRRTLTLTIPELPCRCLS*RRRSPP Trigger: CGGCGGGCTCCGGCGGCGGCAAGAAAGGCAGCGACA...TGGCAGTTCAGGTATAGTTAAAGTGAGAGTTCTCCTATACTTCATAATAACGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR GCA 90 bp | AAGAAAAATACTATACAAAATCGTCTCACACCTCACAGCGGCGGAGTCAAGTTTGCCCCATTGGGGTTCTaGACGTCGATCCAGCCCGCG | + |
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Preference number: 4 (lower is better) Translates to: KKNTIQNRLTPHSGGVKFAPLGF*TSIQPA Trigger: CGCGGGCTGGATCGACGTGCAGAACCCCAATGGGGC...AAACTTGACTCCGCCGCTGTGAGGTGTGAGACGATTTTGTATAGTATTTTTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR TCA 90 bp | AAAGTATACTATGTTTCAAAGTATGGCTCAAGGAACACCCATTGCTTAAATGCACCGGGTGCGAAGGCTTaGACCAGGACTCATACGGGT | + |
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Preference number: 4 (lower is better) Translates to: KVYYVSKYGSRNTHCLNAPGAKA*TRTHTG Trigger: ACCCGTATGAGTCCTGGTTCAAGCCTTCGCACCCGG...TGCATTTAAGCAATGGGTGTTCCTTGAGCCATACTTTGAAACATAGTATACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR GCA 90 bp | AACTGCCAGCAAATGCAAATAAGTACATGCGCCATTAAATTAAATGTCATCCAATGGAACCCACTACGTTaGAGCTGCCGGAGGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: NCQQMQISTCAIKLNVIQWNPLR*SCRRRK Trigger: CTTCCTCCTCCGGCAGCTGCAACGTAGTGGGTTCCA...TTGGATGACATTTAATTTAATGGCGCATGTACTTATTTGCATTTGCTGGCAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR GCA 90 bp | AAAGTATACTATGTTTCAAAGTATGGCTCAAGGAACACCCATTGCTTAAATGCAAAACCGTCCATGAGGTaGTGTCCTGCAGGGCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: KVYYVSKYGSRNTHCLNAKPSMR*CPAGLS Trigger: GCTCAGCCCTGCAGGACAGCACCTCATGGACGGTTT...TGCATTTAAGCAATGGGTGTTCCTTGAGCCATACTTTGAAACATAGTATACTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CCA 90 bp | AACTGCCAGCAAATGCAAATAAGTACATGCGCCATTAAATTAAATGTCATCCAAAGGAGGGAGACGGGCTaGGGCTGCCGATCTTATTAC | + |
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Preference number: 4 (lower is better) Translates to: NCQQMQISTCAIKLNVIQRRETG*GCRSYY Trigger: GTAATAAGATCGGCAGCCCCAGCCCGTCTCCCTCCT...TTGGATGACATTTAATTTAATGGCGCATGTACTTATTTGCATTTGCTGGCAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CCA 90 bp | AACTGCCAGCAAATGCAAATAAGTACATGCGCCATTAAATTAAATGTCATCCAACTTGGAGATAAACACTaGCTGATGGGAGCTATCCTG | + |
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Preference number: 4 (lower is better) Translates to: NCQQMQISTCAIKLNVIQLGDKH*LMGAIL Trigger: CAGGATAGCTCCCATCAGCCAGTGTTTATCTCCAAG...TTGGATGACATTTAATTTAATGGCGCATGTACTTATTTGCATTTGCTGGCAGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS GCA 90 bp | AGTGCGCTCCGGAACCGCCGCCGCCTCCCCCGCCGCCGCCGCCGCTaGCCCCCGAGACGCCCGGAGCCTGGAACACAGAGTAGTCGTTGG | + |
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Preference number: 5 (lower is better) Translates to: SALRNRRRLPRRRRR*PPRRPEPGTQSSRW Trigger: CCAACGACTACTCTGTGTTCCAGGCTCCGGGCGTCTCGGGGGGCAGCGGCGGCGGCGGCGGGGGAGGCGGCGGCGGTTCCGGAGCGCACT 77% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063918.4 ENSMUST00000223305.2 |
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| CDS CCA 90 bp | TGGGGTTCTGCACGTCGATCCAGCCCGCGCCCACATCCCACCAGCTaGAGGCGCCCGCGGAGCCCACGTCGGCCGCGGCGCCAAGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: WGSARRSSPRPHPTS*RRPRSPRRPRRQGP Trigger: CGGGCCTTGGCGCCGCGGCCGACGTGGGCTCCGCGGGCGCCTCCAGCTGGTGGGATGTGGGCGCGGGCTGGATCGACGTGCAGAACCCCA 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS GCA 90 bp | GCCGGGTGCAGCGAGCCGGGCAGCGCTGCCGCCCCATTGGGGTTCTaGACGTCGATCCAGCCCGCGCCCACATCCCACCAGCTGGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: AGCSEPGSAAAPLGF*TSIQPAPTSHQLEA Trigger: CGCCTCCAGCTGGTGGGATGTGGGCGCGGGCTGGATCGACGTGCAGAACCCCAATGGGGCGGCAGCGCTGCCCGGCTCGCTGCACCCGGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS GCA 90 bp | TGCAACAGCTCAGGGGAGTGGCAAGGAGGGCTTCCCGCCGCGCTGTaGTCGCTGTCGGTGTCGCTGCCTTTCTTGCCGCCGCCGGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: CNSSGEWQGGLPAAL*SLSVSLPFLPPPEP Trigger: GGGCTCCGGCGGCGGCAAGAAAGGCAGCGACACCGACAGCGAGCACAGCGCGGCGGGAAGCCCTCCTTGCCACTCCCCTGAGCTGTTGCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS TCA 90 bp | GGAGTGGCTCAGGCCGGAATAATCCGAGTTGTAGCCTCCCAGCGGTaGATGCAGCGACGTCTGAAGGCCCCCGGCCGCCGGGTGCAGCGA | + |
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Preference number: 5 (lower is better) Translates to: GVAQAGIIRVVASQR*MQRRLKAPGRRVQR Trigger: TCGCTGCACCCGGCGGCCGGGGGCCTTCAGACGTCGCTGCATTCACCGCTGGGAGGCTACAACTCGGATTATTCCGGCCTGAGCCACTCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS GCA 90 bp | GGCTTGAAACCGTCCATGAGGTGCTGTCCTGCAGGGCTGAGCAGGTaGGACGAGGCACCGCTACTGAATGCGGAGTGGCTCAGGCCGGAA | + |
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Preference number: 5 (lower is better) Translates to: GLKPSMRCCPAGLSR*DEAPLLNAEWLRPE Trigger: TTCCGGCCTGAGCCACTCCGCATTCAGTAGCGGTGCCTCGTCGCACCTGCTCAGCCCTGCAGGACAGCACCTCATGGACGGTTTCAAGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS CCA 90 bp | ACCCTGCAGTCCGTCCACCGACGTGTGCACCTTGGAGATAAACACTaGCTGATGGGAGCTATCCTGCGAGTGCGCTCCGGAACCGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: TLQSVHRRVHLGDKH*LMGAILRVRSGTAA Trigger: GGCGGCGGTTCCGGAGCGCACTCGCAGGATAGCTCCCATCAGCCAGTGTTTATCTCCAAGGTGCACACGTCGGTGGACGGACTGCAGGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063918.4 ENSMUST00000223305.2 |
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| CDS GCA 90 bp | CTGTCCTGCAGGGCTGAGCAGGTGCGACGAGGCACCGCTACTGAATaGGGAGTGGCTCAGGCCGGAATAATCCGAGTTGTAGCCTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: LSCRAEQVRRGTATE*GVAQAGIIRVVASQ Trigger: CTGGGAGGCTACAACTCGGATTATTCCGGCCTGAGCCACTCCGCATTCAGTAGCGGTGCCTCGTCGCACCTGCTCAGCCCTGCAGGACAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS GCA 90 bp | AGAGCCGGGCAATACCGGCTTGAAACCGTCCATGAGGTGCTGTCCTaGAGGGCTGAGCAGGTGCGACGAGGCACCGCTACTGAATGCGGA | + |
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Preference number: 5 (lower is better) Translates to: RAGQYRLETVHEVLS*RAEQVRRGTATECG Trigger: TCCGCATTCAGTAGCGGTGCCTCGTCGCACCTGCTCAGCCCTGCAGGACAGCACCTCATGGACGGTTTCAAGCCGGTATTGCCCGGCTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CAA 90 bp | CTTGGCAGGACTCCTACATCCCTCTCCCTACAGCTGCGGCTCAAGCGGGTTGAAAGCGCTGCCGCCCCATaGGGGTTCTGCACGTCGATC | + |
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Preference number: 5 (lower is better) Translates to: LGRTPTSLSLQLRLKRVESAAAP*GFCTSI Trigger: GATCGACGTGCAGAACCCCAATGGGGCGGCAGCGCT...TTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAGGAGTCCTGCCAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CAA 90 bp | GGTTGCAGCAGTCCTCCCACGAGTGTAATGCTCAGCACAGGACAGTCCAAGGGGCCGGGCAATACCGGCTaGAAACCGTCCATGAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: GCSSPPTSVMLSTGQSKGPGNTG*KPSMRC Trigger: GCACCTCATGGACGGTTTCAAGCCGGTATTGCCCGG...CCCCTTGGACTGTCCTGTGCTGAGCATTACACTCGTGGGAGGACTGCTGCAACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS CCA 90 bp | ACGTTGCAGCTGCCGGAGGAGGAAGACGAGGAGCGTTTCCAAGGGTaGAAGCCTTTACCGAAGGAAGAAGAGCTGTCCGACAGGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: TLQLPEEEDEERFQG*KPLPKEEELSDREE Trigger: CTCCTCCCTGTCGGACAGCTCTTCTTCCTTCGGTAAAGGCTTCCACCCTTGGAAACGCTCCTCGTCTTCCTCCTCCGGCAGCTGCAACGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063918.4 ENSMUST00000223305.2 |
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| CDS-3UTR CAA 90 bp | AACTGCCAGCAAATGCAAATAAGTACATGCGCCATTAAATTAAATGTCATCCAACAGCTATGCAGCCCTTaGCGACGCAGGCTCGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: NCQQMQISTCAIKLNVIQQLCSP*RRRLAP Trigger: GGGAGCGAGCCTGCGTCGCAAAGGGCTGCATAGCTG...TTGGATGACATTTAATTTAATGGCGCATGTACTTATTTGCATTTGCTGGCAGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CAA 90 bp | AACTGCCAGCAAATGCAAATAAGTACATGCGCCATTAAATTAAATGTCATCCAACCCGGGTGCGAAGGCTaGAACCAGGACTCATACGGG | + |
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Preference number: 5 (lower is better) Translates to: NCQQMQISTCAIKLNVIQPGCEG*NQDSYG Trigger: CCCGTATGAGTCCTGGTTCAAGCCTTCGCACCCGGG...TTGGATGACATTTAATTTAATGGCGCATGTACTTATTTGCATTTGCTGGCAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS-3UTR CAA 90 bp | ATTATGAAGTATAGGAGAACTCTCACTTTAACTATACCTGAACTGCCAGCAAATCTGGAACCCACTACGTaGCAGCTGCCGGAGGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: IMKYRRTLTLTIPELPANLEPTT*QLPEEE Trigger: TTCCTCCTCCGGCAGCTGCAACGTAGTGGGTTCCAG...ATTTGCTGGCAGTTCAGGTATAGTTAAAGTGAGAGTTCTCCTATACTTCATAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS GCA 72 bp | GGCTTCCCGCCGCGCTGTGCTCGCTGTCGGTGTCGCTaGCTTTCTTGCCGCCGCCGGAGCCCGCCGAGCCGC | + |
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Preference number: 6 (lower is better) Translates to: GFPPRCARCRCR*LSCRRRSPPSR Trigger: GCGGCTCGGCGGGCTCCGGCGGCGGCAAGAAAGGCAGCGACACCGACAGCGAGCACAGCGCGGCGGGAAGCC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS GCA 72 bp | CGAGCCTCCGCAGCTAAAAGAGTCGGACACCAGGGCTaGGGCCGCCGCTGCTGCCGCCGCTGCCGCCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RASAAKRVGHQG*GRRCCRRCRRC Trigger: GCAGCGGCGGCAGCGGCGGCAGCAGCGGCGGCCGCAGCCCTGGTGTCCGACTCTTTTAGCTGCGGAGGCTCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063918.4 ENSMUST00000223305.2 |
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| CDS GCA 72 bp | GGCAAAGGGCGAGCTGGAAGCGGCAGCCGCCGCAGCTaGTGCCGCTGCGGCGGCGCTGCTGGAGGTGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: GKGRAGSGSRRS*CRCGGAAGGER Trigger: TCTCTCACCTCCAGCAGCGCCGCCGCAGCGGCAGCAGCTGCGGCGGCTGCCGCTTCCAGCTCGCCCTTTGCC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063918.4 ENSMUST00000223305.2 |
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| CDS CCA 72 bp | CCGGGTGCAGCGAGCCGGGCAGCGCTGCCGCCCCATTaGGGTTCTGCACGTCGATCCAGCCCGCGCCCACAT | + |
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Preference number: 6 (lower is better) Translates to: PGAASRAALPPH*GSARRSSPRPH Trigger: ATGTGGGCGCGGGCTGGATCGACGTGCAGAACCCCAATGGGGCGGCAGCGCTGCCCGGCTCGCTGCACCCGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS GCA 72 bp | AGCGAGCCGGGCAGCGCTGCCGCCCCATTGGGGTTCTaGACGTCGATCCAGCCCGCGCCCACATCCCACCAG | + |
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Preference number: 6 (lower is better) Translates to: SEPGSAAAPLGF*TSIQPAPTSHQ Trigger: CTGGTGGGATGTGGGCGCGGGCTGGATCGACGTGCAGAACCCCAATGGGGCGGCAGCGCTGCCCGGCTCGCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS GCA 72 bp | TCAGGGGAGTGGCAAGGAGGGCTTCCCGCCGCGCTGTaGTCGCTGTCGGTGTCGCTGCCTTTCTTGCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: SGEWQGGLPAAL*SLSVSLPFLPP Trigger: CGGCGGCAAGAAAGGCAGCGACACCGACAGCGAGCACAGCGCGGCGGGAAGCCCTCCTTGCCACTCCCCTGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS CCA 72 bp | CCGAGACGCCCGGAGCCTGGAACACAGAGTAGTCGTTaGCAAAGGGCGAGCTGGAAGCGGCAGCCGCCGCAG | + |
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Preference number: 6 (lower is better) Translates to: PRRPEPGTQSSR*QRASWKRQPPQ Trigger: CTGCGGCGGCTGCCGCTTCCAGCTCGCCCTTTGCCAACGACTACTCTGTGTTCCAGGCTCCGGGCGTCTCGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063918.4 ENSMUST00000223305.2 |
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| CDS TCA 72 bp | CAGGCCGGAATAATCCGAGTTGTAGCCTCCCAGCGGTaGATGCAGCGACGTCTGAAGGCCCCCGGCCGCCGG | + |
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Preference number: 6 (lower is better) Translates to: QAGIIRVVASQR*MQRRLKAPGRR Trigger: CCGGCGGCCGGGGGCCTTCAGACGTCGCTGCATTCACCGCTGGGAGGCTACAACTCGGATTATTCCGGCCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS GCA 72 bp | GAGCCGGGCAATACCGGCTTGAAACCGTCCATGAGGTaGTGTCCTGCAGGGCTGAGCAGGTGCGACGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: EPGNTGLKPSMR*CPAGLSRCDEA Trigger: TGCCTCGTCGCACCTGCTCAGCCCTGCAGGACAGCACCTCATGGACGGTTTCAAGCCGGTATTGCCCGGCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS CAA 90 bp | GAGGCCCCCGACACACCGAAGCTAGAGAGACTGGAACCCACTACGTaGCAGCTGCCGGAGGAGGAAGACGAGGAGCGTTTCCAAGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: EAPDTPKLERLEPTT*QLPEEEDEERFQGW Trigger: CCACCCTTGGAAACGCTCCTCGTCTTCCTCCTCCGGCAGCTGCAACGTAGTGGGTTCCAGTCTCTCTAGCTTCGGTGTGTCGGGGGCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063918.4 ENSMUST00000223305.2 |
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| CDS GCA 72 bp | AGGGCTGAGCAGGTGCGACGAGGCACCGCTACTGAATaGGGAGTGGCTCAGGCCGGAATAATCCGAGTTGTA | + |
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Preference number: 6 (lower is better) Translates to: RAEQVRRGTATE*GVAQAGIIRVV Trigger: TACAACTCGGATTATTCCGGCCTGAGCCACTCCGCATTCAGTAGCGGTGCCTCGTCGCACCTGCTCAGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063918.4 |
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| CDS CCA 72 bp | TCCGTCCACCGACGTGTGCACCTTGGAGATAAACACTaGCTGATGGGAGCTATCCTGCGAGTGCGCTCCGGA | + |
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Preference number: 6 (lower is better) Translates to: SVHRRVHLGDKH*LMGAILRVRSG Trigger: TCCGGAGCGCACTCGCAGGATAGCTCCCATCAGCCAGTGTTTATCTCCAAGGTGCACACGTCGGTGGACGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063918.4 ENSMUST00000223305.2 |
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| CDS CCA 72 bp | CTGCCGGAGGAGGAAGACGAGGAGCGTTTCCAAGGGTaGAAGCCTTTACCGAAGGAAGAAGAGCTGTCCGAC | + |
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Preference number: 6 (lower is better) Translates to: LPEEEDEERFQG*KPLPKEEELSD Trigger: GTCGGACAGCTCTTCTTCCTTCGGTAAAGGCTTCCACCCTTGGAAACGCTCCTCGTCTTCCTCCTCCGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063918.4 ENSMUST00000223305.2 |
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| CDS CAA 72 bp | GACACACCGAAGCTAGAGAGACTGGAACCCACTACGTaGCAGCTGCCGGAGGAGGAAGACGAGGAGCGTTTC | + |
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Preference number: 6 (lower is better) Translates to: DTPKLERLEPTT*QLPEEEDEERF Trigger: GAAACGCTCCTCGTCTTCCTCCTCCGGCAGCTGCAACGTAGTGGGTTCCAGTCTCTCTAGCTTCGGTGTGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063918.4 ENSMUST00000223305.2 |
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