RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018678

Ensembl transcript IDs: ENSMUST00000062652.7, ENSMUST00000107623.8, ENSMUST00000107624.8

Found 309 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTaGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCAT +
Preference number: 1 (lower is better)
Translates to: RNRVPLCRDTATEQE*GEGCPGQSWAPVHH
Trigger: ATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR CCA 90 bp TATACACTGTACACAGTGGAGCTTGGGCAGGGGGAGATGAGGGCGTaGCGGGGTCAGGATGGAAGGTGTTCTCAGGTGAGTCCAGATTTG +
Preference number: 1 (lower is better)
Translates to: YTLYTVELGQGEMRA*RGQDGRCSQVSPDL
Trigger: CAAATCTGGACTCACCTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAGCTCCACTGTGTACAGTGTATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR TCA 90 bp GGCAACGTTCTCCGTAGAAAAGAGGGAGGGCAGGTCCTCGGCGTCTaGCCTTTCATAGGAAGTTGGAATGTTTGGAGGAGAGCCGTGGCA +
Preference number: 1 (lower is better)
Translates to: GNVLRRKEGGQVLGV*PFIGSWNVWRRAVA
Trigger: TGCCACGGCTCTCCTCCAAACATTCCAACTTCCTATGAAAGGTCAGACGCCGAGGACCTGCCCTCCCTCTTTTCTACGGAGAACGTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR CCA 90 bp AGGCACGGTGGGGGAGGGGGCATGGCACAATGGGACTCCGGCAGTGTTGAGGAAACGTCTCATTGGGCATaGCCAGTGTCCATGGCCTGG +
Preference number: 2 (lower is better)
Translates to: RHGGGGGMAQWDSGSVEETSHWA*PVSMAW
Trigger: CCAGGCCATGGACACTGGCCATGCCCAATGAGACGT...TTCCTCAACACTGCCGGAGTCCCATTGTGCCATGCCCCCTCCCCCACCGTGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR CAA 90 bp AGGGCAGGTCCTCGGCGTCTGACCTTTCATAGGAAGTTGGAATGTTaGGAGGAGAGCCGTGGCAGGGCTGGGCAGTGGAGTGGAGGCAGC +
Preference number: 2 (lower is better)
Translates to: RAGPRRLTFHRKLEC*EESRGRAGQWSGGS
Trigger: GCTGCCTCCACTCCACTGCCCAGCCCTGCCACGGCTCTCCTCCAAACATTCCAACTTCCTATGAAAGGTCAGACGCCGAGGACCTGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR GCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACGAGTGGGGTGAGGGCTaGCCAGGGCAGTCGTGGGCA +
Preference number: 2 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHEWGEG*PGQSWA
Trigger: TGCCCACGACTGCCCTGGGCAGCCCTCACCCCACTC...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR CCA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGGAGGGGCAGAGCCTTTaGAAGGAGGAGAACACAGGA +
Preference number: 2 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQEGQSL*KEENTG
Trigger: TCCTGTGTTCTCCTCCTTCCAAAGGCTCTGCCCCTC...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR GCA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGAACAGAGTCCCTCTCTaGAGGGACACAGCCACAGAA +
Preference number: 2 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQNRVPL*RDTATE
Trigger: TTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTT...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR GCA 90 bp AGGCACGGTGGGGGAGGGGGCATGGCACAATGGGACTCCGGCAGTGTTGAGGAAAACAGAGTCCCTCTCTaGAGGGACACAGCCACAGAA +
Preference number: 2 (lower is better)
Translates to: RHGGGGGMAQWDSGSVEENRVPL*RDTATE
Trigger: TTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTT...TTCCTCAACACTGCCGGAGTCCCATTGTGCCATGCCCCCTCCCCCACCGTGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR CCA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCACCAGGGCCAATCAGATaGGAGGTGTTCCATCTTCAG +
Preference number: 2 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPPGPIR*EVFHLQ
Trigger: CTGAAGATGGAACACCTCCCATCTGATTGGCCCTGG...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR CCA 90 bp CCTTTCATAGGAAGTTGGAATGTTTGGAGGAGAGCCGTGGCAGGGCTGGGCAGTGCCACAGAACAGGAGTaGGGTGAGGGCTGCCCAGGG +
Preference number: 2 (lower is better)
Translates to: PFIGSWNVWRRAVAGLGSATEQE*GEGCPG
Trigger: CCCTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGC...ACTGCCCAGCCCTGCCACGGCTCTCCTCCAAACATTCCAACTTCCTATGAAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR CCA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGGTTAGAACGTCTCATTaGGCATGGCCAGTGTCCATG +
Preference number: 2 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQVRTSH*AWPVSM
Trigger: CATGGACACTGGCCATGCCCAATGAGACGTTCTAAC...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR CCA 90 bp CACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCATGGCCTGGCCAGGGCCAATCAGATaGGAGGTGTTCCATCTTCAG +
Preference number: 2 (lower is better)
Translates to: HASWVRTSHWAWPVSMAWPGPIR*EVFHLQ
Trigger: CTGAAGATGGAACACCTCCCATCTGATTGGCCCTGG...CCAGGCCATGGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR CCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGCATGGCCAGTGTCCATaGCCTGGGCAGGCCAGGAGC +
Preference number: 2 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLHGQCP*PGQARS
Trigger: GCTCCTGGCCTGCCCAGGCCATGGACACTGGCCATG...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR TCA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGTGCTCCTCGACGGAGTaGAATGTATGTTTTTCCTTT +
Preference number: 2 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQCSSTE*NVCFSF
Trigger: AAAGGAAAAACATACATTTCACTCCGTCGAGGAGCA...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR CCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGGTCCCCACGCGTCCTaGGTTAGAACGTCTCATTGG +
Preference number: 2 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLGPHAS*VRTSHW
Trigger: CCAATGAGACGTTCTAACCCAGGACGCGTGGGGACC...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR CCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGTTAGAACGTCTCATTaGGCATGGCCAGTGTCCATG +
Preference number: 2 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLVRTSH*AWPVSM
Trigger: CATGGACACTGGCCATGCCCAATGAGACGTTCTAAC...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR-3UTR CAA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGGGGACTCCGGCAGTGTaGAGGAAGGGGATGGGGTGG +
Preference number: 3 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQGTPAV*RKGMGW
Trigger: CCACCCCATCCCCTTCCTCAACACTGCCGGAGTCCC...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR CCA 72 bp TGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATaGAAGGTGTTCTCAGGTGAGTCCAGATTTGAGTTG +
Preference number: 3 (lower is better)
Translates to: WAGGDEGVAGSG*KVFSGESRFEL
Trigger: CAACTCAAATCTGGACTCACCTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR TCA 72 bp CTCCGTAGAAAAGAGGGAGGGCAGGTCCTCGGCGTCTaGCCTTTCATAGGAAGTTGGAATGTTTGGAGGAGA +
Preference number: 3 (lower is better)
Translates to: LRRKEGGQVLGV*PFIGSWNVWRR
Trigger: TCTCCTCCAAACATTCCAACTTCCTATGAAAGGTCAGACGCCGAGGACCTGCCCTCCCTCTTTTCTACGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR CCA 72 bp TGTTTTTCCTTTGGAAATAAGGGTCCCCACGCGTCCTaGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCC +
Preference number: 3 (lower is better)
Translates to: CFSFGNKGPHAS*VRTSHWAWPVS
Trigger: GGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTTATTTCCAAAGGAAAAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGTGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCATGGACCACAGCTGGCTaGCCCCCGCCAGGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: SGVRAAQGSRGHLSIMDPWTTAG*PPPGLW
Trigger: CCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCA...TGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGTTGCTGGACCACAGCTaGCTGGCCCCCGCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRLLDHS*LAPARA
Trigger: AGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAA...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGTGGACCACAGCTGGCTaGCCCCCGCCAGGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQWTTAG*PPPGLW
Trigger: CCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCA...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GGCCCCTGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGTTGCTGGACCACAGCTaGCTGGCCCCCGCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: GPWVSLAAQEDLIEGDKELLDHS*LAPARA
Trigger: AGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAA...CTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCAGGGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGACGTTGGCCCCGCTCTaGACAGGGGTGGTAGTCGTA +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRTLAPL*TGVVVV
Trigger: TACGACTACCACCCCTGTGCAGAGCGGGGCCAACGT...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGTGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCATGGACCACCTGCTGCTaGTCAGCCTTGGGTGGCACC +
Preference number: 4 (lower is better)
Translates to: SGVRAAQGSRGHLSIMDPWTTCC*SALGGT
Trigger: GGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCA...TGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAACCACCCGCAGTGCCTaGTGGGGGATCTGGACCACC +
Preference number: 4 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPTTRSA*WGIWTT
Trigger: GGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGT...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GGCCCCTGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGACCACCCGCAGTGCCTaGTGGGGGATCTGGACCACC +
Preference number: 4 (lower is better)
Translates to: GPWVSLAAQEDLIEGDKETTRSA*WGIWTT
Trigger: GGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGT...CTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCAGGGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGCACGGTGGGGGAGGGGGCATGGCACAATGGGACTCCGGCAGTGTTGAGGAAGTGGCAGAGGCAGCTTaGACCACCCGCAGTGCCTGC +
Preference number: 4 (lower is better)
Translates to: RHGGGGGMAQWDSGSVEEVAEAA*TTRSAC
Trigger: GCAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCAC...TTCCTCAACACTGCCGGAGTCCCATTGTGCCATGCCCCCTCCCCCACCGTGCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGGATGCTCCCAGCAGGTaGAATCTTTGGCAGGGGCCG +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRDAPSR*NLWQGP
Trigger: CGGCCCCTGCCAAAGATTGCACCTGCTGGGAGCATC...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGTGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCACATGGCCTGAGCAGCTaGTGCCAGCTGTGCGGCGTT +
Preference number: 4 (lower is better)
Translates to: SGVRAAQGSRGHLSIMDPHGLSS*CQLCGV
Trigger: AACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATG...TGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGGCTGCTGCTCAGCCTTaGGTGGCACCACCTGGACTT +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRAAAQP*VAPPGL
Trigger: AAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGC...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGGGTTGCAGCTGTTGCTaGGGGGCTGTCCTGGACAAG +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRGCSCC*GAVLDK
Trigger: CTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAACC...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGGCACGGTGGGGGAGGGGGCATGGCACAATGGGACTCCGGCAGTGTTGAGGAAGTGTGCAGGCGGACGTaGGCCCGGAGCAAGGATGTC +
Preference number: 4 (lower is better)
Translates to: RHGGGGGMAQWDSGSVEEVCRRT*ARSKDV
Trigger: GACATCCTTGCTCCGGGCCCACGTCCGCCTGCACAC...TTCCTCAACACTGCCGGAGTCCCATTGTGCCATGCCCCCTCCCCCACCGTGCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGAGCAGGAGGTGTCACTaGAGCTTCAACAGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRSRRCH*SFNSWG
Trigger: CCCCCAGCTGTTGAAGCTGCAGTGACACCTCCTGCT...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGAGCACCGTCTCCACCTaGTCAGCCACAGCTACGGAT +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRSTVST*SATATD
Trigger: ATCCGTAGCTGTGGCTGAGCAGGTGGAGACGGTGCT...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGTGGACCACCTGCTGCTaGTCAGCCTTGGGTGGCACC +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQWTTCC*SALGGT
Trigger: GGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCA...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGTGGGGGTGGACCACCTGCTGCTaGTCAGCCTTGGGTGGCACC +
Preference number: 4 (lower is better)
Translates to: SLAAQEDLIEGDKEARWGWTTCC*SALGGT
Trigger: GGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCA...CCCCCACCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGTTGCACCACCCGCAGTaGCTGCTGGGGGATCTGGAC +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQLHHPQ*LLGDLD
Trigger: GTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAA...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGCATGGCCTGAGCAGCTaGTGCCAGCTGTGCGGCGTT +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQHGLSS*CQLCGV
Trigger: AACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATG...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCACATGGCCTGAGCAGCTaGTGCCAGCTGTGCGGCGTT +
Preference number: 4 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPHGLSS*CQLCGV
Trigger: AACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATG...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGTGGGGGTGCAGTTGGGACACGTaGAGGCCATGCGCCGCCGTT +
Preference number: 4 (lower is better)
Translates to: SLAAQEDLIEGDKEARWGCSWDT*RPCAAV
Trigger: AACGGCGGCGCATGGCCTGCACGTGTCCCAACTGCA...CCCCCACCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGACCACCTGGACTTGCTaGACCACAGCTGGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQTTWTC*TTAGWP
Trigger: GGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGT...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGGCCTGCTGGGGGATCTaGACCACCTGCTGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQACWGI*TTCCCS
Trigger: TGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGC...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGGCACGGTGGGGGAGGGGGCATGGCACAATGGGACTCCGGCAGTGTTGAGGAAGCCTGCTGGGGGATCTaGACCACCTGCTGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: RHGGGGGMAQWDSGSVEEACWGI*TTCCCS
Trigger: TGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGC...TTCCTCAACACTGCCGGAGTCCCATTGTGCCATGCCCCCTCCCCCACCGTGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGTGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGTTGCAGCTGTTGCTaGGGGGCTGTCCTGGACAAG +
Preference number: 4 (lower is better)
Translates to: SGVRAAQGSRGHLSIMDPGCSCC*GAVLDK
Trigger: CTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAACC...TGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GGCCCCTGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGACGTTGGCCCCGCTCTaGACAGGGGTGGTAGTCGTA +
Preference number: 4 (lower is better)
Translates to: GPWVSLAAQEDLIEGDKETLAPL*TGVVVV
Trigger: TACGACTACCACCCCTGTGCAGAGCGGGGCCAACGT...CTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCAGGGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGGGCACCACCTGGACTTaGTGGACCACAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: WVSLAAQEDLIEGDKEARGTTWT*WTTAGW
Trigger: CCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCC...CCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAATCTGGACCACCTGCTaGTGCTCAGCCTTGGGTGGC +
Preference number: 4 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPIWTTC*CSALGG
Trigger: GCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGAT...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGATCTGGACCACCTGCTaGTGCTCAGCCTTGGGTGGC +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQIWTTC*CSALGG
Trigger: GCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGAT...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGCACGGTGGGGGAGGGGGCATGGCACAATGGGACTCCGGCAGTGTTGAGGAAGGGATCTGGACCACCTaGTGCTGCTCAGCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: RHGGGGGMAQWDSGSVEEGIWTT*CCSALG
Trigger: ACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCC...TTCCTCAACACTGCCGGAGTCCCATTGTGCCATGCCCCCTCCCCCACCGTGCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGCACGGTGGGGGAGGGGGCATGGCACAATGGGACTCCGGCAGTGTTGAGGAAGATGCTCCCAGCAGGTaGAATCTTTGGCAGGGGCCG +
Preference number: 4 (lower is better)
Translates to: RHGGGGGMAQWDSGSVEEDAPSR*NLWQGP
Trigger: CGGCCCCTGCCAAAGATTGCACCTGCTGGGAGCATC...TTCCTCAACACTGCCGGAGTCCCATTGTGCCATGCCCCCTCCCCCACCGTGCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGGATGGCTGGGAGTCCTaGGTAGTAGCAGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQDGWES*VVAAAG
Trigger: GCCTGCTGCTGCTACTACCCAGGACTCCCAGCCATC...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGTGGGGGGATGGCTGGGAGTCCTaGGTAGTAGCAGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: SLAAQEDLIEGDKEARWGDGWES*VVAAAG
Trigger: GCCTGCTGCTGCTACTACCCAGGACTCCCAGCCATC...CCCCCACCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGA
63% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGCAGGGCCAAGGGAGATaGCTGGGAGTCCTGGGTAGT +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQQGQGR*LGVLGS
Trigger: ACTACCCAGGACTCCCAGCCATCTCCCTTGGCCCTG...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGTGGGCTGCACCTGGATaGTCTGGGAACTGTTCCCTT +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRWAAPG*SGNCSL
Trigger: AAGGGAACAGTTCCCAGACCATCCAGGTGCAGCCCA...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGGGCTTGGTTGGTGCCTaGGATGACCTGGATCTGGTT +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRGLVGA*DDLDLV
Trigger: AACCAGATCCAGGTCATCCCAGGCACCAACCAAGCC...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGACCACCTGGACTTGCTaGACCACAGCTGGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: WVSLAAQEDLIEGDKEARTTWTC*TTAGWP
Trigger: GGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGT...CCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGCTGCTCAGCCTTGGGTaGCACCACCTGGACTTGCTG +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQLLSLG*HHLDLL
Trigger: CAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAG...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGCTGCTCAGCCTTGGGTaGCACCACCTGGACTTGCTG +
Preference number: 4 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQLLSLG*HHLDLL
Trigger: CAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAG...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGATGTTGACGGGGTGGTaGTGGCTTGGTTGGTGCCTG +
Preference number: 4 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQMLTGW*WLGWCL
Trigger: CAGGCACCAACCAAGCCATCACCACCCCGTCAACAT...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGGGACAGGAGCTGGCTTaGTGGGGACAGGCTTATGAC +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQGQELA*WGQAYD
Trigger: GTCATAAGCCTGTCCCCATCAAGCCAGCTCCTGTCC...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp GGCCCCTGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGGACAGGAGCTGGCTTaGTGGGGACAGGCTTATGAC +
Preference number: 4 (lower is better)
Translates to: GPWVSLAAQEDLIEGDKEGQELA*WGQAYD
Trigger: GTCATAAGCCTGTCCCCATCAAGCCAGCTCCTGTCC...CTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCAGGGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp AGGCACGGTGGGGGAGGGGGCATGGCACAATGGGACTCCGGCAGTGTTGAGGAAGGACAGGAGCTGGCTTaGTGGGGACAGGCTTATGAC +
Preference number: 4 (lower is better)
Translates to: RHGGGGGMAQWDSGSVEEGQELA*WGQAYD
Trigger: GTCATAAGCCTGTCCCCATCAAGCCAGCTCCTGTCC...TTCCTCAACACTGCCGGAGTCCCATTGTGCCATGCCCCCTCCCCCACCGTGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGGGTGGGGTTCTGGATTaGAAACACAAACTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRGGVLD*KHKLPS
Trigger: GGAGGGCAGTTTGTGTTTGCAATCCAGAACCCCACC...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAATGGGGAGCTCGGAGTaGAGGGCTGTTACAGGTGAC +
Preference number: 4 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPMGSSE*RAVTGD
Trigger: GTCACCTGTAACAGCCCTGCACTCCGAGCTCCCCAT...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGTCTCCGGCTAGAGCCTaGTCCATCTGCAGCTGGATC +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQSPARA*SICSWI
Trigger: GATCCAGCTGCAGATGGAGCAGGCTCTAGCCGGAGA...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GGCCCCTGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGGGATGTGGCACACGTaGTTCTTCTTGCCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: GPWVSLAAQEDLIEGDKEGMWHT*FFLPCS
Trigger: GGAGCAGGGCAAGAAGAAGCACGTGTGCCACATCCC...CTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCAGGGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGCAGCAGTGGCGGCCATaGTCATCTGTGGATCTGCGC +
Preference number: 4 (lower is better)
Translates to: WVSLAAQEDLIEGDKEARQQWRP*SSVDLR
Trigger: GCGCAGATCCACAGATGAGCATGGCCGCCACTGCTG...CCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGGCCAAGGGAGATGGCTaGGAGTCCTGGGTAGTAGCA +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQAKGDG*ESWVVA
Trigger: TGCTACTACCCAGGACTCCCAGCCATCTCCCTTGGC...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGTGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCACTTCTGGACAGGAGCTaGCTTGATGGGGACAGGCTT +
Preference number: 4 (lower is better)
Translates to: SGVRAAQGSRGHLSIMDPLLDRS*LDGDRL
Trigger: AAGCCTGTCCCCATCAAGCCAGCTCCTGTCCAGAAG...TGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGCCCCATCCTTGCAGTTaGGACACGTGCAGGCCATGC +
Preference number: 4 (lower is better)
Translates to: WVSLAAQEDLIEGDKEARPHPCS*DTCRPC
Trigger: GCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGG...CCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGTATTCTTGCAGGGACTaGGAGGGAGAGGAGCGGGTT +
Preference number: 4 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQYSCRD*EGEERV
Trigger: AACCCGCTCCTCTCCCTCTCAGTCCCTGCAAGAATA...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGAGCTACGGATGGCTGTaGCACAGGGAGGCTCTTCTT +
Preference number: 4 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQSYGWL*HREALL
Trigger: AAGAAGAGCCTCCCTGTGTCACAGCCATCCGTAGCT...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGCTGGATGATGTTGTCTaGCGTGGTCTCTATCAGCAC +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRLDDVV*RGLYQH
Trigger: GTGCTGATAGAGACCACGGCAGACAACATCATCCAG...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGGACACGTGCAGGCCATaGGCCGCCGTTTCTCCCCAG +
Preference number: 4 (lower is better)
Translates to: GEHRNRVPLCRDTATEQEDTCRP*AAVSPQ
Trigger: CTGGGGAGAAACGGCGGCGCATGGCCTGCACGTGTC...CTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp ATAAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTGACACGTGCAGGCCATaGGCCGCCGTTTCTCCCCAG +
Preference number: 4 (lower is better)
Translates to: IRVPTRPGLERLIGHGQCDTCRP*AAVSPQ
Trigger: CTGGGGAGAAACGGCGGCGCATGGCCTGCACGTGTC...ACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGCTTCTGGACAGGAGCTaGCTTGATGGGGACAGGCTT +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQLLDRS*LDGDRL
Trigger: AAGCCTGTCCCCATCAAGCCAGCTCCTGTCCAGAAG...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGATTGCTGGACCACAGCTaGCTGGCCCCCGCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGLLDHS*LAPARA
Trigger: AGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAA...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GGCCCCTGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGAGCAGGTGCAATCTTTaGCAGGGGCCGCTCTTTTCG +
Preference number: 4 (lower is better)
Translates to: GPWVSLAAQEDLIEGDKESRCNL*QGPLFS
Trigger: CGAAAAGAGCGGCCCCTGCCAAAGATTGCACCTGCT...CTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCAGGGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGGGCACACCCTGGACTTaGACACCATTGATGTTGATG +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRGTPWT*TPLMLM
Trigger: CATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCC...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp AGTGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCACTGTTCCCTTGGATCTaGGGGACTTGGTACTGGATA +
Preference number: 4 (lower is better)
Translates to: SGVRAAQGSRGHLSIMDPLFPWI*GTWYWI
Trigger: TATCCAGTACCAAGTCCCTCAGATCCAAGGGAACAG...TGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GGCCCCTGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGGTGGGGTTCTGGATTaGAAACACAAACTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: GPWVSLAAQEDLIEGDKEGGVLD*KHKLPS
Trigger: GGAGGGCAGTTTGTGTTTGCAATCCAGAACCCCACC...CTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCAGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTACCACCCGCAGTGCCTaGTGGGGGATCTGGACCACC +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSTTRSA*WGIWTT
Trigger: GGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGT...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGTGGCAGAGGCAGCTTaGACCACCCGCAGTGCCTGC +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSVAEAA*TTRSAC
Trigger: GCAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCAC...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGTTTCCAGAAACGTTCTaGACGGTCAGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQFPETF*TVSCCC
Trigger: GCAGCAGCAGCTGACCGTGCAGAACGTTTCTGGAAA...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCTCTCCGGCTAGAGCCTaGTCCATCTGCAGCTGGATC +
Preference number: 4 (lower is better)
Translates to: KGPHASWVRTSHWAWPVSSPARA*SICSWI
Trigger: GATCCAGCTGCAGATGGAGCAGGCTCTAGCCGGAGA...GGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGTGCACCTGGATGGTCTaGGAACTGTTCCCTTGGATC +
Preference number: 4 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQCTWMV*ELFPWI
Trigger: GATCCAAGGGAACAGTTCCCAGACCATCCAGGTGCA...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGGCACGGTGGGGGAGGGGGCATGGCACAATGGGACTCCGGCAGTGTTGAGGAATGCACCTGGATGGTCTaGGAACTGTTCCCTTGGATC +
Preference number: 4 (lower is better)
Translates to: RHGGGGGMAQWDSGSVEECTWMV*ELFPWI
Trigger: GATCCAAGGGAACAGTTCCCAGACCATCCAGGTGCA...TTCCTCAACACTGCCGGAGTCCCATTGTGCCATGCCCCCTCCCCCACCGTGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCATGCACCTGGATGGTCTaGGAACTGTTCCCTTGGATC +
Preference number: 4 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPCTWMV*ELFPWI
Trigger: GATCCAAGGGAACAGTTCCCAGACCATCCAGGTGCA...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACGTGTGCAGGCGGACGTaGGCCCGGAGCAAGGATGTC +
Preference number: 4 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHVCRRT*ARSKDV
Trigger: GACATCCTTGCTCCGGGCCCACGTCCGCCTGCACAC...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp CCTTTCATAGGAAGTTGGAATGTTTGGAGGAGAGCCGTGGCAGGGCTGGGCAGTGTGTGCAGGCGGACGTaGGCCCGGAGCAAGGATGTC +
Preference number: 4 (lower is better)
Translates to: PFIGSWNVWRRAVAGLGSVCRRT*ARSKDV
Trigger: GACATCCTTGCTCCGGGCCCACGTCCGCCTGCACAC...ACTGCCCAGCCCTGCCACGGCTCTCCTCCAAACATTCCAACTTCCTATGAAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
3UTR CAA 72 bp AGGGCAGGTCCTCGGCGTCTGACCTTTCATAGGAAGTaGGAATGTTTGGAGGAGAGCCGTGGCAGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: RAGPRRLTFHRK*ECLEESRGRAG
Trigger: CCCAGCCCTGCCACGGCTCTCCTCCAAACATTCCAACTTCCTATGAAAGGTCAGACGCCGAGGACCTGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGCTGGATACTTGCATTTaGTCGGCTCCCTTTGTTGAT +
Preference number: 4 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRLDTCI*SAPFVD
Trigger: ATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAG...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGCTGTTCCCTTGGATCTaGGGGACTTGGTACTGGATA +
Preference number: 4 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQLFPWI*GTWYWI
Trigger: TATCCAGTACCAAGTCCCTCAGATCCAAGGGAACAG...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp TGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGTGTTTCCTGCCTGGATaGTGTTGTCTGCCGTGGTCT +
Preference number: 4 (lower is better)
Translates to: WVSLAAQEDLIEGDKEARCFLPG*CCLPWS
Trigger: AGACCACGGCAGACAACATCATCCAGGCAGGAAACA...CCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCACTCATGAAGCGCTTCTaGCATTGGGCACACTCAAAG +
Preference number: 4 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPLMKRF*HWAHSK
Trigger: CTTTGAGTGTGCCCAATGTCAGAAGCGCTTCATGAG...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp TCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGTGGGGGCTCATGAAGCGCTTCTaGCATTGGGCACACTCAAAG +
Preference number: 4 (lower is better)
Translates to: SLAAQEDLIEGDKEARWGLMKRF*HWAHSK
Trigger: CTTTGAGTGTGCCCAATGTCAGAAGCGCTTCATGAG...CCCCCACCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGGCACCACCTGGACTTaGTGGACCACAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGGTTWT*WTTAGW
Trigger: CCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCC...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGCACCACCTGGACTTaGTGGACCACAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTGTTWT*WTTAGW
Trigger: CCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCC...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGATGCAGTTGGGACACGTaGAGGCCATGCGCCGCCGTT +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGCSWDT*RPCAAV
Trigger: AACGGCGGCGCATGGCCTGCACGTGTCCCAACTGCA...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp CGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCATGGCCTGGGCAGTCTTCTCCCCATCCTTaGAGTTGGGACACGTGCAGG +
Preference number: 4 (lower is better)
Translates to: RPGLERLIGHGQCPWPGQSSPHP*SWDTCR
Trigger: CCTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGA...CTGCCCAGGCCATGGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp ATAAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCAGGGCCAAGGGAGATaGCTGGGAGTCCTGGGTAGT +
Preference number: 4 (lower is better)
Translates to: IRVPTRPGLERLIGHGQCQGQGR*LGVLGS
Trigger: ACTACCCAGGACTCCCAGCCATCTCCCTTGGCCCTG...ACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCATGCAGCTTCAACAGCTaGGGGGCCAATTTTGCTACA +
Preference number: 4 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPCSFNS*GANFAT
Trigger: TGTAGCAAAATTGGCCCCCCAGCTGTTGAAGCTGCA...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGGCACGGTGGGGGAGGGGGCATGGCACAATGGGACTCCGGCAGTGTTGAGGAATGCAGCTTCAACAGCTaGGGGGCCAATTTTGCTACA +
Preference number: 4 (lower is better)
Translates to: RHGGGGGMAQWDSGSVEECSFNS*GANFAT
Trigger: TGTAGCAAAATTGGCCCCCCAGCTGTTGAAGCTGCA...TTCCTCAACACTGCCGGAGTCCCATTGTGCCATGCCCCCTCCCCCACCGTGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCGTGCCTGGGATGACCTaGATCTGGTTGGTGAGACTG +
Preference number: 4 (lower is better)
Translates to: KGPHASWVRTSHWAWPVSVPGMT*IWLVRL
Trigger: CAGTCTCACCAACCAGATCCAGGTCATCCCAGGCAC...GGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp CGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCATGGCCTGGGCAGCTTCTGGACAGGAGCTaGCTTGATGGGGACAGGCTT +
Preference number: 4 (lower is better)
Translates to: RPGLERLIGHGQCPWPGQLLDRS*LDGDRL
Trigger: AAGCCTGTCCCCATCAAGCCAGCTCCTGTCCAGAAG...CTGCCCAGGCCATGGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAACCACCTGGACTTGCTaGACCACAGCTGGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGTTWTC*TTAGWP
Trigger: GGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGT...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGCCTGCTGGGGGATCTaGACCACCTGCTGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSACWGI*TTCCCS
Trigger: TGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGC...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTATGGTCTGCATGGCCTaGGCAGCTGCTGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSMVCMA*AAAASC
Trigger: ACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCAT...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAATGGTCTGCATGGCCTaGGCAGCTGCTGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTMVCMA*AAAASC
Trigger: ACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCAT...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTACGTTGGCCCCGCTCTaGACAGGGGTGGTAGTCGTA +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSTLAPL*TGVVVV
Trigger: TACGACTACCACCCCTGTGCAGAGCGGGGCCAACGT...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGAGCACCGTCTCCACCTaGTCAGCCACAGCTACGGAT +
Preference number: 4 (lower is better)
Translates to: GEHRNRVPLCRDTATEQESTVST*SATATD
Trigger: ATCCGTAGCTGTGGCTGAGCAGGTGGAGACGGTGCT...CTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGCAGCAGGTTGTTTCCTaGCTGGATGATGTTGTCTGC +
Preference number: 4 (lower is better)
Translates to: WVSLAAQEDLIEGDKEARQQVVS*LDDVVC
Trigger: GCAGACAACATCATCCAGGCAGGAAACAACCTGCTG...CCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAATCTGGACCACCTGCTaGTGCTCAGCCTTGGGTGGC +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGIWTTC*CSALGG
Trigger: GCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGAT...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACGGGATCTGGACCACCTaGTGCTGCTCAGCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHGIWTT*CCSALG
Trigger: ACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCC...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGATGCTCCCAGCAGGTaGAATCTTTGGCAGGGGCCG +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGDAPSR*NLWQGP
Trigger: CGGCCCCTGCCAAAGATTGCACCTGCTGGGAGCATC...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACGATGGCTGGGAGTCCTaGGTAGTAGCAGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHDGWES*VVAAAG
Trigger: GCCTGCTGCTGCTACTACCCAGGACTCCCAGCCATC...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACCAGGGCCAAGGGAGATaGCTGGGAGTCCTGGGTAGT +
Preference number: 4 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHQGQGR*LGVLGS
Trigger: ACTACCCAGGACTCCCAGCCATCTCCCTTGGCCCTG...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTCTGCTCAGCCTTGGGTaGCACCACCTGGACTTGCTG +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSLLSLG*HHLDLL
Trigger: CAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAG...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGCTGCTGCTCAGCCTTaGGTGGCACCACCTGGACTT +
Preference number: 4 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTAAAQP*VAPPGL
Trigger: AAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGC...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp CCTTTCATAGGAAGTTGGAATGTTTGGAGGAGAGCCGTGGCAGGGCTGGGCAGTGGTTGCAGCTGTTGCTaGGGGGCTGTCCTGGACAAG +
Preference number: 4 (lower is better)
Translates to: PFIGSWNVWRRAVAGLGSGCSCC*GAVLDK
Trigger: CTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAACC...ACTGCCCAGCCCTGCCACGGCTCTCCTCCAAACATTCCAACTTCCTATGAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACACCCCATCCTTGCAGTTaGGACACGTGCAGGCCATGC +
Preference number: 4 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTPHPCS*DTCRPC
Trigger: GCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGG...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAATGTTGACGGGGTGGTaGTGGCTTGGTTGGTGCCTG +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGMLTGW*WLGWCL
Trigger: CAGGCACCAACCAAGCCATCACCACCCCGTCAACAT...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp GGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGAGCTACGGATGGCTGTaGCACAGGGAGGCTCTTCTT +
Preference number: 4 (lower is better)
Translates to: GEHRNRVPLCRDTATEQESYGWL*HREALL
Trigger: AAGAAGAGCCTCCCTGTGTCACAGCCATCCGTAGCT...CTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTAGCAGGAGGTGTCACTaGAGCTTCAACAGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSSRRCH*SFNSWG
Trigger: CCCCCAGCTGTTGAAGCTGCAGTGACACCTCCTGCT...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAAGCACCGTCTCCACCTaGTCAGCCACAGCTACGGAT +
Preference number: 4 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTSTVST*SATATD
Trigger: ATCCGTAGCTGTGGCTGAGCAGGTGGAGACGGTGCT...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAATGGGGAGCTCGGAGTaGAGGGCTGTTACAGGTGAC +
Preference number: 4 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTMGSSE*RAVTGD
Trigger: GTCACCTGTAACAGCCCTGCACTCCGAGCTCCCCAT...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACTCTCCGGCTAGAGCCTaGTCCATCTGCAGCTGGATC +
Preference number: 4 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHSPARA*SICSWI
Trigger: GATCCAGCTGCAGATGGAGCAGGCTCTAGCCGGAGA...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGACACGTGCAGGCCATaGGCCGCCGTTTCTCCCCAG +
Preference number: 4 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLDTCRP*AAVSPQ
Trigger: CTGGGGAGAAACGGCGGCGCATGGCCTGCACGTGTC...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACGGGATGTGGCACACGTaGTTCTTCTTGCCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHGMWHT*FFLPCS
Trigger: GGAGCAGGGCAAGAAGAAGCACGTGTGCCACATCCC...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGCCAAGGGAGATGGCTaGGAGTCCTGGGTAGTAGCA +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGAKGDG*ESWVVA
Trigger: TGCTACTACCCAGGACTCCCAGCCATCTCCCTTGGC...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAATGGACCACAGCTGGCTaGCCCCCGCCAGGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLEWTTAG*PPPGLW
Trigger: CCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCA...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp ATAAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTAGCAGGTGCAATCTTTaGCAGGGGCCGCTCTTTTCG +
Preference number: 4 (lower is better)
Translates to: IRVPTRPGLERLIGHGQCSRCNL*QGPLFS
Trigger: CGAAAAGAGCGGCCCCTGCCAAAGATTGCACCTGCT...ACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGATATTCTTGCAGGGACTaGGAGGGAGAGGAGCGGGTT +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGYSCRD*EGEERV
Trigger: AACCCGCTCCTCTCCCTCTCAGTCCCTGCAAGAATA...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGTTGCACCACCCGCAGTaGCTGCTGGGGGATCTGGAC +
Preference number: 4 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLLHHPQ*LLGDLD
Trigger: GTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAA...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTTCTTCTCCCCATCCTTaGAGTTGGGACACGTGCAGG +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSSSPHP*SWDTCR
Trigger: CCTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGA...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp CCTTTCATAGGAAGTTGGAATGTTTGGAGGAGAGCCGTGGCAGGGCTGGGCAGTTCTTCTCCCCATCCTTaGAGTTGGGACACGTGCAGG +
Preference number: 4 (lower is better)
Translates to: PFIGSWNVWRRAVAGLGSSSPHP*SWDTCR
Trigger: CCTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGA...ACTGCCCAGCCCTGCCACGGCTCTCCTCCAAACATTCCAACTTCCTATGAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGTGCCTGGGATGACCTaGATCTGGTTGGTGAGACTG +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSVPGMT*IWLVRL
Trigger: CAGTCTCACCAACCAGATCCAGGTCATCCCAGGCAC...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACGTGCCTGGGATGACCTaGATCTGGTTGGTGAGACTG +
Preference number: 4 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHVPGMT*IWLVRL
Trigger: CAGTCTCACCAACCAGATCCAGGTCATCCCAGGCAC...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACGGCTTGGTTGGTGCCTaGGATGACCTGGATCTGGTT +
Preference number: 4 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHGLVGA*DDLDLV
Trigger: AACCAGATCCAGGTCATCCCAGGCACCAACCAAGCC...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGCAGGTGCAATCTTTaGCAGGGGCCGCTCTTTTCG +
Preference number: 4 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHSRCNL*QGPLFS
Trigger: CGAAAAGAGCGGCCCCTGCCAAAGATTGCACCTGCT...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp ATAAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTGTGACAGGCACACCCTaGACTTGGACACCATTGATG +
Preference number: 4 (lower is better)
Translates to: IRVPTRPGLERLIGHGQCVTGTP*TWTPLM
Trigger: CATCAATGGTGTCCAAGTCCAGGGTGTGCCTGTCAC...ACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp CGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCATGGCCTGGGCAGCTGGATACTTGCATTTaGTCGGCTCCCTTTGTTGAT +
Preference number: 4 (lower is better)
Translates to: RPGLERLIGHGQCPWPGQLDTCI*SAPFVD
Trigger: ATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAG...CTGCCCAGGCCATGGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGATGTTTCCTGCCTGGATaGTGTTGTCTGCCGTGGTCT +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGCFLPG*CCLPWS
Trigger: AGACCACGGCAGACAACATCATCCAGGCAGGAAACA...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTTGTTTCCTGCCTGGATaGTGTTGTCTGCCGTGGTCT +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSCFLPG*CCLPWS
Trigger: AGACCACGGCAGACAACATCATCCAGGCAGGAAACA...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGGGATCTGGACCACCTaGTGCTGCTCAGCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLGIWTT*CCSALG
Trigger: ACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCC...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAGTGGCAGAGGCAGCTTaGACCACCCGCAGTGCCTGC +
Preference number: 4 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLEVAEAA*TTRSAC
Trigger: GCAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCAC...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACATTTCCAGAAACGTTCTaGACGGTCAGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTFPETF*TVSCCC
Trigger: GCAGCAGCAGCTGACCGTGCAGAACGTTTCTGGAAA...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGGTCGTACTTGACTTCTaGACAGGAGCTGGCTTGATG +
Preference number: 4 (lower is better)
Translates to: GEHRNRVPLCRDTATEQEVVLDF*TGAGLM
Trigger: CATCAAGCCAGCTCCTGTCCAGAAGTCAAGTACGAC...CTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp ATAAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTGGCACACCCTGGACTTaGACACCATTGATGTTGATG +
Preference number: 4 (lower is better)
Translates to: IRVPTRPGLERLIGHGQCGTPWT*TPLMLM
Trigger: CATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCC...ACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGTGACAGGCACACCCTaGACTTGGACACCATTGATG +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSVTGTP*TWTPLM
Trigger: CATCAATGGTGTCCAAGTCCAGGGTGTGCCTGTCAC...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTCTGTTCCCTTGGATCTaGGGGACTTGGTACTGGATA +
Preference number: 4 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSLFPWI*GTWYWI
Trigger: TATCCAGTACCAAGTCCCTCAGATCCAAGGGAACAG...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACACTGGATGATGTTGTCTaGCGTGGTCTCTATCAGCAC +
Preference number: 4 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTLDDVV*RGLYQH
Trigger: GTGCTGATAGAGACCACGGCAGACAACATCATCCAG...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGACTGGATGATGTTGTCTaGCGTGGTCTCTATCAGCAC +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGLDDVV*RGLYQH
Trigger: GTGCTGATAGAGACCACGGCAGACAACATCATCCAG...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGACAGCAGGTTGTTTCCTaGCTGGATGATGTTGTCTGC +
Preference number: 4 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGQQVVS*LDDVVC
Trigger: GCAGACAACATCATCCAGGCAGGAAACAACCTGCTG...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACTGCAGCTTCAACAGCTaGGGGGCCAATTTTGCTACA +
Preference number: 4 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHCSFNS*GANFAT
Trigger: TGTAGCAAAATTGGCCCCCCAGCTGTTGAAGCTGCA...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGTATTCTTGCAGGGACTaGGAGGGAGAGGAGCGGGTT +
Preference number: 4 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLYSCRD*EGEERV
Trigger: AACCCGCTCCTCTCCCTCTCAGTCCCTGCAAGAATA...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp TGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAAATGGTCTGCATGGCCTaGGCAGCTGCTGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: WGLTLLLDGVKCMFFLWKMVCMA*AAAASC
Trigger: ACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCAT...TTTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGTGGGCTGCACCTGGATaGTCTGGGAACTGTTCCCTT +
Preference number: 4 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLWAAPG*SGNCSL
Trigger: AAGGGAACAGTTCCCAGACCATCCAGGTGCAGCCCA...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAAGCTGCTGCTCAGCCTTaGGTGGCACCACCTGGACTT +
Preference number: 4 (lower is better)
Translates to: WGLTLLLDGVKCMFFLWKAAAQP*VAPPGL
Trigger: AAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGC...TTTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAACCCCATCCTTGCAGTTaGGACACGTGCAGGCCATGC +
Preference number: 4 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLEPHPCS*DTCRPC
Trigger: GCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGG...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAAGCAGGAGGTGTCACTaGAGCTTCAACAGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLESRRCH*SFNSWG
Trigger: CCCCCAGCTGTTGAAGCTGCAGTGACACCTCCTGCT...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAATGGGGAGCTCGGAGTaGAGGGCTGTTACAGGTGAC +
Preference number: 4 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLEMGSSE*RAVTGD
Trigger: GTCACCTGTAACAGCCCTGCACTCCGAGCTCCCCAT...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGTTTCCAGAAACGTTCTaGACGGTCAGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLFPETF*TVSCCC
Trigger: GCAGCAGCAGCTGACCGTGCAGAACGTTTCTGGAAA...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAGGGATGTGGCACACGTaGTTCTTCTTGCCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLEGMWHT*FFLPCS
Trigger: GGAGCAGGGCAAGAAGAAGCACGTGTGCCACATCCC...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGTGACAGGCACACCCTaGACTTGGACACCATTGATG +
Preference number: 4 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLVTGTP*TWTPLM
Trigger: CATCAATGGTGTCCAAGTCCAGGGTGTGCCTGTCAC...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAAGCTACGGATGGCTGTaGCACAGGGAGGCTCTTCTT +
Preference number: 4 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLESYGWL*HREALL
Trigger: AAGAAGAGCCTCCCTGTGTCACAGCCATCCGTAGCT...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAATGGGCTGCACCTGGATaGTCTGGGAACTGTTCCCTT +
Preference number: 4 (lower is better)
Translates to: WGLTLLLDGVKCMFFLWKWAAPG*SGNCSL
Trigger: AAGGGAACAGTTCCCAGACCATCCAGGTGCAGCCCA...TTTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp TGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAAGGCTTGGTTGGTGCCTaGGATGACCTGGATCTGGTT +
Preference number: 4 (lower is better)
Translates to: WGLTLLLDGVKCMFFLWKGLVGA*DDLDLV
Trigger: AACCAGATCCAGGTCATCCCAGGCACCAACCAAGCC...TTTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGTCGTACTTGACTTCTaGACAGGAGCTGGCTTGATG +
Preference number: 4 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLVVLDF*TGAGLM
Trigger: CATCAAGCCAGCTCCTGTCCAGAAGTCAAGTACGAC...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGGCACACCCTGGACTTaGACACCATTGATGTTGATG +
Preference number: 4 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLGTPWT*TPLMLM
Trigger: CATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCC...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR TCA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAACTCATGAAGCGCTTCTaGCATTGGGCACACTCAAAG +
Preference number: 4 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLELMKRF*HWAHSK
Trigger: CTTTGAGTGTGCCCAATGTCAGAAGCGCTTCATGAG...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR GCA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAACAGCAGGTTGTTTCCTaGCTGGATGATGTTGTCTGC +
Preference number: 4 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLEQQVVS*LDDVVC
Trigger: GCAGACAACATCATCCAGGCAGGAAACAACCTGCTG...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CCA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAGTCGTACTTGACTTCTaGACAGGAGCTGGCTTGATG +
Preference number: 4 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLEVVLDF*TGAGLM
Trigger: CATCAAGCCAGCTCCTGTCCAGAAGTCAAGTACGAC...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 90 bp ACGGTGGGGAGGGTGGCAGAGGCAGCTTGCACCACCCGCAGTGCCTaGTGGGGGATCTGGACCACCTGCTGCTGCTCAGCCTTGGGTGGC +
Preference number: 5 (lower is better)
Translates to: TVGRVAEAACTTRSA*WGIWTTCCCSALGG
Trigger: GCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCACCCTCCCCACCGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 90 bp GCAGTGCCTGCTGGGGGATCTGGACCACCTGCTGCTGCTCAGCCTTaGGTGGCACCACCTGGACTTGCTGGACCACAGCTGGCTGGCCCC +
Preference number: 5 (lower is better)
Translates to: AVPAGGSGPPAAAQP*VAPPGLAGPQLAGP
Trigger: GGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 90 bp GCAGCTTGCACCACCCGCAGTGCCTGCTGGGGGATCTGGACCACCTaGTGCTGCTCAGCCTTGGGTGGCACCACCTGGACTTGCTGGACC +
Preference number: 5 (lower is better)
Translates to: AACTTRSACWGIWTT*CCSALGGTTWTCWT
Trigger: GGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAAGCTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGGTGGCAGAGGCAGCTaGCACCACCCGCAGTGCCTG +
Preference number: 5 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPGGRGS*HHPQCL
Trigger: CAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCACC...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 90 bp TGCACCACCCGCAGTGCCTGCTGGGGGATCTGGACCACCTGCTGCTaGTCAGCCTTGGGTGGCACCACCTGGACTTGCTGGACCACAGCT +
Preference number: 5 (lower is better)
Translates to: CTTRSACWGIWTTCC*SALGGTTWTCWTTA
Trigger: AGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 90 bp GCTTGCACCACCCGCAGTGCCTGCTGGGGGATCTGGACCACCTGCTaGTGCTCAGCCTTGGGTGGCACCACCTGGACTTGCTGGACCACA +
Preference number: 5 (lower is better)
Translates to: ACTTRSACWGIWTTC*CSALGGTTWTCWTT
Trigger: TGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 90 bp CAGACCTCTTCTCCCCATCCTTGCAGTTGGGACACGTGCAGGCCATaGGCCGCCGTTTCTCCCCAGGCTGGGCCTCTCCGGCTAGAGCCT +
Preference number: 5 (lower is better)
Translates to: QTSSPHPCSWDTCRP*AAVSPQAGPLRLEP
Trigger: AGGCTCTAGCCGGAGAGGCCCAGCCTGGGGAGAAACGGCGGCGCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGAGGTCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 90 bp TCAGCCTTGGGTGGCACCACCTGGACTTGCTGGACCACAGCTGGCTaGCCCCCGCCAGGGCTCTGGACGATCAGCAGGTTGTTTCCTGCC +
Preference number: 5 (lower is better)
Translates to: SALGGTTWTCWTTAG*PPPGLWTISRLFPA
Trigger: GGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 90 bp CTGCTCAGCCTTGGGTGGCACCACCTGGACTTGCTGGACCACAGCTaGCTGGCCCCCGCCAGGGCTCTGGACGATCAGCAGGTTGTTTCC +
Preference number: 5 (lower is better)
Translates to: LLSLGWHHLDLLDHS*LAPARALDDQQVVS
Trigger: GGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGGATCGGCTCCCTTTGTaGATCAGGGTGGGGTTCTGG +
Preference number: 5 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRDRLPL*IRVGFW
Trigger: CCAGAACCCCACCCTGATCAACAAAGGGAGCCGATC...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGTGCTGCTGCTCAGCCTaGGGTGGCACCACCTGGACT +
Preference number: 5 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQCCCSA*GGTTWT
Trigger: AGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCA...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGCTGGTGTTCACCAGGTaGTTGAGCGGCAGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQLVFTR*LSGRVS
Trigger: GCTCACCCTGCCGCTCAACAACCTGGTGAACACCAG...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGTGCTGCCCGCCAGTGTaGGTGATGGTGACAGGCACA +
Preference number: 5 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQCCPPV*VMVTGT
Trigger: TGTGCCTGTCACCATCACCAACACTGGCGGGCAGCA...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCATCCCCATCCTTGCAGTaGGGACACGTGCAGGCCATG +
Preference number: 5 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPSPSLQ*GHVQAM
Trigger: CATGGCCTGCACGTGTCCCAACTGCAAGGATGGGGA...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCACACACGTGCTTCTTCTaGCCCTGCTCCCCAGACCTC +
Preference number: 5 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPHTCFF*PCSPDL
Trigger: GAGGTCTGGGGAGCAGGGCAAGAAGAAGCACGTGTG...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 90 bp ACCTGGACTTGCTGGACCACAGCTGGCTGGCCCCCGCCAGGGCTCTaGACGATCAGCAGGTTGTTTCCTGCCTGGATGATGTTGTCTGCC +
Preference number: 5 (lower is better)
Translates to: TWTCWTTAGWPPPGL*TISRLFPAWMMLSA
Trigger: GGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGTGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGGTGGGGTTCTGGATaGCAAACACAAACTGCCCTC +
Preference number: 5 (lower is better)
Translates to: SGVRAAQGSRGHLSIMDPGWGSG*QTQTAL
Trigger: GAGGGCAGTTTGTGTTTGCAATCCAGAACCCCACCC...TGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGGATCGGCTCCCTTTGTaGATCAGGGTGGGGTTCTGG +
Preference number: 5 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQDRLPL*IRVGFW
Trigger: CCAGAACCCCACCCTGATCAACAAAGGGAGCCGATC...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGTGGACGATCAGCAGGTaGTTTCCTGCCTGGATGATG +
Preference number: 5 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRWTISR*FPAWMM
Trigger: CATCATCCAGGCAGGAAACAACCTGCTGATCGTCCA...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCTGCTGCTGCTCAGCCTaGGGTGGCACCACCTGGACT +
Preference number: 5 (lower is better)
Translates to: KGPHASWVRTSHWAWPVSCCCSA*GGTTWT
Trigger: AGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCA...GGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGCACACGTGCTTCTTCTaGCCCTGCTCCCCAGACCTC +
Preference number: 5 (lower is better)
Translates to: WVSLAAQEDLIEGDKEARHTCFF*PCSPDL
Trigger: GAGGTCTGGGGAGCAGGGCAAGAAGAAGCACGTGTG...CCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 90 bp TGGCCCCCGCCAGGGCTCTGGACGATCAGCAGGTTGTTTCCTGCCTaGATGATGTTGTCTGCCGTGGTCTCTATCAGCACCGTCTCCACC +
Preference number: 5 (lower is better)
Translates to: WPPPGLWTISRLFPA*MMLSAVVSISTVST
Trigger: GGTGGAGACGGTGCTGATAGAGACCACGGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp CACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCATGGCCTGGCTGGTGTTCACCAGGTaGTTGAGCGGCAGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: HASWVRTSHWAWPVSMAWLVFTR*LSGRVS
Trigger: GCTCACCCTGCCGCTCAACAACCTGGTGAACACCAG...CCAGGCCATGGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGTGGGGGCCTGCCTGGATGATGTaGTCTGCCGTGGTCTCTATC +
Preference number: 5 (lower is better)
Translates to: SLAAQEDLIEGDKEARWGPAWMM*SAVVSI
Trigger: GATAGAGACCACGGCAGACAACATCATCCAGGCAGG...CCCCCACCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACGGTGGCAGAGGCAGCTaGCACCACCCGCAGTGCCTG +
Preference number: 5 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHGGRGS*HHPQCL
Trigger: CAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCACC...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGGCAGCTGAATGTTTTTaGCTGGTGCCACTCAGATGG +
Preference number: 5 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRAAECF*LVPLRW
Trigger: CCATCTGAGTGGCACCAGCAAAAAACATTCAGCTGC...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAGGAGGCACACCCTGGACTaGGACACCATTGATGTTGAT +
Preference number: 5 (lower is better)
Translates to: WGEGCPGQSWAPVHHGPRRHTLD*DTIDVD
Trigger: ATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCCT...CCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCTCCCCATCCTTGCAGTaGGGACACGTGCAGGCCATG +
Preference number: 5 (lower is better)
Translates to: KGPHASWVRTSHWAWPVSSPSLQ*GHVQAM
Trigger: CATGGCCTGCACGTGTCCCAACTGCAAGGATGGGGA...GGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp CACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCATGGCCTGGTCCCCATCCTTGCAGTaGGGACACGTGCAGGCCATG +
Preference number: 5 (lower is better)
Translates to: HASWVRTSHWAWPVSMAWSPSLQ*GHVQAM
Trigger: CATGGCCTGCACGTGTCCCAACTGCAAGGATGGGGA...CCAGGCCATGGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGCTCTTCTCCCCATCCTaGCAGTTGGGACACGTGCAG +
Preference number: 5 (lower is better)
Translates to: WVSLAAQEDLIEGDKEARLFSPS*QLGHVQ
Trigger: CTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGAG...CCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 90 bp CCCCGCCAGGGCTCTGGACGATCAGCAGGTTGTTTCCTGCCTGGATaGTGTTGTCTGCCGTGGTCTCTATCAGCACCGTCTCCACCTGCT +
Preference number: 5 (lower is better)
Translates to: PRQGSGRSAGCFLPG*CCLPWSLSAPSPPA
Trigger: AGCAGGTGGAGACGGTGCTGATAGAGACCACGGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp CACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCATGGCCTGGATGACCTGGATCTGGTaGGTGAGACTGGGCTGCACC +
Preference number: 5 (lower is better)
Translates to: HASWVRTSHWAWPVSMAWMTWIW*VRLGCT
Trigger: GGTGCAGCCCAGTCTCACCAACCAGATCCAGGTCAT...CCAGGCCATGGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCGCACACTCAAAGCGCTaGTCCCCTGTGTGGGTTCGA +
Preference number: 5 (lower is better)
Translates to: KGPHASWVRTSHWAWPVSAHSKR*SPVWVR
Trigger: TCGAACCCACACAGGGGACAAGCGCTTTGAGTGTGC...GGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp CACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCATGGCCTGGGCACACTCAAAGCGCTaGTCCCCTGTGTGGGTTCGA +
Preference number: 5 (lower is better)
Translates to: HASWVRTSHWAWPVSMAWAHSKR*SPVWVR
Trigger: TCGAACCCACACAGGGGACAAGCGCTTTGAGTGTGC...CCAGGCCATGGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 90 bp GACTTGGACACCATTGATGTTGATGGTCTGCATGGCCTGAGCAGCTaGTGCCAGCTGTGCGGCGTTCAGGCTGATGATGCTCCCAGCAGG +
Preference number: 5 (lower is better)
Translates to: DLDTIDVDGLHGLSS*CQLCGVQADDAPSR
Trigger: CCTGCTGGGAGCATCATCAGCCTGAACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGTGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAATGCTAAAGCTATTCTaGCAGGGACTGAGAGGGAGA +
Preference number: 5 (lower is better)
Translates to: SGVRAAQGSRGHLSIMDPMLKLF*QGLRGR
Trigger: TCTCCCTCTCAGTCCCTGCAAGAATAGCTTTAGCAT...TGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGTGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCACTTGGTACTGGATACTaGCATTTGATCGGCTCCCTT +
Preference number: 5 (lower is better)
Translates to: SGVRAAQGSRGHLSIMDPLGTGY*HLIGSL
Trigger: AAGGGAGCCGATCAAATGCAAGTATCCAGTACCAAG...TGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCCCTGCCTGGATGATGTaGTCTGCCGTGGTCTCTATC +
Preference number: 5 (lower is better)
Translates to: KGPHASWVRTSHWAWPVSPAWMM*SAVVSI
Trigger: GATAGAGACCACGGCAGACAACATCATCCAGGCAGG...GGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGATGGCACCACCTGGACTaGCTGGACCACAGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGWHHLD*LDHSWL
Trigger: CAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCA...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGATGCTGCTGCTCAGCCTaGGGTGGCACCACCTGGACT +
Preference number: 5 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGCCCSA*GGTTWT
Trigger: AGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCA...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGTGGGGTGAGGGCTGCCCAGGGCAGTCGTGGGCACCTGTCCATCATGGACCCAAAACCTGGGTTGGTGTaGGTTCAGTTGTCTGGATCT +
Preference number: 5 (lower is better)
Translates to: SGVRAAQGSRGHLSIMDPKPGLV*VQLSGS
Trigger: AGATCCAGACAACTGAACCAACACCAACCCAGGTTT...TGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGCTGCCCGCCAGTGTaGGTGATGGTGACAGGCACA +
Preference number: 5 (lower is better)
Translates to: GEHRNRVPLCRDTATEQECCPPV*VMVTGT
Trigger: TGTGCCTGTCACCATCACCAACACTGGCGGGCAGCA...CTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 90 bp CTGGACAGGAGCTGGCTTGATGGGGACAGGCTTATGACCAGATGTTaGCGGGGTGGTGATGGCTTGGTTGGTGCCTGGGATGACCTGGAT +
Preference number: 5 (lower is better)
Translates to: LDRSWLDGDRLMTRC*RGGDGLVGAWDDLD
Trigger: ATCCAGGTCATCCCAGGCACCAACCAAGCCATCACCACCCCGTCAACATCTGGTCATAAGCCTGTCCCCATCAAGCCAGCTCCTGTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 90 bp ACACCCTGGACTTGGACACCATTGATGTTGATGGTCTGCATGGCCTaGGCAGCTGCTGCCAGCTGTGCGGCGTTCAGGCTGATGATGCTC +
Preference number: 5 (lower is better)
Translates to: TPWTWTPLMLMVCMA*AAAASCAAFRLMML
Trigger: GAGCATCATCAGCCTGAACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGTCCAGGGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 90 bp TGGATGATGTTGTCTGCCGTGGTCTCTATCAGCACCGTCTCCACCTaGTCAGCCACAGCTACGGATGGCTGTGACACAGGGAGGCTCTTC +
Preference number: 5 (lower is better)
Translates to: WMMLSAVVSISTVST*SATATDGCDTGRLF
Trigger: GAAGAGCCTCCCTGTGTCACAGCCATCCGTAGCTGTGGCTGAGCAGGTGGAGACGGTGCTGATAGAGACCACGGCAGACAACATCATCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp CTTGGGCAGGGGGAGATGAGGGCGTGGCGGGGTCAGGATGGAAGGTGTTCTCAGATGCTAAAGCTATTCTaGCAGGGACTGAGAGGGAGA +
Preference number: 5 (lower is better)
Translates to: LGQGEMRAWRGQDGRCSQMLKLF*QGLRGR
Trigger: TCTCCCTCTCAGTCCCTGCAAGAATAGCTTTAGCAT...CTGAGAACACCTTCCATCCTGACCCCGCCACGCCCTCATCTCCCCCTGCCCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GGCCCCTGGGTGTCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGATGCTAAAGCTATTCTaGCAGGGACTGAGAGGGAGA +
Preference number: 5 (lower is better)
Translates to: GPWVSLAAQEDLIEGDKEMLKLF*QGLRGR
Trigger: TCTCCCTCTCAGTCCCTGCAAGAATAGCTTTAGCAT...CTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGACACCCAGGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCACTTGGTACTGGATACTaGCATTTGATCGGCTCCCTT +
Preference number: 5 (lower is better)
Translates to: VPLCRDTATEQEWGEGCPLGTGY*HLIGSL
Trigger: AAGGGAGCCGATCAAATGCAAGTATCCAGTACCAAG...TGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp ATAAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTATGACCTGGATCTGGTaGGTGAGACTGGGCTGCACC +
Preference number: 5 (lower is better)
Translates to: IRVPTRPGLERLIGHGQCMTWIW*VRLGCT
Trigger: GGTGCAGCCCAGTCTCACCAACCAGATCCAGGTCAT...ACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGTTCACCAGGTTGTaGAGCGGCAGGGTGAGCGTC +
Preference number: 5 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGVFTRL*SGRVSV
Trigger: GACGCTCACCCTGCCGCTCAACAACCTGGTGAACAC...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACCTGGTGTTCACCAGGTaGTTGAGCGGCAGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHLVFTR*LSGRVS
Trigger: GCTCACCCTGCCGCTCAACAACCTGGTGAACACCAG...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp CGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCATGGCCTGGGCAGTGGACGATCAGCAGGTaGTTTCCTGCCTGGATGATG +
Preference number: 5 (lower is better)
Translates to: RPGLERLIGHGQCPWPGQWTISR*FPAWMM
Trigger: CATCATCCAGGCAGGAAACAACCTGCTGATCGTCCA...CTGCCCAGGCCATGGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGAAACCTGGGTTGGTGTaGGTTCAGTTGTCTGGATCT +
Preference number: 5 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQKPGLV*VQLSGS
Trigger: AGATCCAGACAACTGAACCAACACCAACCCAGGTTT...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TCCCTAGCGGCCCAGGAGGACTTAATTGAGGGGGACAAGGAGGCACGGTGGGGGAAACCTGGGTTGGTGTaGGTTCAGTTGTCTGGATCT +
Preference number: 5 (lower is better)
Translates to: SLAAQEDLIEGDKEARWGKPGLV*VQLSGS
Trigger: AGATCCAGACAACTGAACCAACACCAACCCAGGTTT...CCCCCACCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGGCCGCTAGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGTGGACTTGGACACCATaGATGTTGATGGTCTGCATG +
Preference number: 5 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQWTWTP*MLMVCM
Trigger: CATGCAGACCATCAACATCAATGGTGTCCAAGTCCA...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGATGCTGCCCGCCAGTGTaGGTGATGGTGACAGGCACA +
Preference number: 5 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGCCPPV*VMVTGT
Trigger: TGTGCCTGTCACCATCACCAACACTGGCGGGCAGCA...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGGGGTGAGGGCTGCCCAGCCACTGATAGTCAGGTaGTTTCCAGAAACGTTCTGC +
Preference number: 5 (lower is better)
Translates to: SLSAGTQPQNRSGVRAAQPLIVR*FPETFC
Trigger: GCAGAACGTTTCTGGAAACAACCTGACTATCAGTGG...CTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACACACACGTGCTTCTTCTaGCCCTGCTCCCCAGACCTC +
Preference number: 5 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTHTCFF*PCSPDL
Trigger: GAGGTCTGGGGAGCAGGGCAAGAAGAAGCACGTGTG...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 90 bp ATTGATGTTGATGGTCTGCATGGCCTGAGCAGCTGCTGCCAGCTGTaGGGCGTTCAGGCTGATGATGCTCCCAGCAGGTGCAATCTTTGG +
Preference number: 5 (lower is better)
Translates to: IDVDGLHGLSSCCQL*GVQADDAPSRCNLW
Trigger: CCAAAGATTGCACCTGCTGGGAGCATCATCAGCCTGAACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGATCGGCTCCCTTTGTaGATCAGGGTGGGGTTCTGG +
Preference number: 5 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSDRLPL*IRVGFW
Trigger: CCAGAACCCCACCCTGATCAACAAAGGGAGCCGATC...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAATGACCTGGATCTGGTaGGTGAGACTGGGCTGCACC +
Preference number: 5 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTMTWIW*VRLGCT
Trigger: GGTGCAGCCCAGTCTCACCAACCAGATCCAGGTCAT...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACCTCTTCTCCCCATCCTaGCAGTTGGGACACGTGCAG +
Preference number: 5 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHLFSPS*QLGHVQ
Trigger: CTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGAG...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGCACACTCAAAGCGCTaGTCCCCTGTGTGGGTTCGA +
Preference number: 5 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSAHSKR*SPVWVR
Trigger: TCGAACCCACACAGGGGACAAGCGCTTTGAGTGTGC...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp CCTTTCATAGGAAGTTGGAATGTTTGGAGGAGAGCCGTGGCAGGGCTGGGCAGTGGGTGGGGTTCTGGATaGCAAACACAAACTGCCCTC +
Preference number: 5 (lower is better)
Translates to: PFIGSWNVWRRAVAGLGSGWGSG*QTQTAL
Trigger: GAGGGCAGTTTGTGTTTGCAATCCAGAACCCCACCC...ACTGCCCAGCCCTGCCACGGCTCTCCTCCAAACATTCCAACTTCCTATGAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACACCTGCCTGGATGATGTaGTCTGCCGTGGTCTCTATC +
Preference number: 5 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTPAWMM*SAVVSI
Trigger: GATAGAGACCACGGCAGACAACATCATCCAGGCAGG...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAAGGTGGCAGAGGCAGCTaGCACCACCCGCAGTGCCTG +
Preference number: 5 (lower is better)
Translates to: WGLTLLLDGVKCMFFLWKGGRGS*HHPQCL
Trigger: CAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCACC...TTTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCCCACTGATAGTCAGGTaGTTTCCAGAAACGTTCTGC +
Preference number: 5 (lower is better)
Translates to: KGPHASWVRTSHWAWPVSPLIVR*FPETFC
Trigger: GCAGAACGTTTCTGGAAACAACCTGACTATCAGTGG...GGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp ATAAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTGAAGCGCTTCTGACATaGGGCACACTCAAAGCGCTT +
Preference number: 5 (lower is better)
Translates to: IRVPTRPGLERLIGHGQCEALLT*GTLKAL
Trigger: AAGCGCTTTGAGTGTGCCCAATGTCAGAAGCGCTTC...ACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGACTGGGAACTGTTCCCTaGGATCTGAGGGACTTGGTA +
Preference number: 5 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGLGTVP*DLRDLV
Trigger: TACCAAGTCCCTCAGATCCAAGGGAACAGTTCCCAG...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACACTGGGAACTGTTCCCTaGGATCTGAGGGACTTGGTA +
Preference number: 5 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTLGTVP*DLRDLV
Trigger: TACCAAGTCCCTCAGATCCAAGGGAACAGTTCCCAG...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACATGGACGATCAGCAGGTaGTTTCCTGCCTGGATGATG +
Preference number: 5 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTWTISR*FPAWMM
Trigger: CATCATCCAGGCAGGAAACAACCTGCTGATCGTCCA...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGAGGCACACCCTGGACTaGGACACCATTGATGTTGAT +
Preference number: 5 (lower is better)
Translates to: GEHRNRVPLCRDTATEQERHTLD*DTIDVD
Trigger: ATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCCT...CTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGTGAAGCGCTTCTGACATaGGGCACACTCAAAGCGCTT +
Preference number: 5 (lower is better)
Translates to: ENTGTESLSAGTQPQNRSEALLT*GTLKAL
Trigger: AAGCGCTTTGAGTGTGCCCAATGTCAGAAGCGCTTC...ACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp CCTTTCATAGGAAGTTGGAATGTTTGGAGGAGAGCCGTGGCAGGGCTGGGCAGTGAAGCGCTTCTGACATaGGGCACACTCAAAGCGCTT +
Preference number: 5 (lower is better)
Translates to: PFIGSWNVWRRAVAGLGSEALLT*GTLKAL
Trigger: AAGCGCTTTGAGTGTGCCCAATGTCAGAAGCGCTTC...ACTGCCCAGCCCTGCCACGGCTCTCCTCCAAACATTCCAACTTCCTATGAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAATGGCACCACCTGGACTaGCTGGACCACAGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLEWHHLD*LDHSWL
Trigger: CAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCA...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AAGGGTCCCCACGCGTCCTGGGTTAGAACGTCTCATTGGGCATGGCCAGTGTCCTTGGTGTTGGTTCAGTaGTCTGGATCTGAAAGTTCT +
Preference number: 5 (lower is better)
Translates to: KGPHASWVRTSHWAWPVSLVLVQ*SGSESS
Trigger: AGAACTTTCAGATCCAGACAACTGAACCAACACCAA...GGACACTGGCCATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp CCTTTCATAGGAAGTTGGAATGTTTGGAGGAGAGCCGTGGCAGGGCTGGGCAGTGCAGCTGAATGTTTTTaGCTGGTGCCACTCAGATGG +
Preference number: 5 (lower is better)
Translates to: PFIGSWNVWRRAVAGLGSAAECF*LVPLRW
Trigger: CCATCTGAGTGGCACCAGCAAAAAACATTCAGCTGC...ACTGCCCAGCCCTGCCACGGCTCTCCTCCAAACATTCCAACTTCCTATGAAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGAGCCACTGATAGTCAGGTaGTTTCCAGAAACGTTCTGC +
Preference number: 5 (lower is better)
Translates to: GEHRNRVPLCRDTATEQEPLIVR*FPETFC
Trigger: GCAGAACGTTTCTGGAAACAACCTGACTATCAGTGG...CTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGCTCTTCTCCCCATCCTaGCAGTTGGGACACGTGCAG +
Preference number: 5 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLLFSPS*QLGHVQ
Trigger: CTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGAG...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 90 bp TATCAGCACCGTCTCCACCTGCTCAGCCACAGCTACGGATGGCTGTaGCACAGGGAGGCTCTTCTTCCTAGCTTTCTTGTTAGTCTTAGA +
Preference number: 5 (lower is better)
Translates to: YQHRLHLLSHSYGWL*HREALLPSFLVSLR
Trigger: TCTAAGACTAACAAGAAAGCTAGGAAGAAGAGCCTCCCTGTGTCACAGCCATCCGTAGCTGTGGCTGAGCAGGTGGAGACGGTGCTGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACAGGACTTGGTACTGGATACTaGCATTTGATCGGCTCCCTT +
Preference number: 5 (lower is better)
Translates to: RRTQEQSPSLQGHSHRTGLGTGY*HLIGSL
Trigger: AAGGGAGCCGATCAAATGCAAGTATCCAGTACCAAG...TCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACATGGACTTGGACACCATaGATGTTGATGGTCTGCATG +
Preference number: 5 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTWTWTP*MLMVCM
Trigger: CATGCAGACCATCAACATCAATGGTGTCCAAGTCCA...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 90 bp GAGGGACTTGGTACTGGATACTTGCATTTGATCGGCTCCCTTTGTTaGTCAGGGTGGGGTTCTGGATTGCAAACACAAACTGCCCTCCAG +
Preference number: 5 (lower is better)
Translates to: EGLGTGYLHLIGSLC*SGWGSGLQTQTALQ
Trigger: CTGGAGGGCAGTTTGTGTTTGCAATCCAGAACCCCACCCTGATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAGTACCAAGTCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 90 bp CTGTACCTCACCAGAAGGTGTACGGATATAAACCTGGGTTGGTGTTaGTTCAGTTGTCTGGATCTGAAAGTTCTGAGAGGGCTTCTGGGG +
Preference number: 5 (lower is better)
Translates to: LYLTRRCTDINLGWC*FSCLDLKVLRGLLG
Trigger: CCCCAGAAGCCCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATCCGTACACCTTCTGGTGAGGTACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp AGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACAGAACATTGGTGTTGGTTCAGTaGTCTGGATCTGAAAGTTCT +
Preference number: 5 (lower is better)
Translates to: RRRTQEQSPSLQGHSHRTLVLVQ*SGSESS
Trigger: AGAACTTTCAGATCCAGACAACTGAACCAACACCAA...TGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp TTTGGAAGGAGGAGAACACAGGAACAGAGTCCCTCTCTGCAGGGACACAGCCACTTGGTGTTGGTTCAGTaGTCTGGATCTGAAAGTTCT +
Preference number: 5 (lower is better)
Translates to: FGRRRTQEQSPSLQGHSHLVLVQ*SGSESS
Trigger: AGAACTTTCAGATCCAGACAACTGAACCAACACCAA...GTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 90 bp ACTGTTCCCTTGGATCTGAGGGACTTGGTACTGGATACTTGCATTTaGTCGGCTCCCTTTGTTGATCAGGGTGGGGTTCTGGATTGCAAA +
Preference number: 5 (lower is better)
Translates to: TVPLDLRDLVLDTCI*SAPFVDQGGVLDCK
Trigger: TTTGCAATCCAGAACCCCACCCTGATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAGTACCAAGTCCCTCAGATCCAAGGGAACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp GGGATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGTGGACTTGGACACCATaGATGTTGATGGTCTGCATG +
Preference number: 5 (lower is better)
Translates to: GMGAHFAPRRSEMYVFPLWTWTP*MLMVCM
Trigger: CATGCAGACCATCAACATCAATGGTGTCCAAGTCCA...CAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 90 bp GACTGTCTGTACCTCACCAGAAGGTGTACGGATATAAACCTGGGTTaGTGTTGGTTCAGTTGTCTGGATCTGAAAGTTCTGAGAGGGCTT +
Preference number: 5 (lower is better)
Translates to: DCLYLTRRCTDINLG*CWFSCLDLKVLRGL
Trigger: AAGCCCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATCCGTACACCTTCTGGTGAGGTACAGACAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS-3UTR CAA 90 bp ATGGGGGCTCACTTTGCTCCTCGACGGAGTGAAATGTATGTTTTTCCTTTGGAAAGGCACACCCTGGACTaGGACACCATTGATGTTGAT +
Preference number: 5 (lower is better)
Translates to: MGAHFAPRRSEMYVFPLERHTLD*DTIDVD
Trigger: ATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCCT...TTCCAAAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp TGCTGCTGCTCAGCCTTGGGTGGCACCACCTGGACTTaGTGGACCACAGCTGGCTGGCCCCCGCCAGGGCTC +
Preference number: 6 (lower is better)
Translates to: CCCSALGGTTWT*WTTAGWPPPGL
Trigger: GAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp GGGGAGGGTGGCAGAGGCAGCTTGCACCACCCGCAGTaGCTGCTGGGGGATCTGGACCACCTGCTGCTGCTC +
Preference number: 6 (lower is better)
Translates to: GEGGRGSLHHPQ*LLGDLDHLLLL
Trigger: GAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCACCCTCCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 72 bp TGCTGCTCAGCCTTGGGTGGCACCACCTGGACTTGCTaGACCACAGCTGGCTGGCCCCCGCCAGGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: CCSALGGTTWTC*TTAGWPPPGLW
Trigger: CCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp AGGGTGGCAGAGGCAGCTTGCACCACCCGCAGTGCCTaGTGGGGGATCTGGACCACCTGCTGCTGCTCAGCC +
Preference number: 6 (lower is better)
Translates to: RVAEAACTTRSA*WGIWTTCCCSA
Trigger: GGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCACCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp TCTCCCCATCCTTGCAGTTGGGACACGTGCAGGCCATaGGCCGCCGTTTCTCCCCAGGCTGGGCCTCTCCGG +
Preference number: 6 (lower is better)
Translates to: SPHPCSWDTCRP*AAVSPQAGPLR
Trigger: CCGGAGAGGCCCAGCCTGGGGAGAAACGGCGGCGCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGGAGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 72 bp GGTGGCACCACCTGGACTTGCTGGACCACAGCTGGCTaGCCCCCGCCAGGGCTCTGGACGATCAGCAGGTTG +
Preference number: 6 (lower is better)
Translates to: GGTTWTCWTTAG*PPPGLWTISRL
Trigger: CAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 72 bp CTTGGGTGGCACCACCTGGACTTGCTGGACCACAGCTaGCTGGCCCCCGCCAGGGCTCTGGACGATCAGCAG +
Preference number: 6 (lower is better)
Translates to: LGWHHLDLLDHS*LAPARALDDQQ
Trigger: CTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp ACCCGCAGTGCCTGCTGGGGGATCTGGACCACCTGCTaGTGCTCAGCCTTGGGTGGCACCACCTGGACTTGC +
Preference number: 6 (lower is better)
Translates to: TRSACWGIWTTC*CSALGGTTWTC
Trigger: GCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp ACCACCCGCAGTGCCTGCTGGGGGATCTGGACCACCTaGTGCTGCTCAGCCTTGGGTGGCACCACCTGGACT +
Preference number: 6 (lower is better)
Translates to: TTRSACWGIWTT*CCSALGGTTWT
Trigger: AGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp CAGACCTCTTCTCCCCATCCTTGCAGTTGGGACACGTaGAGGCCATGCGCCGCCGTTTCTCCCCAGGCTGGG +
Preference number: 6 (lower is better)
Translates to: QTSSPHPCSWDT*RPCAAVSPQAG
Trigger: CCCAGCCTGGGGAGAAACGGCGGCGCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGAGGTCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 72 bp GCTGGGGGATCTGGACCACCTGCTGCTGCTCAGCCTTaGGTGGCACCACCTGGACTTGCTGGACCACAGCTG +
Preference number: 6 (lower is better)
Translates to: AGGSGPPAAAQP*VAPPGLAGPQL
Trigger: CAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 72 bp CCTGCTCCCCAGACCTCTTCTCCCCATCCTTGCAGTTaGGACACGTGCAGGCCATGCGCCGCCGTTTCTCCC +
Preference number: 6 (lower is better)
Translates to: PAPQTSSPHPCS*DTCRPCAAVSP
Trigger: GGGAGAAACGGCGGCGCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGAGGTCTGGGGAGCAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp GATGGTCTGCATGGCCTGAGCAGCTGCTGCCAGCTGTaGGGCGTTCAGGCTGATGATGCTCCCAGCAGGTGC +
Preference number: 6 (lower is better)
Translates to: DGLHGLSSCCQL*GVQADDAPSRC
Trigger: GCACCTGCTGGGAGCATCATCAGCCTGAACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 72 bp TGCTGGACCACAGCTGGCTGGCCCCCGCCAGGGCTCTaGACGATCAGCAGGTTGTTTCCTGCCTGGATGATG +
Preference number: 6 (lower is better)
Translates to: CWTTAGWPPPGL*TISRLFPAWMM
Trigger: CATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 72 bp GGCTGGCCCCCGCCAGGGCTCTGGACGATCAGCAGGTaGTTTCCTGCCTGGATGATGTTGTCTGCCGTGGTC +
Preference number: 6 (lower is better)
Translates to: GWPPPGLWTISR*FPAWMMLSAVV
Trigger: GACCACGGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 90 bp ACCACAGCTGGCTGGCCCCCGCCAGGGCTCTGGACGATCAGCAGGTaGTTTCCTGCCTGGATGATGTTGTCTGCCGTGGTCTCTATCAGC +
Preference number: 6 (lower is better)
Translates to: TTAGWPPPGLWTISR*FPAWMMLSAVVSIS
Trigger: GCTGATAGAGACCACGGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 72 bp TTCACCAGGTTGTTGAGCGGCAGGGTGAGCGTCATGTaGCTACCCCCGCCTGTCAGCTTCACCACGTTGGCC +
Preference number: 6 (lower is better)
Translates to: FTRLLSGRVSVM*LPPPVSFTTLA
Trigger: GGCCAACGTGGTGAAGCTGACAGGCGGGGGTAGCAACATGACGCTCACCCTGCCGCTCAACAACCTGGTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp TTGTCTGCCGTGGTCTCTATCAGCACCGTCTCCACCTaGTCAGCCACAGCTACGGATGGCTGTGACACAGGG +
Preference number: 6 (lower is better)
Translates to: LSAVVSISTVST*SATATDGCDTG
Trigger: CCCTGTGTCACAGCCATCCGTAGCTGTGGCTGAGCAGGTGGAGACGGTGCTGATAGAGACCACGGCAGACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 90 bp CCAGGGCTCTGGACGATCAGCAGGTTGTTTCCTGCCTGGATGATGTaGTCTGCCGTGGTCTCTATCAGCACCGTCTCCACCTGCTCAGCC +
Preference number: 6 (lower is better)
Translates to: PGLWTISRLFPAWMM*SAVVSISTVSTCSA
Trigger: GGCTGAGCAGGTGGAGACGGTGCTGATAGAGACCACGGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 90 bp CTGCTGCCCGCCAGTGTTGGTGATGGTGACAGGCACACCCTGGACTaGGACACCATTGATGTTGATGGTCTGCATGGCCTGAGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: LLPASVGDGDRHTLD*DTIDVDGLHGLSSC
Trigger: GCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCCTGTCACCATCACCAACACTGGCGGGCAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 72 bp ACTTGGACACCATTGATGTTGATGGTCTGCATGGCCTaGGCAGCTGCTGCCAGCTGTGCGGCGTTCAGGCTG +
Preference number: 6 (lower is better)
Translates to: TWTPLMLMVCMA*AAAASCAAFRL
Trigger: CAGCCTGAACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp CTGTGCGGCGTTCAGGCTGATGATGCTCCCAGCAGGTaGAATCTTTGGCAGGGGCCGCTCTTTTCGGAGAAT +
Preference number: 6 (lower is better)
Translates to: LCGVQADDAPSR*NLWQGPLFSEN
Trigger: ATTCTCCGAAAAGAGCGGCCCCTGCCAAAGATTGCACCTGCTGGGAGCATCATCAGCCTGAACGCCGCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 72 bp AGCTGGCTTGATGGGGACAGGCTTATGACCAGATGTTaGCGGGGTGGTGATGGCTTGGTTGGTGCCTGGGAT +
Preference number: 6 (lower is better)
Translates to: SWLDGDRLMTRC*RGGDGLVGAWD
Trigger: ATCCCAGGCACCAACCAAGCCATCACCACCCCGTCAACATCTGGTCATAAGCCTGTCCCCATCAAGCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp ACCATTGATGTTGATGGTCTGCATGGCCTGAGCAGCTaGTGCCAGCTGTGCGGCGTTCAGGCTGATGATGCT +
Preference number: 6 (lower is better)
Translates to: TIDVDGLHGLSS*CQLCGVQADDA
Trigger: AGCATCATCAGCCTGAACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp AGGTTGTTTCCAGAAACGTTCTGCACGGTCAGCTGCTaGTGCCCGCCAGTGTTGGTGATGGTGACAGGCACA +
Preference number: 6 (lower is better)
Translates to: RLFPETFCTVSC*CPPVLVMVTGT
Trigger: TGTGCCTGTCACCATCACCAACACTGGCGGGCAGCAGCAGCTGACCGTGCAGAACGTTTCTGGAAACAACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp AGCCCACTGATAGTCAGGTTGTTTCCAGAAACGTTCTaGACGGTCAGCTGCTGCTGCCCGCCAGTGTTGGTG +
Preference number: 6 (lower is better)
Translates to: SPLIVRLFPETF*TVSCCCPPVLV
Trigger: CACCAACACTGGCGGGCAGCAGCAGCTGACCGTGCAGAACGTTTCTGGAAACAACCTGACTATCAGTGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 72 bp CCAGGGCTCTGGACGATCAGCAGGTTGTTTCCTGCCTaGATGATGTTGTCTGCCGTGGTCTCTATCAGCACC +
Preference number: 6 (lower is better)
Translates to: PGLWTISRLFPA*MMLSAVVSIST
Trigger: GGTGCTGATAGAGACCACGGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 72 bp GGCTCTGGACGATCAGCAGGTTGTTTCCTGCCTGGATaGTGTTGTCTGCCGTGGTCTCTATCAGCACCGTCT +
Preference number: 6 (lower is better)
Translates to: GSGRSAGCFLPG*CCLPWSLSAPS
Trigger: AGACGGTGCTGATAGAGACCACGGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 72 bp TGGACGATCAGCAGGTTGTTTCCTGCCTGGATGATGTaGTCTGCCGTGGTCTCTATCAGCACCGTCTCCACC +
Preference number: 6 (lower is better)
Translates to: WTISRLFPAWMM*SAVVSISTVST
Trigger: GGTGGAGACGGTGCTGATAGAGACCACGGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 72 bp GCCAGTGTTGGTGATGGTGACAGGCACACCCTGGACTaGGACACCATTGATGTTGATGGTCTGCATGGCCTG +
Preference number: 6 (lower is better)
Translates to: ASVGDGDRHTLD*DTIDVDGLHGL
Trigger: CAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCCTGTCACCATCACCAACACTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS GCA 72 bp TCGGCTCCCTTTGTTGATCAGGGTGGGGTTCTGGATTaGAAACACAAACTGCCCTCCAGGGTAGGAGGTACT +
Preference number: 6 (lower is better)
Translates to: SAPFVDQGGVLD*KHKLPSRVGGT
Trigger: AGTACCTCCTACCCTGGAGGGCAGTTTGTGTTTGCAATCCAGAACCCCACCCTGATCAACAAAGGGAGCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 90 bp CACCAGAAGGTGTACGGATATAAACCTGGGTTGGTGTTGGTTCAGTaGTCTGGATCTGAAAGTTCTGAGAGGGCTTCTGGGGGACGGTGG +
Preference number: 6 (lower is better)
Translates to: HQKVYGYKPGLVLVQ*SGSESSERASGGRW
Trigger: CCACCGTCCCCCAGAAGCCCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATCCGTACACCTTCTGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 72 bp TTGGATCTGAGGGACTTGGTACTGGATACTTGCATTTaGTCGGCTCCCTTTGTTGATCAGGGTGGGGTTCTG +
Preference number: 6 (lower is better)
Translates to: LDLRDLVLDTCI*SAPFVDQGGVL
Trigger: CAGAACCCCACCCTGATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAGTACCAAGTCCCTCAGATCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 90 bp TCTGTACCTCACCAGAAGGTGTACGGATATAAACCTGGGTTGGTGTaGGTTCAGTTGTCTGGATCTGAAAGTTCTGAGAGGGCTTCTGGG +
Preference number: 6 (lower is better)
Translates to: SVPHQKVYGYKPGLV*VQLSGSESSERASG
Trigger: CCCAGAAGCCCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATCCGTACACCTTCTGGTGAGGTACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 90 bp GGACTGTCTGTACCTCACCAGAAGGTGTACGGATATAAACCTGGGTaGGTGTTGGTTCAGTTGTCTGGATCTGAAAGTTCTGAGAGGGCT +
Preference number: 6 (lower is better)
Translates to: GLSVPHQKVYGYKPG*VLVQLSGSESSERA
Trigger: AGCCCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATCCGTACACCTTCTGGTGAGGTACAGACAGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 72 bp GTGTACGGATATAAACCTGGGTTGGTGTTGGTTCAGTaGTCTGGATCTGAAAGTTCTGAGAGGGCTTCTGGG +
Preference number: 6 (lower is better)
Translates to: VYGYKPGLVLVQ*SGSESSERASG
Trigger: CCCAGAAGCCCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATCCGTACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS TCA 72 bp GGTACTGGATACTTGCATTTGATCGGCTCCCTTTGTTaGTCAGGGTGGGGTTCTGGATTGCAAACACAAACT +
Preference number: 6 (lower is better)
Translates to: GTGYLHLIGSLC*SGWGSGLQTQT
Trigger: AGTTTGTGTTTGCAATCCAGAACCCCACCCTGATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAGTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 72 bp ACCAGAAGGTGTACGGATATAAACCTGGGTTGGTGTTaGTTCAGTTGTCTGGATCTGAAAGTTCTGAGAGGG +
Preference number: 6 (lower is better)
Translates to: TRRCTDINLGWC*FSCLDLKVLRG
Trigger: CCCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATCCGTACACCTTCTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 72 bp TGGTACTGGATACTTGCATTTGATCGGCTCCCTTTGTaGATCAGGGTGGGGTTCTGGATTGCAAACACAAAC +
Preference number: 6 (lower is better)
Translates to: WYWILAFDRLPL*IRVGFWIANTN
Trigger: GTTTGTGTTTGCAATCCAGAACCCCACCCTGATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAGTACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 72 bp ACTTGGTACTGGATACTTGCATTTGATCGGCTCCCTTaGTTGATCAGGGTGGGGTTCTGGATTGCAAACACA +
Preference number: 6 (lower is better)
Translates to: TWYWILAFDRLP*LIRVGFWIANT
Trigger: TGTGTTTGCAATCCAGAACCCCACCCTGATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAGTACCAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 72 bp CACCAGAAGGTGTACGGATATAAACCTGGGTTGGTGTaGGTTCAGTTGTCTGGATCTGAAAGTTCTGAGAGG +
Preference number: 6 (lower is better)
Translates to: HQKVYGYKPGLV*VQLSGSESSER
Trigger: CCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATCCGTACACCTTCTGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CCA 72 bp TACCTCACCAGAAGGTGTACGGATATAAACCTGGGTTaGTGTTGGTTCAGTTGTCTGGATCTGAAAGTTCTG +
Preference number: 6 (lower is better)
Translates to: YLTRRCTDINLG*CWFSCLDLKVL
Trigger: CAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATCCGTACACCTTCTGGTGAGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8
CDS CAA 72 bp GTACCTCACCAGAAGGTGTACGGATATAAACCTGGGTaGGTGTTGGTTCAGTTGTCTGGATCTGAAAGTTCT +
Preference number: 6 (lower is better)
Translates to: VPHQKVYGYKPG*VLVQLSGSESS
Trigger: AGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATCCGTACACCTTCTGGTGAGGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062652.7
ENSMUST00000107623.8
ENSMUST00000107624.8