Pregenerated sensors for SP5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075304Ensembl transcript IDs: ENSMUST00000100043.3
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTGGGGTAACTCAACTACGACCCAGTTTCCTGTCCTGCCTGCCCTaGCCTCTGCTCTTGGGCTGGACAGCAAGACTTCGGGCGGAGGAG | + |
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Preference number: 1 (lower is better) Translates to: PGVTQLRPSFLSCLP*PLLLGWTARLRAEE Trigger: CTCCTCCGCCCGAAGTCTTGCTGTCCAGCCCAAGAGCAGAGGGCAGGGCAGGCAGGACAGGAAACTGGGTCGTAGTTGAGTTACCCCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR CCA 90 bp | TCAGCTACCTCGATGGCAAGTACCCTGGTGTGCCAGCAAAGGTGCTaGGAAAGATGTCTTGGGCAGGAGTGGCCTCGAAAGTGTCCCGGT | + |
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Preference number: 1 (lower is better) Translates to: SATSMASTLVCQQRC*ERCLGQEWPRKCPG Trigger: ACCGGGACACTTTCGAGGCCACTCCTGCCCAAGACATCTTTCCCAGCACCTTTGCTGGCACACCAGGGTACTTGCCATCGAGGTAGCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR GCA 90 bp | TTGTCAGCTACCTCGATGGCAAGTACCCTGGTGTGCCAGCAAAGGTaGTGGGAAAGATGTCTTGGGCAGGAGTGGCCTCGAAAGTGTCCC | + |
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Preference number: 1 (lower is better) Translates to: LSATSMASTLVCQQR*WERCLGQEWPRKCP Trigger: GGGACACTTTCGAGGCCACTCCTGCCCAAGACATCTTTCCCAGCACCTTTGCTGGCACACCAGGGTACTTGCCATCGAGGTAGCTGACAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR-3UTR GCA 90 bp | CACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGGCCTGCCCTGCCCTCTaGTCTTGGGCTGGACAGCAA | + |
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Preference number: 2 (lower is better) Translates to: HAANCCSLYRNVPCCSSAACPAL*SWAGQQ Trigger: TTGCTGTCCAGCCCAAGAGCAGAGGGCAGGGCAGGC...CGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR-3UTR GCA 90 bp | TGGGGGTCTTCCCGAGGAGACCCTGGAATGAAGTATTTATTTTCACGCTGCCAACTGTCCTGCCTGCCCTaGCCTCTGCTCTTGGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: WGSSRGDPGMKYLFSRCQLSCLP*PLLLGW Trigger: CCAGCCCAAGAGCAGAGGGCAGGGCAGGCAGGACAG...TTGGCAGCGTGAAAATAAATACTTCATTCCAGGGTCTCCTCGGGAAGACCCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR-3UTR CCA 90 bp | CTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTGGACCTCTGCTCTTGGGCTaGACAGCAAGACTTCGGGCG | + |
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Preference number: 2 (lower is better) Translates to: LPTAVRFTETYHAVALRGPLLLG*TARLRA Trigger: CGCCCGAAGTCTTGCTGTCCAGCCCAAGAGCAGAGG...TCCACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR-3UTR GCA 90 bp | CTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTGGAGCAAGTACCCTGGTGTaGCAGCAAAGGTGCTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: LPTAVRFTETYHAVALRGASTLV*QQRCWE Trigger: TTCCCAGCACCTTTGCTGGCACACCAGGGTACTTGC...TCCACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR-3UTR CCA 90 bp | TGGGGGTCTTCCCGAGGAGACCCTGGAATGAAGTATTTATTTTCACGCTGCCAATGTCTTGGGCAGGAGTaGCCTCGAAAGTGTCCCGGT | + |
|
Preference number: 2 (lower is better) Translates to: WGSSRGDPGMKYLFSRCQCLGQE*PRKCPG Trigger: ACCGGGACACTTTCGAGGCCACTCCTGCCCAAGACA...TTGGCAGCGTGAAAATAAATACTTCATTCCAGGGTCTCCTCGGGAAGACCCCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR-3UTR CCA 90 bp | ACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTCGATGGCAAGTACCCTaGTGTGCCAGCAAAGGTGCT | + |
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Preference number: 2 (lower is better) Translates to: TLPTAVRFTETYHAVALRRWQVP*CASKGA Trigger: AGCACCTTTGCTGGCACACCAGGGTACTTGCCATCG...ACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR-3UTR CCA 90 bp | ACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTTGCCAGCAAAGGTGCTaGGAAAGATGTCTTGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: TLPTAVRFTETYHAVALRCQQRC*ERCLGQ Trigger: CTGCCCAAGACATCTTTCCCAGCACCTTTGCTGGCA...ACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR-3UTR CCA 90 bp | TGGGGGTCTTCCCGAGGAGACCCTGGAATGAAGTATTTATTTTCACGCTGCCAACGATGGCTCGGACTTTaGAATCCTCCTGGGGTAACT | + |
|
Preference number: 2 (lower is better) Translates to: WGSSRGDPGMKYLFSRCQRWLGL*NPPGVT Trigger: AGTTACCCCAGGAGGATTCCAAAGTCCGAGCCATCG...TTGGCAGCGTGAAAATAAATACTTCATTCCAGGGTCTCCTCGGGAAGACCCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR GCA 72 bp | ACCTCGATGGCAAGTACCCTGGTGTGCCAGCAAAGGTaGTGGGAAAGATGTCTTGGGCAGGAGTGGCCTCGA | + |
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Preference number: 3 (lower is better) Translates to: TSMASTLVCQQR*WERCLGQEWPR Trigger: TCGAGGCCACTCCTGCCCAAGACATCTTTCCCAGCACCTTTGCTGGCACACCAGGGTACTTGCCATCGAGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR CCA 72 bp | CCCAGGCAGGCGATGGCTCGGACTTTGGAATCCTCCTaGGGTAACTCAACTACGACCCAGTTTCCTGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: PRQAMARTLESS*GNSTTTQFPVL Trigger: CAGGACAGGAAACTGGGTCGTAGTTGAGTTACCCCAGGAGGATTCCAAAGTCCGAGCCATCGCCTGCCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR CCA 72 bp | TCGATGGCAAGTACCCTGGTGTGCCAGCAAAGGTGCTaGGAAAGATGTCTTGGGCAGGAGTGGCCTCGAAAG | + |
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Preference number: 3 (lower is better) Translates to: SMASTLVCQQRC*ERCLGQEWPRK Trigger: CTTTCGAGGCCACTCCTGCCCAAGACATCTTTCCCAGCACCTTTGCTGGCACACCAGGGTACTTGCCATCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR CCA 72 bp | TTTTTCAGCAGCGACTCCCACAAGCAAGGCCAGCCCTaGGTAAAATGTAAGTCTCCCAGGCAGGCGATGGCT | + |
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Preference number: 3 (lower is better) Translates to: FFSSDSHKQGQP*VKCKSPRQAMA Trigger: AGCCATCGCCTGCCTGGGAGACTTACATTTTACCCAGGGCTGGCCTTGCTTGTGGGAGTCGCTGCTGAAAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| 3UTR GCA 72 bp | TCTTTGTCAGCTACCTCGATGGCAAGTACCCTGGTGTaGCAGCAAAGGTGCTGGGAAAGATGTCTTGGGCAG | + |
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Preference number: 3 (lower is better) Translates to: SLSATSMASTLV*QQRCWERCLGQ Trigger: CTGCCCAAGACATCTTTCCCAGCACCTTTGCTGGCACACCAGGGTACTTGCCATCGAGGTAGCTGACAAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | AGGTGCTGGGAAAGATGTCTTGGGCAGGAGTGGCCTCGAAAGTGTCCCGGTGCGGGTCCGGGGAGGCGCTaGGGGTGCGGTCCTGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: RCWERCLGQEWPRKCPGAGPGRR*GCGPGG Trigger: TCCTCCAGGACCGCACCCCCAGCGCCTCCCCGGACC...CGCACCGGGACACTTTCGAGGCCACTCCTGCCCAAGACATCTTTCCCAGCACCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | AGGTGCTGGGAAAGATGTCTTGGGCAGGAGTGGCCTCGAAAGTGTCCCGGTGCGAGCGCCAGGGGCGAGTaGTTGCCCAGGTCCGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: RCWERCLGQEWPRKCPGASARGE*LPRSGE Trigger: CTCCCCGGACCTGGGCAAGCACTCGCCCCTGGCGCT...CGCACCGGGACACTTTCGAGGCCACTCCTGCCCAAGACATCTTTCCCAGCACCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | GTGTGCCAGCAAAGGTGCTGGGAAAGATGTCTTGGGCAGGAGTGGCCTCGAAAGCCAGGGGCGAGTGCTTaGCCAGGTCCGGGGAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: VCQQRCWERCLGQEWPRKPGASA*PGPGRR Trigger: GCGCCTCCCCGGACCTGGGCAAGCACTCGCCCCTGG...CTTTCGAGGCCACTCCTGCCCAAGACATCTTTCCCAGCACCTTTGCTGGCACAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR TCA 90 bp | CACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTGCAGCAGCGGCGGCTaGGGCAGGGAAGCGGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: HAANCCSLYRNVPCCSSACSSGG*GREAGS Trigger: GCTCCCCGCTTCCCTGCCTCAGCCGCCGCTGCTGCA...CGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | CACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGAGGGCGCCTGGCGAGTaGGCGGGCATGTCGGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: HAANCCSLYRNVPCCSSARAPGE*AGMSAV Trigger: GACTGCCGACATGCCCGCGCACTCGCCAGGCGCCCT...CGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | CACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGGTGAGCGGGAGCTCGTaGGCTGCCCCGAAGGACGGC | + |
|
Preference number: 4 (lower is better) Translates to: HAANCCSLYRNVPCCSSAVSGSS*AAPKDG Trigger: GCCGTCCTTCGGGGCAGCCCACGAGCTCCCGCTCAC...CGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | CTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTGGAGGGAAGCGGGGAGCGTaGGGAGGTCCGGCACAGGCG | + |
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Preference number: 4 (lower is better) Translates to: LPTAVRFTETYHAVALRGGKRGA*GGPAQA Trigger: CGCCTGTGCCGGACCTCCCCACGCTCCCCGCTTCCC...TCCACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | ACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTCGGGAGCTCGTGGGCTaGCCCGAAGGACGGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: TLPTAVRFTETYHAVALRRELVG*PEGRLQ Trigger: CTGCAGCCGTCCTTCGGGGCAGCCCACGAGCTCCCG...ACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | ACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTGGGGCGGGGGATAACTaGCGGCAGGTGGGCGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: TLPTAVRFTETYHAVALRGAGDN*RQVGGG Trigger: TCCACCGCCCACCTGCCGCCAGTTATCCCCCGCCCC...ACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | AGGTGCTGGGAAAGATGTCTTGGGCAGGAGTGGCCTCGAAAGTGTCCCGGTGCGAGCAGCGCGGCGATCTaGCTCTGGTACTGTGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: RCWERCLGQEWPRKCPGASSAAI*LWYCAK Trigger: CTTTGCACAGTACCAGAGCCAGATCGCCGCGCTGCT...CGCACCGGGACACTTTCGAGGCCACTCCTGCCCAAGACATCTTTCCCAGCACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | TGGGGGTCTTCCCGAGGAGACCCTGGAATGAAGTATTTATTTTCACGCTGCCAAGGGAGGCGCTGGGGGTaGGGTCCTGGAGGAAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: WGSSRGDPGMKYLFSRCQGRRWG*GPGGRP Trigger: AGGCCTTCCTCCAGGACCGCACCCCCAGCGCCTCCC...TTGGCAGCGTGAAAATAAATACTTCATTCCAGGGTCTCCTCGGGAAGACCCCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | TTCACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGATCCGGCTACAGGTaGCGGCCAGCAGCGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: FTLPTAVRFTETYHAVALRSGYR*RPAAPG Trigger: CCCTGGCGCTGCTGGCCGCCACCTGTAGCCGGATCG...CAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | TTCACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGGCGGGGGCAGCAGGTTaGAGTAGCCCGGGGGCAACG | + |
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Preference number: 4 (lower is better) Translates to: FTLPTAVRFTETYHAVALAGAAG*SSPGAT Trigger: CGTTGCCCCCGGGCTACTCCAACCTGCTGCCCCCGC...CAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | ACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTAGGCGCTGGAGAGGCTaGTCCCTGGAACCCCGGAGC | + |
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Preference number: 4 (lower is better) Translates to: TLPTAVRFTETYHAVALRRRWRG*SLEPRS Trigger: GCTCCGGGGTTCCAGGGACCAGCCTCTCCAGCGCCT...ACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | CACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGGTCCGGCACAGGCGCTaGAGAGGCTGGTCCCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: HAANCCSLYRNVPCCSSAVRHRR*RGWSLE Trigger: TTCCAGGGACCAGCCTCTCCAGCGCCTGTGCCGGAC...CGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR TCA 90 bp | TTCACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGGAGGAAGGCCTGCAGTaGGTCGTTCCGGAGGACGGC | + |
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Preference number: 4 (lower is better) Translates to: FTLPTAVRFTETYHAVALEEGLQ*VVPEDG Trigger: GCCGTCCTCCGGAACGACTCACTGCAGGCCTTCCTC...CAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | CACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGCGTGTTGCTTCTTTTTaGCCGGTTCCGCCTCGGGGG | + |
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Preference number: 4 (lower is better) Translates to: HAANCCSLYRNVPCCSSARVASF*PVPPRG Trigger: CCCCCGAGGCGGAACCGGGCAAAAAGAAGCAACACG...CGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR TCA 90 bp | CACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTCGAGGGCAGCATCTTaGCCGGCGAGAACTCGTAAG | + |
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Preference number: 4 (lower is better) Translates to: HAANCCSLYRNVPCCSSASRAAS*PARTRK Trigger: CTTACGAGTTCTCGCCGGTCAAGATGCTGCCCTCGA...CGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | ACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTTCCTGGAGGAAGGCCTaGAGTGAGTCGTTCCGGAGG | + |
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Preference number: 4 (lower is better) Translates to: TLPTAVRFTETYHAVALRSWRKA*SESFRR Trigger: CCTCCGGAACGACTCACTGCAGGCCTTCCTCCAGGA...ACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | TGGGGGTCTTCCCGAGGAGACCCTGGAATGAAGTATTTATTTTCACGCTGCCAAGCCCCGAAGGACGGCTaGAGGTGTGTTTTCTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: WGSSRGDPGMKYLFSRCQAPKDG*RCVFCG Trigger: GCCGCAGAAAACACACCTGCAGCCGTCCTTCGGGGC...TTGGCAGCGTGAAAATAAATACTTCATTCCAGGGTCTCCTCGGGAAGACCCCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | TCATTTAAAAAGTTACTCTTTGTCAGCTACCTCGATGGCAAGTACCCTGGTGTGGGCCCCGCGCCCGATTaGGGGATGCTCCACCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: SFKKLLFVSYLDGKYPGVGPAPD*GMLHQG Trigger: CCCCTGGTGGAGCATCCCGCAATCGGGCGCGGGGCC...CACACCAGGGTACTTGCCATCGAGGTAGCTGACAAAGAGTAACTTTTTAAATGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | TCATTTAAAAAGTTACTCTTTGTCAGCTACCTCGATGGCAAGTACCCTGGTGTGGCCGCAGCGCCGGGCTaGCCGATCCGGCTACAGGTG | + |
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Preference number: 4 (lower is better) Translates to: SFKKLLFVSYLDGKYPGVAAAPG*PIRLQV Trigger: CACCTGTAGCCGGATCGGCCAGCCCGGCGCTGCGGC...CACACCAGGGTACTTGCCATCGAGGTAGCTGACAAAGAGTAACTTTTTAAATGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | CACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGGCGTCTTCACGTGCTTaGCGAGGTGATCGCTTCGCA | + |
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Preference number: 4 (lower is better) Translates to: HAANCCSLYRNVPCCSSAASSRA*RGDRFA Trigger: TGCGAAGCGATCACCTCGCCAAGCACGTGAAGACGC...CGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | TGGGGGTCTTCCCGAGGAGACCCTGGAATGAAGTATTTATTTTCACGCTGCCAATGCAGGTGTGTTTTCTaGGGCGTCAGCCCCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: WGSSRGDPGMKYLFSRCQCRCVF*GVSPRL Trigger: CAGCCTGGGGCTGACGCCGCAGAAAACACACCTGCA...TTGGCAGCGTGAAAATAAATACTTCATTCCAGGGTCTCCTCGGGAAGACCCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | TCATTTAAAAAGTTACTCTTTGTCAGCTACCTCGATGGCAAGTACCCTGGTGTGGGAGAGGCTGGTCCCTaGAACCCCGGAGCTCCCCGG | + |
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Preference number: 4 (lower is better) Translates to: SFKKLLFVSYLDGKYPGVGEAGP*NPGAPR Trigger: CCGGGGAGCTCCGGGGTTCCAGGGACCAGCCTCTCC...CACACCAGGGTACTTGCCATCGAGGTAGCTGACAAAGAGTAACTTTTTAAATGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | GTGTGCCAGCAAAGGTGCTGGGAAAGATGTCTTGGGCAGGAGTGGCCTCGAAAGAGCTTCTTATTTTGGTaGGTCTTCACGTGCTTGGCG | + |
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Preference number: 4 (lower is better) Translates to: VCQQRCWERCLGQEWPRKSFLFW*VFTCLA Trigger: CGCCAAGCACGTGAAGACGCACCAAAATAAGAAGCT...CTTTCGAGGCCACTCCTGCCCAAGACATCTTTCCCAGCACCTTTGCTGGCACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR TCA 90 bp | TGGGGGTCTTCCCGAGGAGACCCTGGAATGAAGTATTTATTTTCACGCTGCCAACGGCCTCAGCGACTTTaGGCTTCTTATTTTGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: WGSSRGDPGMKYLFSRCQRPQRL*ASYFGA Trigger: CGCACCAAAATAAGAAGCTCAAAGTCGCTGAGGCCG...TTGGCAGCGTGAAAATAAATACTTCATTCCAGGGTCTCCTCGGGAAGACCCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR TCA 90 bp | GTTCATTTAAAAAGTTACTCTTTGTCAGCTACCTCGATGGCAAGTACCCTGGTGGGTGATCGCTTCGCATaGAGCGTTTGCCGCACTCGG | + |
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Preference number: 4 (lower is better) Translates to: VHLKSYSLSATSMASTLVGDRFA*SVCRTR Trigger: CCGAGTGCGGCAAACGCTTCATGCGAAGCGATCACC...CACCAGGGTACTTGCCATCGAGGTAGCTGACAAAGAGTAACTTTTTAAATGAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | TCATTTAAAAAGTTACTCTTTGTCAGCTACCTCGATGGCAAGTACCCTGGTGTGCTGGCTCTGGTACTGTaGAAAGTCCGACGGGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: SFKKLLFVSYLDGKYPGVLALVL*KVRRAQ Trigger: TTGGGCCCGTCGGACTTTGCACAGTACCAGAGCCAG...CACACCAGGGTACTTGCCATCGAGGTAGCTGACAAAGAGTAACTTTTTAAATGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | GTTCATTTAAAAAGTTACTCTTTGTCAGCTACCTCGATGGCAAGTACCCTGGTGGCGGCGATCTGGCTCTaGTACTGTGCAAAGTCCGAC | + |
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Preference number: 4 (lower is better) Translates to: VHLKSYSLSATSMASTLVAAIWL*YCAKSD Trigger: GTCGGACTTTGCACAGTACCAGAGCCAGATCGCCGC...CACCAGGGTACTTGCCATCGAGGTAGCTGACAAAGAGTAACTTTTTAAATGAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | CTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTGGATTGAGCTTCTTATTTTaGTGCGTCTTCACGTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: LPTAVRFTETYHAVALRGLSFLF*CVFTCL Trigger: CAAGCACGTGAAGACGCACCAAAATAAGAAGCTCAA...TCCACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR GCA 90 bp | GTTCATTTAAAAAGTTACTCTTTGTCAGCTACCTCGATGGCAAGTACCCTGGTGACGTGGCACACGTGTTaGTTCTTTTTGCCCGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: VHLKSYSLSATSMASTLVTWHTC*FFLPGS Trigger: GGAACCGGGCAAAAAGAAGCAACACGTGTGCCACGT...CACCAGGGTACTTGCCATCGAGGTAGCTGACAAAGAGTAACTTTTTAAATGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CCA 90 bp | GTTCATTTAAAAAGTTACTCTTTGTCAGCTACCTCGATGGCAAGTACCCTGGTGTCGGCAGTCCAAGGGTaGAAAAGTCTGGAGGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: VHLKSYSLSATSMASTLVSAVQG*KSLEGE Trigger: TTCACCCTCCAGACTTTTCCACCCTTGGACTGCCGA...CACCAGGGTACTTGCCATCGAGGTAGCTGACAAAGAGTAACTTTTTAAATGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS CCA 90 bp | CTGGCGAGTGCGCGGGCATGTCGGCAGTCCAAGGGTGGAAAAGTCTaGAGGGTGAACCCAGCGCTGGGTCATAGGGCACCTGAAGGAAGT | + |
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Preference number: 5 (lower is better) Translates to: LASARACRQSKGGKV*RVNPALGHRAPEGS Trigger: ACTTCCTTCAGGTGCCCTATGACCCAGCGCTGGGTTCACCCTCCAGACTTTTCCACCCTTGGACTGCCGACATGCCCGCGCACTCGCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CAA 90 bp | TGGGGGTCTTCCCGAGGAGACCCTGGAATGAAGTATTTATTTTCACGCTGCCAAGCCAGGGGCGAGTGCTaGCCCAGGTCCGGGGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: WGSSRGDPGMKYLFSRCQARGEC*PRSGEA Trigger: CGCCTCCCCGGACCTGGGCAAGCACTCGCCCCTGGC...TTGGCAGCGTGAAAATAAATACTTCATTCCAGGGTCTCCTCGGGAAGACCCCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CAA 90 bp | TGGGGGTCTTCCCGAGGAGACCCTGGAATGAAGTATTTATTTTCACGCTGCCAACGGCCCCGCGCCCGATaGCGGGATGCTCCACCAGGG | + |
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Preference number: 5 (lower is better) Translates to: WGSSRGDPGMKYLFSRCQRPRAR*RDAPPG Trigger: CCCTGGTGGAGCATCCCGCAATCGGGCGCGGGGCCG...TTGGCAGCGTGAAAATAAATACTTCATTCCAGGGTCTCCTCGGGAAGACCCCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CAA 90 bp | CACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGCTTCGCATGAAGCGTTaGCCGCACTCGGGACAAGCG | + |
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Preference number: 5 (lower is better) Translates to: HAANCCSLYRNVPCCSSALRMKR*PHSGQA Trigger: CGCTTGTCCCGAGTGCGGCAAACGCTTCATGCGAAG...CGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CAA 90 bp | CTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTGGAGTTTTGCCGTACACCTaGCCACAGCCTGGCACGTGG | + |
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Preference number: 5 (lower is better) Translates to: LPTAVRFTETYHAVALRGVLPYT*PQPGTW Trigger: CCACGTGCCAGGCTGTGGCAAGGTGTACGGCAAAAC...TCCACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CAA 90 bp | TGGGGGTCTTCCCGAGGAGACCCTGGAATGAAGTATTTATTTTCACGCTGCCAAACGTGTTGCTTCTTTTaGCCCGGTTCCGCCTCGGGG | + |
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Preference number: 5 (lower is better) Translates to: WGSSRGDPGMKYLFSRCQTCCFF*PGSASG Trigger: CCCCGAGGCGGAACCGGGCAAAAAGAAGCAACACGT...TTGGCAGCGTGAAAATAAATACTTCATTCCAGGGTCTCCTCGGGAAGACCCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CAA 90 bp | TTCACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCACGTGGCACACGTGTaGCTTCTTTTTGCCCGGTTC | + |
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Preference number: 5 (lower is better) Translates to: FTLPTAVRFTETYHAVALHVAHV*LLFARF Trigger: GAACCGGGCAAAAAGAAGCAACACGTGTGCCACGTG...CAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGTGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CAA 90 bp | ACGCTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTCCGGCCTCAGCGACTTaGAGCTTCTTATTTTGGTGC | + |
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Preference number: 5 (lower is better) Translates to: TLPTAVRFTETYHAVALRPASAT*SFLFWC Trigger: GCACCAAAATAAGAAGCTCAAAGTCGCTGAGGCCGG...ACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAGCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS-3UTR CAA 90 bp | CTGCCAACTGCTGTTCGCTTTACAGAAACGTACCATGCTGTAGCTCTGCGTGGATTTGAGCTTCTTATTTaGGTGCGTCTTCACGTGCTT | + |
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Preference number: 5 (lower is better) Translates to: LPTAVRFTETYHAVALRGFELLI*VRLHVL Trigger: AAGCACGTGAAGACGCACCAAAATAAGAAGCTCAAA...TCCACGCAGAGCTACAGCATGGTACGTTTCTGTAAAGCGAACAGCAGTTGGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS GCA 72 bp | CAGCGCTGGGTCATAGGGCACCTGAAGGAAGTCGGGTaGCGCCGCAGCGCCGGGCTGGCCGATCCGGCTACA | + |
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Preference number: 6 (lower is better) Translates to: QRWVIGHLKEVG*RRSAGLADPAT Trigger: TGTAGCCGGATCGGCCAGCCCGGCGCTGCGGCGGCACCCGACTTCCTTCAGGTGCCCTATGACCCAGCGCTG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS CCA 72 bp | CCTGGCGAGTGCGCGGGCATGTCGGCAGTCCAAGGGTaGAAAAGTCTGGAGGGTGAACCCAGCGCTGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: PGECAGMSAVQG*KSLEGEPSAGS Trigger: TGACCCAGCGCTGGGTTCACCCTCCAGACTTTTCCACCCTTGGACTGCCGACATGCCCGCGCACTCGCCAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS CCA 72 bp | GCGCGGGCATGTCGGCAGTCCAAGGGTGGAAAAGTCTaGAGGGTGAACCCAGCGCTGGGTCATAGGGCACCT | + |
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Preference number: 6 (lower is better) Translates to: ARACRQSKGGKV*RVNPALGHRAP Trigger: AGGTGCCCTATGACCCAGCGCTGGGTTCACCCTCCAGACTTTTCCACCCTTGGACTGCCGACATGCCCGCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS CCA 72 bp | GGGGCCTTGGTCTGCAGCAGCGCGGCGATCTGGCTCTaGTACTGTGCAAAGTCCGACGGGCCCAACACTAGA | + |
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Preference number: 6 (lower is better) Translates to: GALVCSSAAIWL*YCAKSDGPNTR Trigger: TCTAGTGTTGGGCCCGTCGGACTTTGCACAGTACCAGAGCCAGATCGCCGCGCTGCTGCAGACCAAGGCCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS TCA 72 bp | TGGCAGGCAGAGCAGCCATGCTCGAGGGCAGCATCTTaGCCGGCGAGAACTCGTAAGGGTACGACGGATCCG | + |
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Preference number: 6 (lower is better) Translates to: WQAEQPCSRAAS*PARTRKGTTDP Trigger: CGGATCCGTCGTACCCTTACGAGTTCTCGCCGGTCAAGATGCTGCCCTCGAGCATGGCTGCTCTGCCTGCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS TCA 72 bp | GCGGATTCTCCCGCTTCACCCCGGCCTCAGCGACTTTaGGCTTCTTATTTTGGTGCGTCTTCACGTGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: ADSPASPRPQRL*ASYFGASSRAW Trigger: CCAAGCACGTGAAGACGCACCAAAATAAGAAGCTCAAAGTCGCTGAGGCCGGGGTGAAGCGGGAGAATCCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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| CDS CAA 72 bp | CGCGGATTCTCCCGCTTCACCCCGGCCTCAGCGACTTaGAGCTTCTTATTTTGGTGCGTCTTCACGTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: RGFSRFTPASAT*SFLFWCVFTCL Trigger: CAAGCACGTGAAGACGCACCAAAATAAGAAGCTCAAAGTCGCTGAGGCCGGGGTGAAGCGGGAGAATCCGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100043.3 |
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