Pregenerated sensors for SP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027109Ensembl transcript IDs: ENSMUST00000066003.7, ENSMUST00000102689.10
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGGCGAGCGGTGACGGCTaGGTGTCCTGGGCCGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKASGDG*VSWAAA Trigger: GGCGGCGGCCCAGGACACTCAGCCGTCACCGCTCGC...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR CCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGTGTAGATACTCGCCGTaGCCGCCGCCGCCTCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKCRYSP*PPPPPP Trigger: CGGCGGAGGCGGCGGCGGCCACGGCGAGTATCTACA...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR GCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGGCCGCGCCGTTTCCGTaGTGCTGCTGTTGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKAAPFP*CCCCCC Trigger: GCAGCAGCAACAGCAGCAGCACGGAAACGGCGCGGC...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR GCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGGCGCCGTTTCCGTGCTaGTGCTGTTGCTGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKAPFPC*CCCCCC Trigger: GCAGCAGCAGCAACAGCAGCAGCACGGAAACGGCGC...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR GCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGCCGTTTCCGTGCTGCTaGTGTTGCTGCTGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKPFPCC*CCCCCC Trigger: GCAGCAGCAGCAGCAACAGCAGCAGCACGGAAACGG...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR TCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGCCTGCAGTCATTGTCTaGGAACTTCCCGAGAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKPAVIV*ELPESP Trigger: GGGACTCTCGGGAAGTTCTCAGACAATGACTGCAGG...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR TCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGCGACTTGACCAAGCGTaGGTGTCTGAACAGGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKRLDQA*VSEQAS Trigger: TGACGCCTGTTCAGACACTCACGCTTGGTCAAGTCG...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR GCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGTGTTGCTGCTGCTGCTaGTGTAGATACTCGCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKCCCCC*CRYSPW Trigger: CCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACA...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR GCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGTGCTGTTGCTGCTGCTaGTGCTGTAGATACTCGCCG | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKCCCCC*CCRYSP Trigger: CGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCA...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR GCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGAGTCAAGGCTCCACCTaGTGCGACTTGACCAAGCGT | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKSQGST*CDLTKR Trigger: ACGCTTGGTCAAGTCGCAGCAGGTGGAGCCTTGACT...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR GCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGTGCTGCTGTTGCTGCTaGTGCTGCTGTAGATACTCG | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKCCCCC*CCCRYS Trigger: CGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCA...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR GCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGGAGTCACCACTGAGCTaGCATTCTTCAGGGTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKESPLS*HSSGSG Trigger: ACCTGACCCTGAAGAATGGCAGCTCAGTGGTGACTC...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR TCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGTATCTGAGGAGCCTGTaGAGCCAATCTGAACCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKYLRSL*SQSEPA Trigger: AGCAGGTTCAGATTGGCTTCACAGGCTCCTCAGATA...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR TCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGGACAGTTCCTATCCCTaGCACAGACCCCTGTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKDSSYP*HRPLLN Trigger: ATTCAACAGGGGTCTGTGTCAGGGATAGGAACTGTC...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR TCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGCCAAGCGTGAGTGTCTaGACAGGCGTCAAAGTAATT | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKPSVSV*TGVKVI Trigger: AATTACTTTGACGCCTGTTCAGACACTCACGCTTGG...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR TCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGTGGTGGCAGAAGTATTaGCAGTTCCTATCCCTGACA | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKWWQKY*QFLSLT Trigger: TGTCAGGGATAGGAACTGTCAATACTTCTGCCACCA...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR CCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGTTGGGCTTGACTGGTTaGCTGCTGAGAATCTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKLGLTG*LLRILK Trigger: CTTCAAGATTCTCAGCAGCCAACCAGTCAAGCCCAA...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR CCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGCAATTTGGGCTTGACTaGTTGGCTGCTGAGAATCTT | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKQFGLD*LAAENL Trigger: AAGATTCTCAGCAGCCAACCAGTCAAGCCCAAATTG...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR CCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGTCTTTTTCCCAAGATTaGTACCTCTCCCACCACCTT | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKSFSQD*YLSHHL Trigger: AAGGTGGTGGGAGAGGTACCAATCTTGGGAAAAAGA...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR CCA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGCTTGATACTGAACATTaGACACTGTGCCATTTGATG | + |
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Preference number: 4 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKLDTEH*TLCHLM Trigger: CATCAAATGGCACAGTGTCCAATGTTCAGTATCAAG...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS GCA 90 bp | GCCGCCGCCGCCGCCGCGCCGTTTCCGTGCTGCTGCTGTTGCTGCTaGTGCTGCTGTAGATACTCGCCGTGGCCGCCGCCGCCTCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: AAAAAAPFPCCCCCC*CCCRYSPWPPPPPP Trigger: CGGCGGAGGCGGCGGCGGCCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCAGCACGGAAACGGCGCGGCGGCGGCGGCGGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066003.7 ENSMUST00000102689.10 |
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| CDS CCA 90 bp | CCGTGCTGCTGCTGTTGCTGCTGCTGCTGCTGTAGATACTCGCCGTaGCCGCCGCCGCCTCCGCCGCCGTCCACGTCCAAGGCAGCCATT | + |
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Preference number: 5 (lower is better) Translates to: PCCCCCCCCCCRYSP*PPPPPPPSTSKAAI Trigger: AATGGCTGCCTTGGACGTGGACGGCGGCGGAGGCGGCGGCGGCCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCAGCACGG 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066003.7 ENSMUST00000102689.10 |
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| CDS-3UTR CAA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGGGCAGCCATTTCCTCTaGTTTCACGGGCTTTTCGGG | + |
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Preference number: 5 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKGSHFL*FHGLFG Trigger: CCCGAAAAGCCCGTGAAACAAGAGGAAATGGCTGCC...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR CAA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGTTTGGGCTTGACTGGTaGGCTGCTGAGAATCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKFGLDW*AAENLE Trigger: TTCAAGATTCTCAGCAGCCAACCAGTCAAGCCCAAA...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR CAA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGTCAGGTTCCTCTTCCTaGATCCTAATATCTGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKSGSSS*ILISAG Trigger: TCCTGCAGATATTAGGATCAAGGAAGAGGAACCTGA...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR CAA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGAAATGTGTTAGGTCATaGGTGTTCAGTGTAGAGTCA | + |
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Preference number: 5 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKKCVRS*VFSVES Trigger: TGACTCTACACTGAACACCAATGACCTAACACATTT...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS-3UTR CAA 90 bp | TTATCCATACCATTGCAGTATTTTAGATGCATCGGACTACAACAAACTCAAAAGCGTCAAAGTAATTTGTaGGGCAGCAGTATTTTGTAT | + |
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Preference number: 5 (lower is better) Translates to: LSIPLQYFRCIGLQQTQKRQSNL*GSSILY Trigger: ATACAAAATACTGCTGCCCAACAAATTACTTTGACG...CTTTTGAGTTTGTTGTAGTCCGATGCATCTAAAATACTGCAATGGTATGGATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102689.10 |
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| CDS GCA 72 bp | GCGCCGTTTCCGTGCTGCTGCTGTTGCTGCTGCTGCTaGTGTAGATACTCGCCGTGGCCGCCGCCGCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: APFPCCCCCCCC*CRYSPWPPPPP Trigger: CGGAGGCGGCGGCGGCCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCAGCACGGAAACGGCGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066003.7 ENSMUST00000102689.10 |
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| CDS GCA 72 bp | GCCGCGCCGTTTCCGTGCTGCTGCTGTTGCTGCTGCTaGTGCTGTAGATACTCGCCGTGGCCGCCGCCGCCT | + |
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Preference number: 6 (lower is better) Translates to: AAPFPCCCCCCC*CCRYSPWPPPP Trigger: AGGCGGCGGCGGCCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCAGCACGGAAACGGCGCGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066003.7 ENSMUST00000102689.10 |
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| CDS CAA 72 bp | TCATCTACCACTTGTACTCGTAAATGTGTTAGGTCATaGGTGTTCAGTGTAGAGTCACCACTGAGCTGCCAT | + |
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Preference number: 6 (lower is better) Translates to: SSTTCTRKCVRS*VFSVESPLSCH Trigger: ATGGCAGCTCAGTGGTGACTCTACACTGAACACCAATGACCTAACACATTTACGAGTACAAGTGGTAGATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066003.7 ENSMUST00000102689.10 |
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| CDS TCA 72 bp | GCCTGTGAAGCCAATCTGAACCTGCTGAGCGTCTGTTaGCTGAATTTGTGGTATTACTTGATACTGAACATT | + |
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Preference number: 6 (lower is better) Translates to: ACEANLNLLSVC*LNLWYYLILNI Trigger: AATGTTCAGTATCAAGTAATACCACAAATTCAGTCAACAGACGCTCAGCAGGTTCAGATTGGCTTCACAGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066003.7 ENSMUST00000102689.10 |
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