Pregenerated sensors for SOX4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076431Ensembl transcript IDs: ENSMUST00000067230.6
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAAAGATTCCTTCGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTTaGTGGGGGTGCAACCAAGTCCGGAAGCTCGTTGGAAGGGTGGGG | + |
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Preference number: 1 (lower is better) Translates to: ERFLRSLEALLGFFS*WGCNQVRKLVGRVG Trigger: CCCCACCCTTCCAACGAGCTTCCGGACTTGGTTGCACCCCCAGCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAGGAATCTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR TCA 90 bp | GTGAGGGAAAGATTCCTTCGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTTGCTCGAGTCCCCAGCCCTaGGAGTGGGGGATGGGAGCG | + |
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Preference number: 2 (lower is better) Translates to: VRERFLRSLEALLGFFSCSSPQP*EWGMGA Trigger: CGCTCCCATCCCCCACTCTCAGGGCTGGGGACTCGA...GCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAGGAATCTTTCCCTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR CAA 90 bp | GGAAAGATTCCTTCGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTaGCTGGGGGTGCAACCAAGTCCGGAAGCTCGTTGGAAGGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: GKIPSVFRSFAWLLF*LGVQPSPEARWKGG Trigger: CCCACCCTTCCAACGAGCTTCCGGACTTGGTTGCACCCCCAGCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAGGAATCTTTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR CAA 90 bp | TTATGGTGCTGGGCTGAACTCTCCTCCCCTTATAAGACCAGGGGGTaGAAAGGTGGAAACCGGTGGCAGGTTAAGGGATACTGTCACTTT | + |
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Preference number: 2 (lower is better) Translates to: LWCWAELSSPYKTRG*KGGNRWQVKGYCHF Trigger: AAAGTGACAGTATCCCTTAACCTGCCACCGGTTTCCACCTTTCAACCCCCTGGTCTTATAAGGGGAGGAGAGTTCAGCCCAGCACCATAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR GCA 90 bp | GTGAGGGAAAGATTCCTTCGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTTGCCCCTCTCTCCTCTCCTaGCTCTTGGCCCACCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: VRERFLRSLEALLGFFSCPSLLS*LLAHLL Trigger: GAGAAGGTGGGCCAAGAGGCAGGAGAGGAGAGAGGG...GCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAGGAATCTTTCCCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR GCA 90 bp | TTTTTAAAGCATTATGGTGCTGGGCTGAACTCTCCTCCCCTTATAAGACCAGGGCTTGGCTTCTTTTCTTaGTGGGGGTGCAACCAAGTC | + |
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Preference number: 2 (lower is better) Translates to: FLKHYGAGLNSPPLIRPGLGFFS*WGCNQV Trigger: GACTTGGTTGCACCCCCAGCAAGAAAAGAAGCCAAG...CCCTGGTCTTATAAGGGGAGGAGAGTTCAGCCCAGCACCATAATGCTTTAAAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR CCA 90 bp | TGCTATCACCATGCCATAGGACTGAAACAATTATATTTAGCGACAAGTAGAAAGCCTGAGAGTGGGGGATaGGAGCGCGGGTCCACTAAC | + |
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Preference number: 2 (lower is better) Translates to: CYHHAIGLKQLYLATSRKPESGG*ERGSTN Trigger: GTTAGTGGACCCGCGCTCCCATCCCCCACTCTCAGG...CTTTCTACTTGTCGCTAAATATAATTGTTTCAGTCCTATGGCATGGTGATAGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR TCA 90 bp | TTTTTAAAGCATTATGGTGCTGGGCTGAACTCTCCTCCCCTTATAAGACCAGGGGGAGAAACCAGGGGCTaGTTTTTCAAACTGTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: FLKHYGAGLNSPPLIRPGGETRG*FFKLCE Trigger: CTCACACAGTTTGAAAAATCAGCCCCTGGTTTCTCC...CCCTGGTCTTATAAGGGGAGGAGAGTTCAGCCCAGCACCATAATGCTTTAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR CCA 90 bp | TGCTATCACCATGCCATAGGACTGAAACAATTATATTTAGCGACAAGTAGAAAGAATACAAAGAGGGGGTaGGTAGGAGATGGGGCACGC | + |
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Preference number: 2 (lower is better) Translates to: CYHHAIGLKQLYLATSRKNTKRG*VGDGAR Trigger: GCGTGCCCCATCTCCTACCCACCCCCTCTTTGTATT...CTTTCTACTTGTCGCTAAATATAATTGTTTCAGTCCTATGGCATGGTGATAGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR TCA 90 bp | ATCTTTAAACACAACAGCTATAAACCTGAACACATATGCTATCACCATGCCATAACTCTAGCCCTTCAGTaGAGGAGACGTAAAATGGCG | + |
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Preference number: 2 (lower is better) Translates to: IFKHNSYKPEHICYHHAITLALQ*RRRKMA Trigger: CGCCATTTTACGTCTCCTTCACTGAAGGGCTAGAGT...TATGGCATGGTGATAGCATATGTGTTCAGGTTTATAGCTGTTGTGTTTAAAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR TCA 90 bp | TGCTATCACCATGCCATAGGACTGAAACAATTATATTTAGCGACAAGTAGAAAGAGTCCAGCACAGATTTaGGTTGCGTTTGAATCCTTT | + |
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Preference number: 2 (lower is better) Translates to: CYHHAIGLKQLYLATSRKSPAQI*VAFESF Trigger: AAAGGATTCAAACGCAACTCAAATCTGTGCTGGACT...CTTTCTACTTGTCGCTAAATATAATTGTTTCAGTCCTATGGCATGGTGATAGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR GCA 90 bp | AGCCACCCTATTATAAAATCAGGAAATCCAAACAGCGATTTACACCGATTAACATCCAGGCCAGCTCTATaGACTTTTTCTTCCTTTTCT | + |
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Preference number: 2 (lower is better) Translates to: SHPIIKSGNPNSDLHRLTSRPAL*TFSSFS Trigger: AGAAAAGGAAGAAAAAGTGCATAGAGCTGGCCTGGA...TGTTAATCGGTGTAAATCGCTGTTTGGATTTCCTGATTTTATAATAGGGTGGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR CCA 90 bp | ATCTTTAAACACAACAGCTATAAACCTGAACACATATGCTATCACCATGCCATATTTAGAAGCTTTGCTTaGCTTCTTTTCTTGCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: IFKHNSYKPEHICYHHAIFRSFA*LLFLLG Trigger: CCCCAGCAAGAAAAGAAGCCAAGCAAAGCTTCTAAA...TATGGCATGGTGATAGCATATGTGTTCAGGTTTATAGCTGTTGTGTTTAAAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR GCA 90 bp | TGCTATCACCATGCCATAGGACTGAAACAATTATATTTAGCGACAAGTAGAAAGATAGACAGGATAACATaGTATATTAACCCCACCAGT | + |
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Preference number: 2 (lower is better) Translates to: CYHHAIGLKQLYLATSRKIDRIT*YINPTS Trigger: ACTGGTGGGGTTAATATAGCATGTTATCCTGTCTAT...CTTTCTACTTGTCGCTAAATATAATTGTTTCAGTCCTATGGCATGGTGATAGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR GCA 72 bp | CGGGAACCCCAACGCCCTCTGTGCTCCGGGTCCTTCTaGATCCCCAACCAGGTTGCTGTGGCTTCCACGAGG | + |
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Preference number: 3 (lower is better) Translates to: REPQRPLCSGSF*IPNQVAVASTR Trigger: CCTCGTGGAAGCCACAGCAACCTGGTTGGGGATGCAGAAGGACCCGGAGCACAGAGGGCGTTGGGGTTCCCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR CAA 90 bp | GGCCCCTGGACCACATCCCACAGTCTCCTGTCCTCCCGCCGGCTCTGGGTAGCCTTTCCCCCTCCTTTCTaGACCATGAGGCAAAATCAA | + |
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Preference number: 3 (lower is better) Translates to: GPWTTSHSLLSSRRLWVAFPPPF*TMRQNQ Trigger: TTGATTTTGCCTCATGGTCAAGAAAGGAGGGGGAAA...GGCTACCCAGAGCCGGCGGGAGGACAGGAGACTGTGGGATGTGGTCCAGGGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR CAA 90 bp | GGCCCCTGGACCACATCCCACAGTCTCCTGTCCTCCCGCCGGCTCTGGGTAGCCTTTAATTCTTTATTTTaGCACAGACCCCAGGCGGAG | + |
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Preference number: 3 (lower is better) Translates to: GPWTTSHSLLSSRRLWVAFNSLF*HRPQAE Trigger: CTCCGCCTGGGGTCTGTGCAAAAATAAAGAATTAAA...GGCTACCCAGAGCCGGCGGGAGGACAGGAGACTGTGGGATGTGGTCCAGGGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR GCA 72 bp | CCCAGCCCGGGACTTCGCCAGCGTGGAGTTTCTCCATaGCAATGCTCCCCTAAGCTCAACACAAATGCCAAA | + |
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Preference number: 3 (lower is better) Translates to: PSPGLRQRGVSP*QCSPKLNTNAK Trigger: TTTGGCATTTGTGTTGAGCTTAGGGGAGCATTGGCATGGAGAAACTCCACGCTGGCGAAGTCCCGGGCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR CAA 90 bp | TTTTTAAAGCATTATGGTGCTGGGCTGAACTCTCCTCCCCTTATAAGACCAGGGCTCCTCTCCTGCCTCTaGGCCCACCTTCTCCCCGGC | + |
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Preference number: 3 (lower is better) Translates to: FLKHYGAGLNSPPLIRPGLLSCL*AHLLPG Trigger: GCCGGGGAGAAGGTGGGCCAAGAGGCAGGAGAGGAG...CCCTGGTCTTATAAGGGGAGGAGAGTTCAGCCCAGCACCATAATGCTTTAAAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR CAA 90 bp | GACTTCGCCAGCGTGGAGTTTCTCCATGCCAATGCTCCCCTAAGCTCAACACAAGCTTGGCTTCTTTTCTaGCTGGGGGTGCAACCAAGT | + |
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Preference number: 3 (lower is better) Translates to: DFASVEFLHANAPLSSTQAWLLF*LGVQPS Trigger: ACTTGGTTGCACCCCCAGCAAGAAAAGAAGCCAAGC...TTGTGTTGAGCTTAGGGGAGCATTGGCATGGAGAAACTCCACGCTGGCGAAGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR CCA 72 bp | CGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTTGCTaGGGGTGCAACCAAGTCCGGAAGCTCGTTGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: RSLEALLGFFSC*GCNQVRKLVGR Trigger: CCTTCCAACGAGCTTCCGGACTTGGTTGCACCCCCAGCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR CAA 90 bp | CCCTTAACGGAACTGCCTCTTAAAAGGCAGGCGTCCTCGTGCCTGTCATGTTATTATAAGACCAGGGGGTaGAAAGGTGGAAACCGGTGG | + |
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Preference number: 3 (lower is better) Translates to: PLTELPLKRQASSCLSCYYKTRG*KGGNRW Trigger: CCACCGGTTTCCACCTTTCAACCCCCTGGTCTTATA...ATAACATGACAGGCACGAGGACGCCTGCCTTTTAAGAGGCAGTTCCGTTAAGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR GCA 72 bp | CTTCGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTTaGTGGGGGTGCAACCAAGTCCGGAAGCTCGTTGGA | + |
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Preference number: 3 (lower is better) Translates to: LRSLEALLGFFS*WGCNQVRKLVG Trigger: TCCAACGAGCTTCCGGACTTGGTTGCACCCCCAGCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR CCA 72 bp | GAGGGAAAGATTCCTTCGGTCTTTAGAAGCTTTGCTTaGCTTCTTTTCTTGCTGGGGGTGCAACCAAGTCCG | + |
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Preference number: 3 (lower is better) Translates to: EGKIPSVFRSFA*LLFLLGVQPSP Trigger: CGGACTTGGTTGCACCCCCAGCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAGGAATCTTTCCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR CAA 90 bp | CCCTTAACGGAACTGCCTCTTAAAAGGCAGGCGTCCTCGTGCCTGTCATGTTATTCTCTTCAAGCAAAATaGGGGAGGAAACTCGAAGTA | + |
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Preference number: 3 (lower is better) Translates to: PLTELPLKRQASSCLSCYSLQAK*GRKLEV Trigger: TACTTCGAGTTTCCTCCCCAATTTTGCTTGAAGAGA...ATAACATGACAGGCACGAGGACGCCTGCCTTTTAAGAGGCAGTTCCGTTAAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR-3UTR CAA 90 bp | ATCTTTAAACACAACAGCTATAAACCTGAACACATATGCTATCACCATGCCATAGCATCCCCAACCAGGTaGCTGTGGCTTCCACGAGGT | + |
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Preference number: 3 (lower is better) Translates to: IFKHNSYKPEHICYHHAIASPTR*LWLPRG Trigger: ACCTCGTGGAAGCCACAGCAACCTGGTTGGGGATGC...TATGGCATGGTGATAGCATATGTGTTCAGGTTTATAGCTGTTGTGTTTAAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR TCA 90 bp | GGCCCCTGGACCACATCCCACAGTCTCCTGTCCTCCCGCCGGCTCTGGGTAGCCCGGGCGACTGCTCCATaGTCTTGCGCCGCTCGATCT | + |
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Preference number: 4 (lower is better) Translates to: GPWTTSHSLLSSRRLWVARATAP*SCAARS Trigger: AGATCGAGCGGCGCAAGATCATGGAGCAGTCGCCCG...GGCTACCCAGAGCCGGCGGGAGGACAGGAGACTGTGGGATGTGGTCCAGGGGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR TCA 90 bp | CCGGGAACCCCAACGCCCTCTGTGCTCCGGGTCCTTCTGCATCCCCAACCAGGTGCGCCGATGAGGAGCTaGAACTGCCCAGGGACATGC | + |
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Preference number: 4 (lower is better) Translates to: PGTPTPSVLRVLLHPQPGAPMRS*NCPGTC Trigger: GCATGTCCCTGGGCAGTTTCAGCTCCTCATCGGCGC...ACCTGGTTGGGGATGCAGAAGGACCCGGAGCACAGAGGGCGTTGGGGTTCCCGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR GCA 90 bp | CCGGGAACCCCAACGCCCTCTGTGCTCCGGGTCCTTCTGCATCCCCAACCAGGTAACTGCCCAGGGACATaGTCTCAAAGTTTGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PGTPTPSVLRVLLHPQPGNCPGT*SQSLSW Trigger: CCAGCTCAAACTTTGAGAGCATGTCCCTGGGCAGTT...ACCTGGTTGGGGATGCAGAAGGACCCGGAGCACAGAGGGCGTTGGGGTTCCCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR CAA 72 bp | CTCTGTGCTCCGGGTCCTTCTGCATCCCCAACCAGGTaGCTGTGGCTTCCACGAGGTCCCCATGTCCATTTC | + |
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Preference number: 4 (lower is better) Translates to: LCAPGPSASPTR*LWLPRGPHVHF Trigger: GAAATGGACATGGGGACCTCGTGGAAGCCACAGCAACCTGGTTGGGGATGCAGAAGGACCCGGAGCACAGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CCA 90 bp | CCCTTAACGGAACTGCCTCTTAAAAGGCAGGCGTCCTCGTGCCTGTCATGTTATGGTGTTTGGCTGGGGTaGCCAGCGCACTGGACGGCG | + |
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Preference number: 4 (lower is better) Translates to: PLTELPLKRQASSCLSCYGVWLG*PAHWTA Trigger: CGCCGTCCAGTGCGCTGGCCACCCCAGCCAAACACC...ATAACATGACAGGCACGAGGACGCCTGCCTTTTAAGAGGCAGTTCCGTTAAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR TCA 90 bp | CCCTTAACGGAACTGCCTCTTAAAAGGCAGGCGTCCTCGTGCCTGTCATGTTATCGTTCATGGGCCGCTTaGTGTGGCCACTGGGCGTCT | + |
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Preference number: 4 (lower is better) Translates to: PLTELPLKRQASSCLSCYRSWAA*CGHWAS Trigger: AGACGCCCAGTGGCCACATCAAGCGGCCCATGAACG...ATAACATGACAGGCACGAGGACGCCTGCCTTTTAAGAGGCAGTTCCGTTAAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR GCA 90 bp | GACTTCGCCAGCGTGGAGTTTCTCCATGCCAATGCTCCCCTAAGCTCAACACAATTGCGCCGCTCGATCTaGGACCACACCATAAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: DFASVEFLHANAPLSSTQLRRSI*DHTIKA Trigger: CGCCTTTATGGTGTGGTCGCAGATCGAGCGGCGCAA...TTGTGTTGAGCTTAGGGGAGCATTGGCATGGAGAAACTCCACGCTGGCGAAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR GCA 90 bp | GCCAAACGCATCACCCCAGAGCCTTCTTTCTGTCTTCATTGCAGAAAAAGAAATTTCCCGCGTGGCCGCTaGTGCCCGCGACCTTGTCGC | + |
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Preference number: 4 (lower is better) Translates to: AKRITPEPSFCLHCRKRNFPRGR*CPRPCR Trigger: GCGACAAGGTCGCGGGCAGCAGCGGCCACGCGGGAA...ATTTCTTTTTCTGCAATGAAGACAGAAAGAAGGCTCTGGGGTGATGCGTTTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR GCA 90 bp | GTGAGGGAAAGATTCCTTCGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTTGCGCTTGCCGACCGAGCTaGCCGCCACCTTGGGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: VRERFLRSLEALLGFFSCACRPS*PPPWGH Trigger: GTGGCCCCAAGGTGGCGGGCAGCTCGGTCGGCAAGC...GCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAGGAATCTTTCCCTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CCA 90 bp | GCCAAACGCATCACCCCAGAGCCTTCTTTCTGTCTTCATTGCAGAAAAAGAAATGCGTCTTGCACCAGCTaGGGTCGTCCGCCTTGCCGC | + |
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Preference number: 4 (lower is better) Translates to: AKRITPEPSFCLHCRKRNASCTS*GRPPCR Trigger: GCGGCAAGGCGGACGACCCCAGCTGGTGCAAGACGC...ATTTCTTTTTCTGCAATGAAGACAGAAAGAAGGCTCTGGGGTGATGCGTTTGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CCA 90 bp | GTGAGGGAAAGATTCCTTCGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTTGCAGGCTGCGCGTAGGCTaGCGTAGCCGCGGTGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: VRERFLRSLEALLGFFSCRLRVG*RSRGGQ Trigger: CTGACCACCGCGGCTACGCCAGCCTACGCGCAGCCT...GCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAGGAATCTTTCCCTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| 3UTR CAA 72 bp | TGGGCTGAACTCTCCTCCCCTTATAAGACCAGGGGGTaGAAAGGTGGAAACCGGTGGCAGGTTAAGGGATAC | + |
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Preference number: 4 (lower is better) Translates to: WAELSSPYKTRG*KGGNRWQVKGY Trigger: GTATCCCTTAACCTGCCACCGGTTTCCACCTTTCAACCCCCTGGTCTTATAAGGGGAGGAGAGTTCAGCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR GCA 90 bp | CCCTTAACGGAACTGCCTCTTAAAAGGCAGGCGTCCTCGTGCCTGTCATGTTATGCAGCTTCCAGCGTTTaGCTAGCCGCTTGGAGATCT | + |
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Preference number: 4 (lower is better) Translates to: PLTELPLKRQASSCLSCYAASSV*LAAWRS Trigger: AGATCTCCAAGCGGCTAGGCAAACGCTGGAAGCTGC...ATAACATGACAGGCACGAGGACGCCTGCCTTTTAAGAGGCAGTTCCGTTAAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR TCA 90 bp | CCCTTAACGGAACTGCCTCTTAAAAGGCAGGCGTCCTCGTGCCTGTCATGTTATTTCGAAGTGGGAGCCTaGGCCGGGTTCGAAGTTAAA | + |
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Preference number: 4 (lower is better) Translates to: PLTELPLKRQASSCLSCYFEVGA*AGFEVK Trigger: TTTAACTTCGAACCCGGCTCAGGCTCCCACTTCGAA...ATAACATGACAGGCACGAGGACGCCTGCCTTTTAAGAGGCAGTTCCGTTAAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR GCA 90 bp | TGCTATCACCATGCCATAGGACTGAAACAATTATATTTAGCGACAAGTAGAAAGAGCGAGGAGGACGCGTaGGAGGGCGCGCTGGACGGG | + |
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Preference number: 4 (lower is better) Translates to: CYHHAIGLKQLYLATSRKSEEDA*EGALDG Trigger: CCCGTCCAGCGCGCCCTCGCACGCGTCCTCCTCGCT...CTTTCTACTTGTCGCTAAATATAATTGTTTCAGTCCTATGGCATGGTGATAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR TCA 90 bp | TTTTTAAAGCATTATGGTGCTGGGCTGAACTCTCCTCCCCTTATAAGACCAGGGGCTCCGCCTCCTGGATaGACGGAATCTTGTCGCTGT | + |
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Preference number: 4 (lower is better) Translates to: FLKHYGAGLNSPPLIRPGAPPPG*TESCRC Trigger: ACAGCGACAAGATTCCGTTCATCCAGGAGGCGGAGC...CCCTGGTCTTATAAGGGGAGGAGAGTTCAGCCCAGCACCATAATGCTTTAAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR GCA 90 bp | AGCCACCCTATTATAAAATCAGGAAATCCAAACAGCGATTTACACCGATTAACAACGATGCAGCCGCCTTaGTGCCGCCCGCCGGGACCA | + |
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Preference number: 4 (lower is better) Translates to: SHPIIKSGNPNSDLHRLTTMQPP*CRPPGP Trigger: TGGTCCCGGCGGGCGGCAGCAAGGCGGCTGCATCGT...TGTTAATCGGTGTAAATCGCTGTTTGGATTTCCTGATTTTATAATAGGGTGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CCA 90 bp | ATCTTTAAACACAACAGCTATAAACCTGAACACATATGCTATCACCATGCCATATGGCTGCTTCCCGCGTaGCCGCTGCTGCCCGCGACC | + |
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Preference number: 4 (lower is better) Translates to: IFKHNSYKPEHICYHHAIWLLPA*PLLPAT Trigger: GGTCGCGGGCAGCAGCGGCCACGCGGGAAGCAGCCA...TATGGCATGGTGATAGCATATGTGTTCAGGTTTATAGCTGTTGTGTTTAAAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CCA 90 bp | GTGAGGGAAAGATTCCTTCGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTTGCCAGGGCAGCTTGCTCTaGAGAGAACGATGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: VRERFLRSLEALLGFFSCQGSLL*RERCSR Trigger: GCGGCTGCATCGTTCTCTCCAGAGCAAGCTGCCCTG...GCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAGGAATCTTTCCCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CCA 90 bp | AGCCACCCTATTATAAAATCAGGAAATCCAAACAGCGATTTACACCGATTAACAGTCGCCCTTCTCCCCTaGCTTGGCTGTGGCCGCCGA | + |
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Preference number: 4 (lower is better) Translates to: SHPIIKSGNPNSDLHRLTVALLP*LGCGRR Trigger: TCGGCGGCCACAGCCAAGCCAGGGGAGAAGGGCGAC...TGTTAATCGGTGTAAATCGCTGTTTGGATTTCCTGATTTTATAATAGGGTGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CCA 90 bp | ATCTTTAAACACAACAGCTATAAACCTGAACACATATGCTATCACCATGCCATACCTTCTCCCCTGGCTTaGCTGTGGCCGCCGATCCCG | + |
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Preference number: 4 (lower is better) Translates to: IFKHNSYKPEHICYHHAIPSPLA*LWPPIP Trigger: CGGGATCGGCGGCCACAGCCAAGCCAGGGGAGAAGG...TATGGCATGGTGATAGCATATGTGTTCAGGTTTATAGCTGTTGTGTTTAAAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CCA 90 bp | ATCTTTAAACACAACAGCTATAAACCTGAACACATATGCTATCACCATGCCATAAGCTGCCCGCCACCTTaGGGCCACAGCTCTTCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: IFKHNSYKPEHICYHHAISCPPP*GHSSSW Trigger: CCAAGAAGAGCTGTGGCCCCAAGGTGGCGGGCAGCT...TATGGCATGGTGATAGCATATGTGTTCAGGTTTATAGCTGTTGTGTTTAAAGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR GCA 90 bp | AGCCACCCTATTATAAAATCAGGAAATCCAAACAGCGATTTACACCGATTAACACGCTCACCTCGGGCGTaGAATAGTCCGGGAATTCGA | + |
|
Preference number: 4 (lower is better) Translates to: SHPIIKSGNPNSDLHRLTRSPRA*NSPGIR Trigger: TCGAATTCCCGGACTATTGCACGCCCGAGGTGAGCG...TGTTAATCGGTGTAAATCGCTGTTTGGATTTCCTGATTTTATAATAGGGTGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CCA 90 bp | TGCTATCACCATGCCATAGGACTGAAACAATTATATTTAGCGACAAGTAGAAAGTTCGTACAACCCCAGTaGATCACTGGGGTCGGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: CYHHAIGLKQLYLATSRKFVQPQ*ITGVGA Trigger: AGCGCCGACCCCAGTGATCCACTGGGGTTGTACGAA...CTTTCTACTTGTCGCTAAATATAATTGTTTCAGTCCTATGGCATGGTGATAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR TCA 90 bp | ATCTTTAAACACAACAGCTATAAACCTGAACACATATGCTATCACCATGCCATACATGCTCTCAAAGTTTaGGCTGGGGTTCAGGTCGAG | + |
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Preference number: 4 (lower is better) Translates to: IFKHNSYKPEHICYHHAIHALKV*AGVQVE Trigger: CTCGACCTGAACCCCAGCTCAAACTTTGAGAGCATG...TATGGCATGGTGATAGCATATGTGTTCAGGTTTATAGCTGTTGTGTTTAAAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CCA 90 bp | ATCTTTAAACACAACAGCTATAAACCTGAACACATATGCTATCACCATGCCATATCTCAAAGTTTGAGCTaGGGTTCAGGTCGAGCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: IFKHNSYKPEHICYHHAISQSLS*GSGRAG Trigger: ACCTGCTCGACCTGAACCCCAGCTCAAACTTTGAGA...TATGGCATGGTGATAGCATATGTGTTCAGGTTTATAGCTGTTGTGTTTAAAGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS GCA 90 bp | TGCCGCCCGTCGACGCGGTGGAGCCAGGCGTCGGGGAGGACGCGATaGCCAGCTCCAGGCCGGCGCCCGAGTCCGAGCTCTCCCCGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: CRPSTRWSQASGRTR*PAPGRRPSPSSPRP Trigger: TGGCCGGGGAGAGCTCGGACTCGGGCGCCGGCCTGGAGCTGGGCATCGCGTCCTCCCCGACGCCTGGCTCCACCGCGTCGACGGGCGGCA 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS TCA 90 bp | GGCGTAGCCGCGGTGGTCAGCGGGCGATCGGCTGGCGGCTGGCGATaGTGCTGCGCTGCTGCGGCCGCTCAGACTCCGGCCATCGGGCGA | + |
|
Preference number: 5 (lower is better) Translates to: GVAAVVSGRSAGGWR*CCAAAAAQTPAIGR Trigger: TCGCCCGATGGCCGGAGTCTGAGCGGCCGCAGCAGCGCAGCATCATCGCCAGCCGCCAGCCGATCGCCCGCTGACCACCGCGGCTACGCC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS GCA 90 bp | GGTCAGCGGGCGATCGGCTGGCGGCTGGCGATGATGCTGCGCTGCTaGGGCCGCTCAGACTCCGGCCATCGGGCGAGCATCCCGGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: GQRAIGWRLAMMLRC*GRSDSGHRASIPGL Trigger: GAGGCCCGGGATGCTCGCCCGATGGCCGGAGTCTGAGCGGCCGCAGCAGCGCAGCATCATCGCCAGCCGCCAGCCGATCGCCCGCTGACC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS GCA 90 bp | GGTGGTCAGCGGGCGATCGGCTGGCGGCTGGCGATGATGCTGCGCTaGTGCGGCCGCTCAGACTCCGGCCATCGGGCGAGCATCCCGGGC | + |
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Preference number: 5 (lower is better) Translates to: GGQRAIGWRLAMMLR*CGRSDSGHRASIPG Trigger: GCCCGGGATGCTCGCCCGATGGCCGGAGTCTGAGCGGCCGCAGCAGCGCAGCATCATCGCCAGCCGCCAGCCGATCGCCCGCTGACCACC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 90 bp | CTGGGGTGGCCAGCGCACTGGACGGCGAGGAGGAGGCGGCCGGAGTaGCCGCACTGGGAGTCCGCACCTTGTAGACGGCCGTGGGCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: LGWPAHWTARRRRPE*PHWESAPCRRPWAP Trigger: GGGAGCCCACGGCCGTCTACAAGGTGCGGACTCCCAGTGCGGCCACTCCGGCCGCCTCCTCCTCGCCGTCCAGTGCGCTGGCCACCCCAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 90 bp | AGGAAGAGGACGAGGAGAGCGAGGAGGACGCGTGCGAGGGCGCGCTaGACGGGGCGGGCGAGGCTGCGCGTAGGCTGGCGTAGCCGCGGT | + |
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Preference number: 5 (lower is better) Translates to: RKRTRRARRTRARAR*TGRARLRVGWRSRG Trigger: ACCGCGGCTACGCCAGCCTACGCGCAGCCTCGCCCGCCCCGTCCAGCGCGCCCTCGCACGCGTCCTCCTCGCTCTCCTCGTCCTCTTCCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 90 bp | CTGCGCGTAGGCTGGCGTAGCCGCGGTGGTCAGCGGGCGATCGGCTaGCGGCTGGCGATGATGCTGCGCTGCTGCGGCCGCTCAGACTCC | + |
|
Preference number: 5 (lower is better) Translates to: LRVGWRSRGGQRAIG*RLAMMLRCCGRSDS Trigger: GGAGTCTGAGCGGCCGCAGCAGCGCAGCATCATCGCCAGCCGCCAGCCGATCGCCCGCTGACCACCGCGGCTACGCCAGCCTACGCGCAG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS GCA 90 bp | GGGCTCCCCCAGGGGCAGCAGGGCAGCTTGCTCTGGAGAGAACGATaGAGCCGCCTTGCTGCCGCCCGCCGGGACCAGCTTAGCGTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: GLPQGQQGSLLWRER*SRLAAARRDQLSVG Trigger: CCCCACGCTAAGCTGGTCCCGGCGGGCGGCAGCAAGGCGGCTGCATCGTTCTCTCCAGAGCAAGCTGCCCTGCTGCCCCTGGGGGAGCCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 90 bp | GTAGACGGCCGTGGGCTCCCCCAGGGGCAGCAGGGCAGCTTGCTCTaGAGAGAACGATGCAGCCGCCTTGCTGCCGCCCGCCGGGACCAG | + |
|
Preference number: 5 (lower is better) Translates to: VDGRGLPQGQQGSLL*RERCSRLAAARRDQ Trigger: CTGGTCCCGGCGGGCGGCAGCAAGGCGGCTGCATCGTTCTCTCCAGAGCAAGCTGCCCTGCTGCCCCTGGGGGAGCCCACGGCCGTCTAC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 90 bp | CGGCCGGAGTGGCCGCACTGGGAGTCCGCACCTTGTAGACGGCCGTaGGCTCCCCCAGGGGCAGCAGGGCAGCTTGCTCTGGAGAGAACG | + |
|
Preference number: 5 (lower is better) Translates to: RPEWPHWESAPCRRP*APPGAAGQLALERT Trigger: CGTTCTCTCCAGAGCAAGCTGCCCTGCTGCCCCTGGGGGAGCCCACGGCCGTCTACAAGGTGCGGACTCCCAGTGCGGCCACTCCGGCCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CAA 90 bp | GGCCCCTGGACCACATCCCACAGTCTCCTGTCCTCCCGCCGGCTCTGGGTAGCCCCCTTCTCCCCTGGCTaGGCTGTGGCCGCCGATCCC | + |
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Preference number: 5 (lower is better) Translates to: GPWTTSHSLLSSRRLWVAPFSPG*AVAADP Trigger: GGGATCGGCGGCCACAGCCAAGCCAGGGGAGAAGGG...GGCTACCCAGAGCCGGCGGGAGGACAGGAGACTGTGGGATGTGGTCCAGGGGCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 90 bp | GCGAGCATCCCGGGCCTCCATCTTCGTACAACCCCAGTGGATCACTaGGGTCGGCGCTCGCTCCCAGGCCCCCGACGGGAGACGCCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: ASIPGLHLRTTPVDH*GRRSLPGPRRETPK Trigger: CTTCGGCGTCTCCCGTCGGGGGCCTGGGAGCGAGCGCCGACCCCAGTGATCCACTGGGGTTGTACGAAGATGGAGGCCCGGGATGCTCGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 90 bp | GGTAGACGCGCTTCACTTTCTTGTCGGCAGGGTGTTTGGCTGGGGTaGCCAGCGCACTGGACGGCGAGGAGGAGGCGGCCGGAGTGGCCG | + |
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Preference number: 5 (lower is better) Translates to: GRRASLSCRQGVWLG*PAHWTARRRRPEWP Trigger: CGGCCACTCCGGCCGCCTCCTCCTCGCCGTCCAGTGCGCTGGCCACCCCAGCCAAACACCCTGCCGACAAGAAAGTGAAGCGCGTCTACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 90 bp | AAACAGGTAGACGCGCTTCACTTTCTTGTCGGCAGGGTGTTTGGCTaGGGTGGCCAGCGCACTGGACGGCGAGGAGGAGGCGGCCGGAGT | + |
|
Preference number: 5 (lower is better) Translates to: KQVDALHFLVGRVFG*GGQRTGRRGGGGRS Trigger: ACTCCGGCCGCCTCCTCCTCGCCGTCCAGTGCGCTGGCCACCCCAGCCAAACACCCTGCCGACAAGAAAGTGAAGCGCGTCTACCTGTTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 90 bp | TTCCAAACAGGTAGACGCGCTTCACTTTCTTGTCGGCAGGGTGTTTaGCTGGGGTGGCCAGCGCACTGGACGGCGAGGAGGAGGCGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: FQTGRRASLSCRQGV*LGWPAHWTARRRRP Trigger: CGGCCGCCTCCTCCTCGCCGTCCAGTGCGCTGGCCACCCCAGCCAAACACCCTGCCGACAAGAAAGTGAAGCGCGTCTACCTGTTTGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CAA 90 bp | GGCCCCTGGACCACATCCCACAGTCTCCTGTCCTCCCGCCGGCTCTGGGTAGCCACGCGCTTCACTTTCTaGTCGGCAGGGTGTTTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: GPWTTSHSLLSSRRLWVATRFTF*SAGCLA Trigger: AGCCAAACACCCTGCCGACAAGAAAGTGAAGCGCGT...GGCTACCCAGAGCCGGCGGGAGGACAGGAGACTGTGGGATGTGGTCCAGGGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CAA 90 bp | TTTTTAAAGCATTATGGTGCTGGGCTGAACTCTCCTCCCCTTATAAGACCAGGGTTCTTGGGCGCGGGCTaGGAGCTGCCGCCCGCGCCA | + |
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Preference number: 5 (lower is better) Translates to: FLKHYGAGLNSPPLIRPGFLGAG*ELPPAP Trigger: TGGCGCGGGCGGCAGCTCCAAGCCCGCGCCCAAGAA...CCCTGGTCTTATAAGGGGAGGAGAGTTCAGCCCAGCACCATAATGCTTTAAAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CAA 90 bp | CCCTTAACGGAACTGCCTCTTAAAAGGCAGGCGTCCTCGTGCCTGTCATGTTATGACTGCTCCATGATCTaGCGCCGCTCGATCTGCGAC | + |
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Preference number: 5 (lower is better) Translates to: PLTELPLKRQASSCLSCYDCSMI*RRSICD Trigger: GTCGCAGATCGAGCGGCGCAAGATCATGGAGCAGTC...ATAACATGACAGGCACGAGGACGCCTGCCTTTTAAGAGGCAGTTCCGTTAAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CAA 90 bp | GTGAGGGAAAGATTCCTTCGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTTGCTTGTCGGCAGGGTGTTaGGCTGGGGTGGCCAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: VRERFLRSLEALLGFFSCLSAGC*AGVASA Trigger: TGCGCTGGCCACCCCAGCCAAACACCCTGCCGACAA...GCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAGGAATCTTTCCCTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CAA 90 bp | ATCTTTAAACACAACAGCTATAAACCTGAACACATATGCTATCACCATGCCATACTGCTGCCCGCGACCTaGTCGCCCTTCTCCCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: IFKHNSYKPEHICYHHAILLPAT*SPFSPG Trigger: GCCAGGGGAGAAGGGCGACAAGGTCGCGGGCAGCAG...TATGGCATGGTGATAGCATATGTGTTCAGGTTTATAGCTGTTGTGTTTAAAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CAA 90 bp | TGCTATCACCATGCCATAGGACTGAAACAATTATATTTAGCGACAAGTAGAAAGGAGCTGCCCGCCACCTaGGGGCCACAGCTCTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: CYHHAIGLKQLYLATSRKELPAT*GPQLFL Trigger: CAAGAAGAGCTGTGGCCCCAAGGTGGCGGGCAGCTC...CTTTCTACTTGTCGCTAAATATAATTGTTTCAGTCCTATGGCATGGTGATAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CAA 90 bp | GTGAGGGAAAGATTCCTTCGGTCTTTAGAAGCTTTGCTTGGCTTCTTTTCTTGCTGGATGAACGGAATCTaGTCGCTGTCCTTGAGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: VRERFLRSLEALLGFFSCWMNGI*SLSLSS Trigger: GCTGCTCAAGGACAGCGACAAGATTCCGTTCATCCA...GCAAGAAAAGAAGCCAAGCAAAGCTTCTAAAGACCGAAGGAATCTTTCCCTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CAA 90 bp | AGCCACCCTATTATAAAATCAGGAAATCCAAACAGCGATTTACACCGATTAACAGGGCAGCAGGGCAGCTaGCTCTGGAGAGAACGATGC | + |
|
Preference number: 5 (lower is better) Translates to: SHPIIKSGNPNSDLHRLTGQQGS*LWRERC Trigger: GCATCGTTCTCTCCAGAGCAAGCTGCCCTGCTGCCC...TGTTAATCGGTGTAAATCGCTGTTTGGATTTCCTGATTTTATAATAGGGTGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS-3UTR CAA 90 bp | ATCTTTAAACACAACAGCTATAAACCTGAACACATATGCTATCACCATGCCATAATCTTGTCGCTGTCCTaGAGCAGCTTCCAGCGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: IFKHNSYKPEHICYHHAIILSLS*SSFQRL Trigger: CAAACGCTGGAAGCTGCTCAAGGACAGCGACAAGAT...TATGGCATGGTGATAGCATATGTGTTCAGGTTTATAGCTGTTGTGTTTAAAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | GGCTGGCGTAGCCGCGGTGGTCAGCGGGCGATCGGCTaGCGGCTGGCGATGATGCTGCGCTGCTGCGGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: GWRSRGGQRAIG*RLAMMLRCCGR Trigger: GCGGCCGCAGCAGCGCAGCATCATCGCCAGCCGCCAGCCGATCGCCCGCTGACCACCGCGGCTACGCCAGCC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS TCA 72 bp | GCGGTGGTCAGCGGGCGATCGGCTGGCGGCTGGCGATaGTGCTGCGCTGCTGCGGCCGCTCAGACTCCGGCC | + |
|
Preference number: 6 (lower is better) Translates to: AVVSGRSAGGWR*CCAAAAAQTPA Trigger: GGCCGGAGTCTGAGCGGCCGCAGCAGCGCAGCATCATCGCCAGCCGCCAGCCGATCGCCCGCTGACCACCGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS GCA 72 bp | TCGACGCGGTGGAGCCAGGCGTCGGGGAGGACGCGATaGCCAGCTCCAGGCCGGCGCCCGAGTCCGAGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: STRWSQASGRTR*PAPGRRPSPSS Trigger: AGAGCTCGGACTCGGGCGCCGGCCTGGAGCTGGGCATCGCGTCCTCCCCGACGCCTGGCTCCACCGCGTCGA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS GCA 72 bp | CACTGGGCGTCTTGCACCAGCTGGGGTCGTCCGCCTTaGCGCCCGTCGACGCGGTGGAGCCAGGCGTCGGGG | + |
|
Preference number: 6 (lower is better) Translates to: HWASCTSWGRPP*RPSTRWSQASG Trigger: CCCCGACGCCTGGCTCCACCGCGTCGACGGGCGGCAAGGCGGACGACCCCAGCTGGTGCAAGACGCCCAGTG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS GCA 72 bp | CGGGCGATCGGCTGGCGGCTGGCGATGATGCTGCGCTaGTGCGGCCGCTCAGACTCCGGCCATCGGGCGAGC | + |
|
Preference number: 6 (lower is better) Translates to: RAIGWRLAMMLR*CGRSDSGHRAS Trigger: GCTCGCCCGATGGCCGGAGTCTGAGCGGCCGCAGCAGCGCAGCATCATCGCCAGCCGCCAGCCGATCGCCCG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | AGCTGGGGTCGTCCGCCTTGCCGCCCGTCGACGCGGTaGAGCCAGGCGTCGGGGAGGACGCGATGCCCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: SWGRPPCRPSTR*SQASGRTRCPA Trigger: AGCTGGGCATCGCGTCCTCCCCGACGCCTGGCTCCACCGCGTCGACGGGCGGCAAGGCGGACGACCCCAGCT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CAA 72 bp | CCACTGGGCGTCTTGCACCAGCTGGGGTCGTCCGCCTaGCCGCCCGTCGACGCGGTGGAGCCAGGCGTCGGG | + |
|
Preference number: 6 (lower is better) Translates to: PLGVLHQLGSSA*PPVDAVEPGVG Trigger: CCCGACGCCTGGCTCCACCGCGTCGACGGGCGGCAAGGCGGACGACCCCAGCTGGTGCAAGACGCCCAGTGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CAA 72 bp | ACCGAGCTGCCCGCCACCTTGGGGCCACAGCTCTTCTaGGGCGCGGGCTTGGAGCTGCCGCCCGCGCCACCC | + |
|
Preference number: 6 (lower is better) Translates to: TELPATLGPQLF*GAGLELPPAPP Trigger: GGGTGGCGCGGGCGGCAGCTCCAAGCCCGCGCCCAAGAAGAGCTGTGGCCCCAAGGTGGCGGGCAGCTCGGT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | TGGACGGCGAGGAGGAGGCGGCCGGAGTGGCCGCACTaGGAGTCCGCACCTTGTAGACGGCCGTGGGCTCCC | + |
|
Preference number: 6 (lower is better) Translates to: WTARRRRPEWPH*ESAPCRRPWAP Trigger: GGGAGCCCACGGCCGTCTACAAGGTGCGGACTCCCAGTGCGGCCACTCCGGCCGCCTCCTCCTCGCCGTCCA 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | CCAGCGCACTGGACGGCGAGGAGGAGGCGGCCGGAGTaGCCGCACTGGGAGTCCGCACCTTGTAGACGGCCG | + |
|
Preference number: 6 (lower is better) Translates to: PAHWTARRRRPE*PHWESAPCRRP Trigger: CGGCCGTCTACAAGGTGCGGACTCCCAGTGCGGCCACTCCGGCCGCCTCCTCCTCGCCGTCCAGTGCGCTGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | TGTCGGCAGGGTGTTTGGCTGGGGTGGCCAGCGCACTaGACGGCGAGGAGGAGGCGGCCGGAGTGGCCGCAC | + |
|
Preference number: 6 (lower is better) Translates to: CRQGVWLGWPAH*TARRRRPEWPH Trigger: GTGCGGCCACTCCGGCCGCCTCCTCCTCGCCGTCCAGTGCGCTGGCCACCCCAGCCAAACACCCTGCCGACA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CAA 90 bp | GGGACCAGCTTAGCGTGGGGCTTGCCGACCGAGCTGCCCGCCACCTaGGGGCCACAGCTCTTCTTGGGCGCGGGCTTGGAGCTGCCGCCC | + |
|
Preference number: 6 (lower is better) Translates to: GTSLAWGLPTELPAT*GPQLFLGAGLELPP Trigger: GGGCGGCAGCTCCAAGCCCGCGCCCAAGAAGAGCTGTGGCCCCAAGGTGGCGGGCAGCTCGGTCGGCAAGCCCCACGCTAAGCTGGTCCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS GCA 72 bp | GCGATCGGCTGGCGGCTGGCGATGATGCTGCGCTGCTaGGGCCGCTCAGACTCCGGCCATCGGGCGAGCATC | + |
|
Preference number: 6 (lower is better) Translates to: AIGWRLAMMLRC*GRSDSGHRASI Trigger: GATGCTCGCCCGATGGCCGGAGTCTGAGCGGCCGCAGCAGCGCAGCATCATCGCCAGCCGCCAGCCGATCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | CGTGGGCTCCCCCAGGGGCAGCAGGGCAGCTTGCTCTaGAGAGAACGATGCAGCCGCCTTGCTGCCGCCCGC | + |
|
Preference number: 6 (lower is better) Translates to: RGLPQGQQGSLL*RERCSRLAAAR Trigger: GCGGGCGGCAGCAAGGCGGCTGCATCGTTCTCTCCAGAGCAAGCTGCCCTGCTGCCCCTGGGGGAGCCCACG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CAA 90 bp | CACCTTGTAGACGGCCGTGGGCTCCCCCAGGGGCAGCAGGGCAGCTaGCTCTGGAGAGAACGATGCAGCCGCCTTGCTGCCGCCCGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: HLVDGRGLPQGQQGS*LWRERCSRLAAARR Trigger: CCGGCGGGCGGCAGCAAGGCGGCTGCATCGTTCTCTCCAGAGCAAGCTGCCCTGCTGCCCCTGGGGGAGCCCACGGCCGTCTACAAGGTG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS GCA 72 bp | ACGGCCGTGGGCTCCCCCAGGGGCAGCAGGGCAGCTTaGTCTGGAGAGAACGATGCAGCCGCCTTGCTGCCG | + |
|
Preference number: 6 (lower is better) Translates to: TAVGSPRGSRAA*SGENDAAALLP Trigger: CGGCAGCAAGGCGGCTGCATCGTTCTCTCCAGAGCAAGCTGCCCTGCTGCCCCTGGGGGAGCCCACGGCCGT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | TGGCCGCACTGGGAGTCCGCACCTTGTAGACGGCCGTaGGCTCCCCCAGGGGCAGCAGGGCAGCTTGCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: WPHWESAPCRRP*APPGAAGQLAL Trigger: CAGAGCAAGCTGCCCTGCTGCCCCTGGGGGAGCCCACGGCCGTCTACAAGGTGCGGACTCCCAGTGCGGCCA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | CCGGGCCTCCATCTTCGTACAACCCCAGTGGATCACTaGGGTCGGCGCTCGCTCCCAGGCCCCCGACGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: PGLHLRTTPVDH*GRRSLPGPRRE Trigger: CTCCCGTCGGGGGCCTGGGAGCGAGCGCCGACCCCAGTGATCCACTGGGGTTGTACGAAGATGGAGGCCCGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS GCA 72 bp | CAGGGGCAGCAGGGCAGCTTGCTCTGGAGAGAACGATaGAGCCGCCTTGCTGCCGCCCGCCGGGACCAGCTT | + |
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Preference number: 6 (lower is better) Translates to: QGQQGSLLWRER*SRLAAARRDQL Trigger: AAGCTGGTCCCGGCGGGCGGCAGCAAGGCGGCTGCATCGTTCTCTCCAGAGCAAGCTGCCCTGCTGCCCCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | CGAGCATCCCGGGCCTCCATCTTCGTACAACCCCAGTaGATCACTGGGGTCGGCGCTCGCTCCCAGGCCCCC | + |
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Preference number: 6 (lower is better) Translates to: RASRASIFVQPQ*ITGVGARSQAP Trigger: GGGGGCCTGGGAGCGAGCGCCGACCCCAGTGATCCACTGGGGTTGTACGAAGATGGAGGCCCGGGATGCTCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CAA 72 bp | CCTGGCTTGGCTGTGGCCGCCGATCCCGCGCCCGCGTaGCCCGACTTCACCTTCTTTCGCGGCCGGTACTTG | + |
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Preference number: 6 (lower is better) Translates to: PGLAVAADPAPA*PDFTFFRGRYL Trigger: CAAGTACCGGCCGCGAAAGAAGGTGAAGTCGGGCAACGCGGGCGCGGGATCGGCGGCCACAGCCAAGCCAGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CAA 72 bp | TTAGCGTGGGGCTTGCCGACCGAGCTGCCCGCCACCTaGGGGCCACAGCTCTTCTTGGGCGCGGGCTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: LAWGLPTELPAT*GPQLFLGAGLE Trigger: CTCCAAGCCCGCGCCCAAGAAGAGCTGTGGCCCCAAGGTGGCGGGCAGCTCGGTCGGCAAGCCCCACGCTAA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | GCTTCACTTTCTTGTCGGCAGGGTGTTTGGCTGGGGTaGCCAGCGCACTGGACGGCGAGGAGGAGGCGGCCG | + |
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Preference number: 6 (lower is better) Translates to: ASLSCRQGVWLG*PAHWTARRRRP Trigger: CGGCCGCCTCCTCCTCGCCGTCCAGTGCGCTGGCCACCCCAGCCAAACACCCTGCCGACAAGAAAGTGAAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | GACGCGCTTCACTTTCTTGTCGGCAGGGTGTTTGGCTaGGGTGGCCAGCGCACTGGACGGCGAGGAGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: DALHFLVGRVFG*GGQRTGRRGGG Trigger: GCCTCCTCCTCGCCGTCCAGTGCGCTGGCCACCCCAGCCAAACACCCTGCCGACAAGAAAGTGAAGCGCGTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CCA 72 bp | GGTAGACGCGCTTCACTTTCTTGTCGGCAGGGTGTTTaGCTGGGGTGGCCAGCGCACTGGACGGCGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: GRRASLSCRQGV*LGWPAHWTARR Trigger: CCTCCTCGCCGTCCAGTGCGCTGGCCACCCCAGCCAAACACCCTGCCGACAAGAAAGTGAAGCGCGTCTACC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS CAA 72 bp | TCCGCCTCCTGGATGAACGGAATCTTGTCGCTGTCCTaGAGCAGCTTCCAGCGTTTGCCTAGCCGCTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: SASWMNGILSLS*SSFQRLPSRLE Trigger: CTCCAAGCGGCTAGGCAAACGCTGGAAGCTGCTCAAGGACAGCGACAAGATTCCGTTCATCCAGGAGGCGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS TCA 72 bp | GGAGCTGAAACTGCCCAGGGACATGCTCTCAAAGTTTaGGCTGGGGTTCAGGTCGAGCAGGTCGTCTTCGAA | + |
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Preference number: 6 (lower is better) Translates to: GAETAQGHALKV*AGVQVEQVVFE Trigger: TTCGAAGACGACCTGCTCGACCTGAACCCCAGCTCAAACTTTGAGAGCATGTCCCTGGGCAGTTTCAGCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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| CDS TCA 72 bp | TTCGAAGTTAAAATCCAGGTCCCGATCGAGCGCCGATaGGGAGCTGAAACTGCCCAGGGACATGCTCTCAAA | + |
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Preference number: 6 (lower is better) Translates to: FEVKIQVPIERR*GAETAQGHALK Trigger: TTTGAGAGCATGTCCCTGGGCAGTTTCAGCTCCTCATCGGCGCTCGATCGGGACCTGGATTTTAACTTCGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067230.6 |
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