Pregenerated sensors for SOX3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045179Ensembl transcript IDs: ENSMUST00000135107.4
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATAGATCACTGCAGAAATCACAAACTCAACAGCCTAAACGCGCACTaGACAGAGCTGTCCCGCGGCCAGGGGCGGCAAGGCGGGAAACAC | + |
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Preference number: 1 (lower is better) Translates to: IDHCRNHKLNSLNAH*TELSRGQGRQGGKH Trigger: GTGTTTCCCGCCTTGCCGCCCCTGGCCGCGGGACAGCTCTGTCCAGTGCGCGTTTAGGCTGTTGAGTTTGTGATTTCTGCAGTGATCTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| 3UTR CAA 90 bp | GCGGCTCTAGCAAGTCCCATTTCCGCTGCTCGGGACTTCTCGCTTTaGTACAAAACCCCGACAGTTACGGCCAAACTTTCGGTCCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: AALASPISAARDFSL*YKTPTVTAKLSVLL Trigger: GAGGAGGACCGAAAGTTTGGCCGTAACTGTCGGGGTTTTGTACAAAAGCGAGAAGTCCCGAGCAGCGGAAATGGGACTTGCTAGAGCCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| 3UTR CCA 72 bp | TGCAGAAATCACAAACTCAACAGCCTAAACGCGCACTaGACAGAGCTGTCCCGCGGCCAGGGGCGGCAAGGC | + |
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Preference number: 3 (lower is better) Translates to: CRNHKLNSLNAH*TELSRGQGRQG Trigger: GCCTTGCCGCCCCTGGCCGCGGGACAGCTCTGTCCAGTGCGCGTTTAGGCTGTTGAGTTTGTGATTTCTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| 3UTR-3UTR CAA 90 bp | TGTCCCGCGGCCAGGGGCGGCAAGGCGGGAAACACACGCACACCTGGCTATAAACGGGACTTCTCGCTTTaGTACAAAACCCCGACAGTT | + |
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Preference number: 3 (lower is better) Translates to: CPAARGGKAGNTRTPGYKRDFSL*YKTPTV Trigger: AACTGTCGGGGTTTTGTACAAAAGCGAGAAGTCCCG...TTTATAGCCAGGTGTGCGTGTGTTTCCCGCCTTGCCGCCCCTGGCCGCGGGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| 3UTR CCA 72 bp | AAGCAATACGACTGGGGGTGGAGGCATTGCAGTTCTTaGGGGCGGGCAACCTCACTCAGTTCTCGATTAATA | + |
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Preference number: 3 (lower is better) Translates to: KQYDWGWRHCSS*GRATSLSSRLI Trigger: TATTAATCGAGAACTGAGTGAGGTTGCCCGCCCCCAAGAACTGCAATGCCTCCACCCCCAGTCGTATTGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CCA 90 bp | ACAGAGCTGTCCCGCGGCCAGGGGCGGCAAGGCGGGAAACACACGCACACCTGGGGGACTCCGTCGGAGTaGTGCTCAGGGGCCGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: TELSRGQGRQGGKHTHTWGTPSE*CSGAGG Trigger: CCCGCCGGCCCCTGAGCACCACTCCGACGGAGTCCC...CCAGGTGTGCGTGTGTTTCCCGCCTTGCCGCCCCTGGCCGCGGGACAGCTCTGT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CCA 90 bp | ACAGAGCTGTCCCGCGGCCAGGGGCGGCAAGGCGGGAAACACACGCACACCTGGTACGTGTCCAGGCGCTaGCCCACGCCCACCGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: TELSRGQGRQGGKHTHTWYVSRR*PTPTGL Trigger: CAGCCCGGTGGGCGTGGGCCAGCGCCTGGACACGTA...CCAGGTGTGCGTGTGTTTCCCGCCTTGCCGCCCCTGGCCGCGGGACAGCTCTGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR GCA 90 bp | AAACGCGCACTGGACAGAGCTGTCCCGCGGCCAGGGGCGGCAAGGCGGGAAACACCGAGGCACGCGCGCTaGGAGTGCGAAGCGATGGCG | + |
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Preference number: 4 (lower is better) Translates to: KRALDRAVPRPGAARRETPRHAR*ECEAMA Trigger: CGCCATCGCTTCGCACTCGCAGCGCGCGTGCCTCGG...TGTTTCCCGCCTTGCCGCCCCTGGCCGCGGGACAGCTCTGTCCAGTGCGCGTTT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CCA 90 bp | ACAGAGCTGTCCCGCGGCCAGGGGCGGCAAGGCGGGAAACACACGCACACCTGGTCACCACGGAGCCCATaGGGCCCAGGCTCATGGCGG | + |
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Preference number: 4 (lower is better) Translates to: TELSRGQGRQGGKHTHTWSPRSP*GPGSWR Trigger: CCGCCATGAGCCTGGGCCCCATGGGCTCCGTGGTGA...CCAGGTGTGCGTGTGTTTCCCGCCTTGCCGCCCCTGGCCGCGGGACAGCTCTGT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CCA 90 bp | AAACGCGCACTGGACAGAGCTGTCCCGCGGCCAGGGGCGGCAAGGCGGGAAACAGCGAGTAGGCGCCGTTaGCCCAGCCGTTCACGTGCG | + |
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Preference number: 4 (lower is better) Translates to: KRALDRAVPRPGAARRETASRRR*PSRSRA Trigger: CGCACGTGAACGGCTGGGCCAACGGCGCCTACTCGC...TGTTTCCCGCCTTGCCGCCCCTGGCCGCGGGACAGCTCTGTCCAGTGCGCGTTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CCA 90 bp | CGGTTTCTCCGCAAACACCACAGCGATTCCCAGCCAGAGGGGGAGGGAGGGGCACTGAGGCAGCGCGGGTaGCGGCGGCGGGCTGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: RFLRKHHSDSQPEGEGGALRQRG*RRRAAH Trigger: ATGAGCAGCCCGCCGCCGCCACCCGCGCTGCCTCAG...TGCCCCTCCCTCCCCCTCTGGCTGGGAATCGCTGTGGTGTTTGCGGAGAAACCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR TCA 90 bp | CAGCCTAAACGCGCACTGGACAGAGCTGTCCCGCGGCCAGGGGCGGCAAGGCGGCGGGCTTCTCTCACCTaGTGCGTTCTCTCGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: QPKRALDRAVPRPGAARRRASLT*CVLSSW Trigger: CCAGCTCGAGAGAACGCATCAGGTGAGAGAAGCCCG...CCGCCTTGCCGCCCCTGGCCGCGGGACAGCTCTGTCCAGTGCGCGTTTAGGCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR TCA 90 bp | CGGTTTCTCCGCAAACACCACAGCGATTCCCAGCCAGAGGGGGAGGGAGGGGCAGCGGCACCGTTCCATTaGCCGCAGTCCCGGCGCCCT | + |
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Preference number: 4 (lower is better) Translates to: RFLRKHHSDSQPEGEGGAAAPFH*PQSRRP Trigger: AGGGCGCCGGGACTGCGGTCAATGGAACGGTGCCGC...TGCCCCTCCCTCCCCCTCTGGCTGGGAATCGCTGTGGTGTTTGCGGAGAAACCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR GCA 90 bp | GGCCAAACTTTCGGTCCTCCTCATCTTCGGTACAAGGCAACGGTCCCAGGCGAGGGGGCGGGAAGGAGGTaGGCCAGCGTGGCGGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: GQTFGPPHLRYKATVPGEGAGRR*ASVAGG Trigger: TCCTCCCGCCACGCTGGCGCACCTCCTTCCCGCCCC...CTCGCCTGGGACCGTTGCCTTGTACCGAAGATGAGGAGGACCGAAAGTTTGGCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR GCA 90 bp | TGTCCCGCGGCCAGGGGCGGCAAGGCGGGAAACACACGCACACCTGGCTATAAAGCCCAGCCGTTCACGTaGGTGTACGTGTCCAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: CPAARGGKAGNTRTPGYKAQPFT*VYVSRR Trigger: GCGCCTGGACACGTACACGCACGTGAACGGCTGGGC...TTTATAGCCAGGTGTGCGTGTGTTTCCCGCCTTGCCGCCCCTGGCCGCGGGACA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CCA 90 bp | TGTCCCGCGGCCAGGGGCGGCAAGGCGGGAAACACACGCACACCTGGCTATAAAGCTCTGGGCGCCGGGTaGCATCATGGGGCTGTACTG | + |
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Preference number: 4 (lower is better) Translates to: CPAARGGKAGNTRTPGYKALGAG*HHGAVL Trigger: CAGTACAGCCCCATGATGCCACCCGGCGCCCAGAGC...TTTATAGCCAGGTGTGCGTGTGTTTCCCGCCTTGCCGCCCCTGGCCGCGGGACA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR GCA 90 bp | CCGACAGTTACGGCCAAACTTTCGGTCCTCCTCATCTTCGGTACAAGGCAACGGCGCGCCACTCTTGCCTaGAGCGCCGGGAGCTGCGGG | + |
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Preference number: 4 (lower is better) Translates to: PTVTAKLSVLLIFGTRQRRATLA*SAGSCG Trigger: CCCGCAGCTCCCGGCGCTGCAGGCAAGAGTGGCGCG...CCGTTGCCTTGTACCGAAGATGAGGAGGACCGAAAGTTTGGCCGTAACTGTCGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR GCA 90 bp | GCCAGGGGCGGCAAGGCGGGAAACACACGCACACCTGGCTATAAATTAACATTGCACGCGCGCTGCGAGTaGGAAGCGATGGCGGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: ARGGKAGNTRTPGYKLTLHARCE*EAMAGG Trigger: GCCGCCCGCCATCGCTTCGCACTCGCAGCGCGCGTG...CAATGTTAATTTATAGCCAGGTGTGCGTGTGTTTCCCGCCTTGCCGCCCCTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CCA 90 bp | AGAGGAAAACAGAAGCAATACGACTGGGGGTGGAGGCATTGCAGTTCTTGGGGGGGAGGTGCGCCAGCGTaGCGGGAGGAGACGGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: RGKQKQYDWGWRHCSSWGGGAPA*REETAL Trigger: GAGCGCCGTCTCCTCCCGCCACGCTGGCGCACCTCC...CCCCCAAGAACTGCAATGCCTCCACCCCCAGTCGTATTGCTTCTGTTTTCCTCT 62% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR TCA 90 bp | CTCCTCATCTTCGGTACAAGGCAACGGTCCCAGGCGAGCAAAGCTAAACAGCAACTGGAGCGGCCACCGTaGAAAGGCCGGGGGACTCCG | + |
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Preference number: 4 (lower is better) Translates to: LLIFGTRQRSQASKAKQQLERPP*KGRGTP Trigger: CGGAGTCCCCCGGCCTTTTCACGGTGGCCGCTCCAG...TTGCTGTTTAGCTTTGCTCGCCTGGGACCGTTGCCTTGTACCGAAGATGAGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR GCA 90 bp | ACATTTTCAACTGCAACAGAAGAACCTAGGAATCCGGGAAGAGGAAGGGGCCGCGCGGCGGGCTGCTCATaGTCGGGGGCTGCGCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: TFSTATEEPRNPGRGRGRAAGCS*SGAARS Trigger: GCTACGCGCAGCCCCCGAGCATGAGCAGCCCGCCGC...GCGGCCCCTTCCTCTTCCCGGATTCCTAGGTTCTTCTGTTGCAGTTGAAAATGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CCA 90 bp | CAGTTACGGCCAAACTTTCGGTCCTCCTCATCTTCGGTACAAGGCAACGGTCCCCGCCGGGTGGCATCATaGGGCTGTACTGCAGGCCGG | + |
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Preference number: 4 (lower is better) Translates to: QLRPNFRSSSSSVQGNGPRRVAS*GCTAGR Trigger: CCGGCCTGCAGTACAGCCCCATGATGCCACCCGGCG...GGGACCGTTGCCTTGTACCGAAGATGAGGAGGACCGAAAGTTTGGCCGTAACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CCA 90 bp | CTCCTCATCTTCGGTACAAGGCAACGGTCCCAGGCGAGCAAAGCTAAACAGCAAGCGAGTGCGAAGCGATaGCGGGCGGCGGAGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LLIFGTRQRSQASKAKQQASAKR*RAAESW Trigger: CCAGCTCTCCGCCGCCCGCCATCGCTTCGCACTCGC...TTGCTGTTTAGCTTTGCTCGCCTGGGACCGTTGCCTTGTACCGAAGATGAGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR GCA 90 bp | AAAGCCAGAGGAAAACAGAAGCAATACGACTGGGGGTGGAGGCATTGCAGTTCTTGCTGGTGCACGCCGTaGAGCCGGCCGCCTGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: KARGKQKQYDWGWRHCSSCWCTP*SRPPGS Trigger: GCTCCCAGGCGGCCGGCTGCACGGCGTGCACCAGCA...AGAACTGCAATGCCTCCACCCCCAGTCGTATTGCTTCTGTTTTCCTCTGGCTTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CCA 90 bp | TGGTCAGAAGCCAGCGGCTCTAGCAAGTCCCATTTCCGCTGCTCGGGACTTCTCCGCGTCCCCGCCAGGTaGCAGGTACATGCTGATCAT | + |
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Preference number: 4 (lower is better) Translates to: WSEASGSSKSHFRCSGLLRVPAR*QVHADH Trigger: ATGATCAGCATGTACCTGCCACCTGGCGGGGACGCG...GAGAAGTCCCGAGCAGCGGAAATGGGACTTGCTAGAGCCGCTGGCTTCTGACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR TCA 90 bp | CCGACAGTTACGGCCAAACTTTCGGTCCTCCTCATCTTCGGTACAAGGCAACGGGCCCCACGGGGTTCTTaGGTTCAGTCTCCAGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: PTVTAKLSVLLIFGTRQRAPRGS*VQSPAG Trigger: GCCTGCTGGAGACTGAACTCAAGAACCCCGTGGGGC...CCGTTGCCTTGTACCGAAGATGAGGAGGACCGAAAGTTTGGCCGTAACTGTCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| 3UTR CAA 72 bp | GCGGGAAACACACGCACACCTGGCTATAAATTAACATaGGCTTTAGCTGTCGCGCCAATTGGCGCGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: AGNTRTPGYKLT*ALAVAPIGAAS Trigger: GCTGGCCGCGCCAATTGGCGCGACAGCTAAAGCCAATGTTAATTTATAGCCAGGTGTGCGTGTGTTTCCCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR GCA 90 bp | AACACACGCACACCTGGCTATAAATTAACATTGGCTTTAGCTGTCGCGCCAATTGGTTCGCGCCACTCTTaGCTGCAGCGCCGGGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: NTRTPGYKLTLALAVAPIGSRHS*LQRREL Trigger: CAGCTCCCGGCGCTGCAGGCAAGAGTGGCGCGAACC...AATTGGCGCGACAGCTAAAGCCAATGTTAATTTATAGCCAGGTGTGCGTGTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| 3UTR CAA 72 bp | GCAAGTCCCATTTCCGCTGCTCGGGACTTCTCGCTTTaGTACAAAACCCCGACAGTTACGGCCAAACTTTCG | + |
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Preference number: 4 (lower is better) Translates to: ASPISAARDFSL*YKTPTVTAKLS Trigger: CGAAAGTTTGGCCGTAACTGTCGGGGTTTTGTACAAAAGCGAGAAGTCCCGAGCAGCGGAAATGGGACTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS GCA 90 bp | CGCCACCACCACCACCGCCGCCGTTCGCGCCCCCGCTGCCCCCGTTaGCTGCGTTCGCTCCGCCGGCTGGGTTCGCGCCACTCTTGCCTG | + |
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Preference number: 5 (lower is better) Translates to: RHHHHRRRSRPRCPR*LRSLRRLGSRHSCL Trigger: CAGGCAAGAGTGGCGCGAACCCAGCCGGCGGAGCGAACGCAGGCAACGGGGGCAGCGGGGGCGCGAACGGCGGCGGTGGTGGTGGTGGCG 77% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS GCA 90 bp | ACCACCACCACCGCCGCCGTTCGCGCCCCCGCTGCCCCCGTTGCCTaGGTTCGCTCCGCCGGCTGGGTTCGCGCCACTCTTGCCTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: TTTTAAVRAPAAPVA*VRSAGWVRATLACS Trigger: GCTGCAGGCAAGAGTGGCGCGAACCCAGCCGGCGGAGCGAACGCAGGCAACGGGGGCAGCGGGGGCGCGAACGGCGGCGGTGGTGGTGGT 76% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CAA 90 bp | CAGCCTAAACGCGCACTGGACAGAGCTGTCCCGCGGCCAGGGGCGGCAAGGCGGAGCGGCACCGTTCCATaGACCGCAGTCCCGGCGCCC | + |
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Preference number: 5 (lower is better) Translates to: QPKRALDRAVPRPGAARRSGTVP*TAVPAP Trigger: GGGCGCCGGGACTGCGGTCAATGGAACGGTGCCGCT...CCGCCTTGCCGCCCCTGGCCGCGGGACAGCTCTGTCCAGTGCGCGTTTAGGCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS-3UTR CAA 90 bp | CCGACAGTTACGGCCAAACTTTCGGTCCTCCTCATCTTCGGTACAAGGCAACGGGGCCCCACGGGGTTCTaGAGTTCAGTCTCCAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PTVTAKLSVLLIFGTRQRGPTGF*SSVSSR Trigger: CCTGCTGGAGACTGAACTCAAGAACCCCGTGGGGCC...CCGTTGCCTTGTACCGAAGATGAGGAGGACCGAAAGTTTGGCCGTAACTGTCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS GCA 72 bp | CGCCACCACCACCACCGCCGCCGTTCGCGCCCCCGCTaGCCCCGTTGCCTGCGTTCGCTCCGCCGGCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: RHHHHRRRSRPR*PRCLRSLRRLG Trigger: ACCCAGCCGGCGGAGCGAACGCAGGCAACGGGGGCAGCGGGGGCGCGAACGGCGGCGGTGGTGGTGGTGGCG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS CAA 72 bp | CCACCACCGCCGCCGTTCGCGCCCCCGCTGCCCCCGTaGCCTGCGTTCGCTCCGCCGGCTGGGTTCGCGCCA | + |
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Preference number: 6 (lower is better) Translates to: PPPPPFAPPLPP*PAFAPPAGFAP Trigger: TGGCGCGAACCCAGCCGGCGGAGCGAACGCAGGCAACGGGGGCAGCGGGGGCGCGAACGGCGGCGGTGGTGG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS CAA 90 bp | CCGCCACCACCACCACCGCCGCCGTTCGCGCCCCCGCTGCCCCCGTaGCCTGCGTTCGCTCCGCCGGCTGGGTTCGCGCCACTCTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: PPPPPPPPFAPPLPP*PAFAPPAGFAPLLP Trigger: AGGCAAGAGTGGCGCGAACCCAGCCGGCGGAGCGAACGCAGGCAACGGGGGCAGCGGGGGCGCGAACGGCGGCGGTGGTGGTGGTGGCGG 77% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS CCA 72 bp | CCCGCTGCCCCCGTTGCCTGCGTTCGCTCCGCCGGCTaGGTTCGCGCCACTCTTGCCTGCAGCGCCGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: PAAPVACVRSAG*VRATLACSAGS Trigger: GCTCCCGGCGCTGCAGGCAAGAGTGGCGCGAACCCAGCCGGCGGAGCGAACGCAGGCAACGGGGGCAGCGGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS GCA 72 bp | ATGTCGCGCAGGTCGCCGAGGCACGCGCGCTGCGAGTaGGAAGCGATGGCGGGCGGCGGAGAGCTGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: MSRRSPRHARCE*EAMAGGGELGS Trigger: GGAGCCCAGCTCTCCGCCGCCCGCCATCGCTTCGCACTCGCAGCGCGCGTGCCTCGGCGACCTGCGCGACAT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS CCA 72 bp | GGCCATGTCGTAGCGGTGCATCTGAGGCAGCGCGGGTaGCGGCGGCGGGCTGCTCATGCTCGGGGGCTGCGC | + |
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Preference number: 6 (lower is better) Translates to: GHVVAVHLRQRG*RRRAAHARGLR Trigger: GCGCAGCCCCCGAGCATGAGCAGCCCGCCGCCGCCACCCGCGCTGCCTCAGATGCACCGCTACGACATGGCC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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| CDS TCA 72 bp | GAGGAGACGGCGCTCCGGGGGCTGGAGCGGCCACCGTaGAAAGGCCGGGGGACTCCGTCGGAGTGGTGCTCA | + |
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Preference number: 6 (lower is better) Translates to: EETALRGLERPP*KGRGTPSEWCS Trigger: TGAGCACCACTCCGACGGAGTCCCCCGGCCTTTTCACGGTGGCCGCTCCAGCCCCCGGAGCGCCGTCTCCTC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135107.4 |
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