Pregenerated sensors for SOX21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061517Ensembl transcript IDs: ENSMUST00000170662.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCGCTCTCCTTTAAAGTTGGCTGCAGAAGTGCGGCGGCTGGGGAATaGTGCTGCGAAATCCACACGCTCTCTCGCCCGCGCCCTCGAAGG | + |
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Preference number: 1 (lower is better) Translates to: PLSFKVGCRSAAAGE*CCEIHTLSRPRPRR Trigger: CCTTCGAGGGCGCGGGCGAGAGAGCGTGTGGATTTCGCAGCATCATTCCCCAGCCGCCGCACTTCTGCAGCCAACTTTAAAGGAGAGCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR CCA 90 bp | CTCTCTCGCCCGCGCCCTCGAAGGCTCGGCCTTTCAAGCCCGGACTaGCATCTCCGCCTCTGCCTGACACCTATACATCTATGTACATAC | + |
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Preference number: 1 (lower is better) Translates to: LSRPRPRRLGLSSPD*HLRLCLTPIHLCTY Trigger: GTATGTACATAGATGTATAGGTGTCAGGCAGAGGCGGAGATGCCAGTCCGGGCTTGAAAGGCCGAGCCTTCGAGGGCGCGGGCGAGAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR TCA 90 bp | GAAGGCTCGGCCTTTCAAGCCCGGACTGGCATCTCCGCCTCTGCCTaGCACCTATACATCTATGTACATACAAACCGGGCCCCCTGTCGC | + |
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Preference number: 1 (lower is better) Translates to: EGSAFQARTGISASA*HLYIYVHTNRAPCR Trigger: GCGACAGGGGGCCCGGTTTGTATGTACATAGATGTATAGGTGTCAGGCAGAGGCGGAGATGCCAGTCCGGGCTTGAAAGGCCGAGCCTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR GCA 90 bp | CCTCGAAGGCTCGGCCTTTCAAGCCCGGACTGGCATCTCCGCCTCTaGCTGACACCTATACATCTATGTACATACAAACCGGGCCCCCTG | + |
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Preference number: 1 (lower is better) Translates to: PRRLGLSSPDWHLRL*LTPIHLCTYKPGPL Trigger: CAGGGGGCCCGGTTTGTATGTACATAGATGTATAGGTGTCAGGCAGAGGCGGAGATGCCAGTCCGGGCTTGAAAGGCCGAGCCTTCGAGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR CCA 90 bp | CAAAAGGAACGGCGGTCATCTCTCATATACAGGCCGGATTCGAGCTaGTCATTCACTGGTCAAGAAGAGATCCGGGCTGTGTTCTGCAGA | + |
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Preference number: 1 (lower is better) Translates to: QKERRSSLIYRPDSS*SFTGQEEIRAVFCR Trigger: TCTGCAGAACACAGCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCTGTATATGAGAGATGACCGCCGTTCCTTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR-3UTR GCA 90 bp | TACAGGCCGGATTCGAGCTGGTCATTCACTGGTCAAGAAGAGATCCGGGCTGTGTGGCATCTCCGCCTCTaGCTGACACCTATACATCTA | + |
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Preference number: 2 (lower is better) Translates to: YRPDSSWSFTGQEEIRAVWHLRL*LTPIHL Trigger: TAGATGTATAGGTGTCAGGCAGAGGCGGAGATGCCA...CACAGCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR-3UTR TCA 90 bp | ATACAGGCCGGATTCGAGCTGGTCATTCACTGGTCAAGAAGAGATCCGGGCTGTATCTCCGCCTCTGCCTaGCACCTATACATCTATGTA | + |
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Preference number: 2 (lower is better) Translates to: IQAGFELVIHWSRRDPGCISASA*HLYIYV Trigger: TACATAGATGTATAGGTGTCAGGCAGAGGCGGAGAT...ACAGCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCTGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR-3UTR CCA 90 bp | GCGTTCGTAAACTGTGTCACAAGTCCAAGCCAGCGGACTCAGAGACTTCTAGCTAGGCCGGATTCGAGCTaGTCATTCACTGGTCAAGAA | + |
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Preference number: 2 (lower is better) Translates to: AFVNCVTSPSQRTQRLLARPDSS*SFTGQE Trigger: TTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCT...AGCTAGAAGTCTCTGAGTCCGCTGGCTTGGACTTGTGACACAGTTTACGAACGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGGGAGCTCTGAAAAACAGGCCAAAACAGTTCAGCTTGGGAGGAGTACTAGTGAGCTGGTCATTCACTaGTCAAGAAGAGATCCGGGC | + |
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Preference number: 2 (lower is better) Translates to: EGSSEKQAKTVQLGRSTSELVIH*SRRDPG Trigger: GCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTC...ACTAGTACTCCTCCCAAGCTGAACTGTTTTGGCCTGTTTTTCAGAGCTCCCTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR CAA 90 bp | CACATTTACAATCTTAAGGTGAACTCAGCCTTGAGGGGAAACAGCTaGTGTACTTTCCACGCGTTCGTAAACTGTGTCACAAGTCCAAGC | + |
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Preference number: 2 (lower is better) Translates to: HIYNLKVNSALRGNS*CTFHAFVNCVTSPS Trigger: GCTTGGACTTGTGACACAGTTTACGAACGCGTGGAAAGTACACAAGCTGTTTCCCCTCAAGGCTGAGTTCACCTTAAGATTGTAAATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR-3UTR TCA 90 bp | TTCAGCTTGGGAGGAGTACTAGTTGGTGAGAGGCATCTTTCAAAAACAATTCTGGGTAGAATATCGAACTaGCAACTTCCACCTCACATG | + |
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Preference number: 2 (lower is better) Translates to: FSLGGVLVGERHLSKTILGRISN*QLPPHM Trigger: CATGTGAGGTGGAAGTTGTCAGTTCGATATTCTACC...CAGAATTGTTTTTGAAAGATGCCTCTCACCAACTAGTACTCCTCCCAAGCTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR CCA 72 bp | CCGCGCCCTCGAAGGCTCGGCCTTTCAAGCCCGGACTaGCATCTCCGCCTCTGCCTGACACCTATACATCTA | + |
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Preference number: 3 (lower is better) Translates to: PRPRRLGLSSPD*HLRLCLTPIHL Trigger: TAGATGTATAGGTGTCAGGCAGAGGCGGAGATGCCAGTCCGGGCTTGAAAGGCCGAGCCTTCGAGGGCGCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR TCA 72 bp | TTTAAAGTTGGCTGCAGAAGTGCGGCGGCTGGGGAATaGTGCTGCGAAATCCACACGCTCTCTCGCCCGCGC | + |
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Preference number: 3 (lower is better) Translates to: FKVGCRSAAAGE*CCEIHTLSRPR Trigger: GCGCGGGCGAGAGAGCGTGTGGATTTCGCAGCATCATTCCCCAGCCGCCGCACTTCTGCAGCCAACTTTAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR GCA 72 bp | CCAGCTATTTCAGACCGAACATCAGAACCGAGCTCATaGAACACGGACCAAGTGGGACCGGGAGGGAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: PAISDRTSEPSS*NTDQVGPGGRK Trigger: CTTCCTCCCTCCCGGTCCCACTTGGTCCGTGTTGCATGAGCTCGGTTCTGATGTTCGGTCTGAAATAGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR CCA 72 bp | CGGCGGTCATCTCTCATATACAGGCCGGATTCGAGCTaGTCATTCACTGGTCAAGAAGAGATCCGGGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: RRSSLIYRPDSS*SFTGQEEIRAV Trigger: CACAGCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCTGTATATGAGAGATGACCGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR GCA 72 bp | CTCGGCCTTTCAAGCCCGGACTGGCATCTCCGCCTCTaGCTGACACCTATACATCTATGTACATACAAACCG | + |
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Preference number: 3 (lower is better) Translates to: LGLSSPDWHLRL*LTPIHLCTYKP Trigger: CGGTTTGTATGTACATAGATGTATAGGTGTCAGGCAGAGGCGGAGATGCCAGTCCGGGCTTGAAAGGCCGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR TCA 72 bp | GAAAATAACACATTTCCCAAGACTCAACGTTTTCACTaGCATACACACATTTACAATCTTAAGGTGAACTCA | + |
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Preference number: 3 (lower is better) Translates to: ENNTFPKTQRFH*HTHIYNLKVNS Trigger: TGAGTTCACCTTAAGATTGTAAATGTGTGTATGTCAGTGAAAACGTTGAGTCTTGGGAAATGTGTTATTTTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR CCA 90 bp | GCTCTCTCGCCCGCGCCCTCGAAGGCTCGGCCTTTCAAGCCCGGACTGGCATCTCGGGGTTGCCGGGACTaGGGTGCGAGTGCGTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: ALSPAPSKARPFKPGLASRGCRD*GASACA Trigger: GGCACACGCACTCGCACCCCAGTCCCGGCAACCCCG...AGATGCCAGTCCGGGCTTGAAAGGCCGAGCCTTCGAGGGCGCGGGCGAGAGAGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR GCA 90 bp | GGGCCCCCTGTCGCCCGAGGGCGCAGCGGAAGGCCGCGAGTCTCGAACCTATACGCCACGCGCTGCAGTTaGACGGGATCATGTAGCCGG | + |
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Preference number: 4 (lower is better) Translates to: GPPVARGRSGRPRVSNLYATRCS*TGSCSR Trigger: CCGGCTACATGATCCCGTGCAACTGCAGCGCGTGGC...GTATAGGTTCGAGACTCGCGGCCTTCCGCTGCGCCCTCGGGCGACAGGGGGCCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR GCA 90 bp | GGGCCCCCTGTCGCCCGAGGGCGCAGCGGAAGGCCGCGAGTCTCGAACCTATACCGACGACGAGATCTCTaGCATCTTGGAGCCCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: GPPVARGRSGRPRVSNLYRRRDL*HLGAQV Trigger: GACCTGGGCTCCAAGATGGCAGAGATCTCGTCGTCG...GTATAGGTTCGAGACTCGCGGCCTTCCGCTGCGCCCTCGGGCGACAGGGGGCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR GCA 90 bp | TGCGGCGGCTGGGGAATGATGCTGCGAAATCCACACGCTCTCTCGCCCGCGCCCTCATGTAGCCGGGGTTaGCGGGACTGGGGTGCGAGT | + |
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Preference number: 4 (lower is better) Translates to: CGGWGMMLRNPHALSPAPSCSRG*RDWGAS Trigger: ACTCGCACCCCAGTCCCGGCAACCCCGGCTACATGA...GGGCGCGGGCGAGAGAGCGTGTGGATTTCGCAGCATCATTCCCCAGCCGCCGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR GCA 90 bp | CCGAGGGCGCAGCGGAAGGCCGCGAGTCTCGAACCTATACATATGTACACGTGTGCCTTGAGCGCCGGGTaGTCGGCGTCCGCCACGCTG | + |
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Preference number: 4 (lower is better) Translates to: PRAQRKAASLEPIHMYTCALSAG*SASATL Trigger: CAGCGTGGCGGACGCCGAGCACCCGGCGCTCAAGGC...ACACGTGTACATATGTATAGGTTCGAGACTCGCGGCCTTCCGCTGCGCCCTCGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR CCA 90 bp | TACAGGCCGGATTCGAGCTGGTCATTCACTGGTCAAGAAGAGATCCGGGCTGTGGCTGCAGCCCCGGGCTaGGCCACGCGCTGCAGTTGC | + |
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Preference number: 4 (lower is better) Translates to: YRPDSSWSFTGQEEIRAVAAAPG*ATRCSC Trigger: GCAACTGCAGCGCGTGGCCCAGCCCGGGGCTGCAGC...CACAGCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCTGTA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR TCA 90 bp | CCGAGGGCGCAGCGGAAGGCCGCGAGTCTCGAACCTATACATATGTACACGTGTGCTTCTCCGACTCGGTaGGCAGCTTCCACTCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: PRAQRKAASLEPIHMYTCASPTR*AASTRR Trigger: GCGCCGAGTGGAAGCTGCTCACCGAGTCGGAGAAGC...ACACGTGTACATATGTATAGGTTCGAGACTCGCGGCCTTCCGCTGCGCCCTCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR GCA 90 bp | TACAGGCCGGATTCGAGCTGGTCATTCACTGGTCAAGAAGAGATCCGGGCTGTGGCAGCGGCCGCAGACTaGGGGAAGAAGACGCGCGCG | + |
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Preference number: 4 (lower is better) Translates to: YRPDSSWSFTGQEEIRAVAAAAD*GKKTRA Trigger: CGCGCGCGTCTTCTTCCCGCAGTCTGCGGCCGCTGC...CACAGCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCTGTA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR GCA 90 bp | TATTTCAGACCGAACATCAGAACCGAGCTCATGCAACACGGACCAAGTGGGACCGCAGTGAGTAGGGGCTaGCAGCGGCGGCGGCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: YFRPNIRTELMQHGPSGTAVSRG*QRRRRQ Trigger: CTGCCGCCGCCGCCGCTGGCAGCCCCTACTCACTGC...GGTCCCACTTGGTCCGTGTTGCATGAGCTCGGTTCTGATGTTCGGTCTGAAATA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR GCA 90 bp | TATTTCAGACCGAACATCAGAACCGAGCTCATGCAACACGGACCAAGTGGGACCTTGCCGGGACTGGGGTaGGAGTGCGTGTGCCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: YFRPNIRTELMQHGPSGTLPGLG*ECVCPP Trigger: CGGAGGGCACACGCACTCGCACCCCAGTCCCGGCAA...GGTCCCACTTGGTCCGTGTTGCATGAGCTCGGTTCTGATGTTCGGTCTGAAATA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR GCA 90 bp | ATACAGGCCGGATTCGAGCTGGTCATTCACTGGTCAAGAAGAGATCCGGGCTGTGGCTGGGCCACGCGCTaGAGTTGCACGGGATCATGT | + |
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Preference number: 4 (lower is better) Translates to: IQAGFELVIHWSRRDPGCGWATR*SCTGSC Trigger: ACATGATCCCGTGCAACTGCAGCGCGTGGCCCAGCC...ACAGCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCTGTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR GCA 90 bp | CAGGCCGGATTCGAGCTGGTCATTCACTGGTCAAGAAGAGATCCGGGCTGTGTTGCTGAGGCTTGCCCATaGCTGGCAGCAGGATGTAGG | + |
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Preference number: 4 (lower is better) Translates to: QAGFELVIHWSRRDPGCVAEACP*LAAGCR Trigger: CCTACATCCTGCTGCCAGGCATGGGCAAGCCTCAGC...AACACAGCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR TCA 90 bp | CCCGGACTGGCATCTCCGCCTCTGCCTGACACCTATACATCTATGTACATACAACGTTCATGGGCCGCTTaGCGTGGTCCACAGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PGLASPPLPDTYTSMYIQRSWAA*RGPQAW Trigger: CCAAGCCTGTGGACCACGTCAAGCGGCCCATGAACG...TTGTATGTACATAGATGTATAGGTGTCAGGCAGAGGCGGAGATGCCAGTCCGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR GCA 90 bp | GCGTTCGTAAACTGTGTCACAAGTCCAAGCCAGCGGACTCAGAGACTTCTAGCTGGTCCAGCTGAGGCTTaGCCATGCCTGGCAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: AFVNCVTSPSQRTQRLLAGPAEA*PCLAAG Trigger: TCCTGCTGCCAGGCATGGGCAAGCCTCAGCTGGACC...AGCTAGAAGTCTCTGAGTCCGCTGGCTTGGACTTGTGACACAGTTTACGAACGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR CCA 90 bp | ACAGGTTCCGAAGTGCAAAGCAAACACCAACTGCTGGCGCTAACAACCGCTCTCAGGCTTGCCCATGCCTaGCAGCAGGATGTAGGCGAG | + |
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Preference number: 4 (lower is better) Translates to: TGSEVQSKHQLLALTTALRLAHA*QQDVGE Trigger: CTCGCCTACATCCTGCTGCCAGGCATGGGCAAGCCT...GAGAGCGGTTGTTAGCGCCAGCAGTTGGTGTTTGCTTTGCACTTCGGAACCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR CAA 72 bp | CCAACTGCTGGCGCTAACAACCGCTCTCCTTTAAAGTaGGCTGCAGAAGTGCGGCGGCTGGGGAATGATGCT | + |
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Preference number: 4 (lower is better) Translates to: PTAGANNRSPLK*AAEVRRLGNDA Trigger: AGCATCATTCCCCAGCCGCCGCACTTCTGCAGCCAACTTTAAAGGAGAGCGGTTGTTAGCGCCAGCAGTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR CCA 90 bp | ATACAGGCCGGATTCGAGCTGGTCATTCACTGGTCAAGAAGAGATCCGGGCTGTAGATCTCTGCCATCTTaGAGCCCAGGTCGAGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: IQAGFELVIHWSRRDPGCRSLPS*SPGRAV Trigger: CACTGCTCGACCTGGGCTCCAAGATGGCAGAGATCT...ACAGCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCTGTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR CAA 72 bp | AATCTTAAGGTGAACTCAGCCTTGAGGGGAAACAGCTaGTGTACTTTCCACGCGTTCGTAAACTGTGTCACA | + |
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Preference number: 4 (lower is better) Translates to: NLKVNSALRGNS*CTFHAFVNCVT Trigger: TGTGACACAGTTTACGAACGCGTGGAAAGTACACAAGCTGTTTCCCCTCAAGGCTGAGTTCACCTTAAGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| 3UTR CAA 72 bp | CATACACACATTTACAATCTTAAGGTGAACTCAGCCTaGAGGGGAAACAGCTTGTGTACTTTCCACGCGTTC | + |
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Preference number: 4 (lower is better) Translates to: HTHIYNLKVNSA*RGNSLCTFHAF Trigger: GAACGCGTGGAAAGTACACAAGCTGTTTCCCCTCAAGGCTGAGTTCACCTTAAGATTGTAAATGTGTGTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS GCA 90 bp | GGCTGGGCCACGCGCTGCAGTTGCACGGGATCATGTAGCCGGGGTTaGCGGGACTGGGGTGCGAGTGCGTGTGCCCTCCGGCGGCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: GWATRCSCTGSCSRG*RDWGASACALRRPP Trigger: CGGCGGCCGCCGGAGGGCACACGCACTCGCACCCCAGTCCCGGCAACCCCGGCTACATGATCCCGTGCAACTGCAGCGCGTGGCCCAGCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS CCA 90 bp | ACGCGTACGGCAGGCCGGACGACGACGACGAGATCTCTGCCATCTTaGAGCCCAGGTCGAGCAGTGAGTAGGGGCTGCCAGCGGCGGCGG | + |
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Preference number: 5 (lower is better) Translates to: TRTAGRTTTTRSLPS*SPGRAVSRGCQRRR Trigger: CCGCCGCCGCTGGCAGCCCCTACTCACTGCTCGACCTGGGCTCCAAGATGGCAGAGATCTCGTCGTCGTCGTCCGGCCTGCCGTACGCGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR CAA 90 bp | CCCGGACTGGCATCTCCGCCTCTGCCTGACACCTATACATCTATGTACATACAAGCGTTCATGGGCCGCTaGACGTGGTCCACAGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: PGLASPPLPDTYTSMYIQAFMGR*TWSTGL Trigger: CAAGCCTGTGGACCACGTCAAGCGGCCCATGAACGC...TTGTATGTACATAGATGTATAGGTGTCAGGCAGAGGCGGAGATGCCAGTCCGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR CAA 90 bp | TACAGGCCGGATTCGAGCTGGTCATTCACTGGTCAAGAAGAGATCCGGGCTGTGGAGATCTCTGCCATCTaGGAGCCCAGGTCGAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: YRPDSSWSFTGQEEIRAVEISAI*EPRSSS Trigger: ACTGCTCGACCTGGGCTCCAAGATGGCAGAGATCTC...CACAGCCCGGATCTCTTCTTGACCAGTGAATGACCAGCTCGAATCCGGCCTGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS-3UTR CAA 90 bp | CTGCAGAGGCCTACAGAATTCAACAGTACAATCAGAGTAAGGCTGCCCAGAGCCACGGGGAAGGCGAACTaGTCCTTTTTGAGCAGCGTC | + |
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Preference number: 5 (lower is better) Translates to: LQRPTEFNSTIRVRLPRATGKAN*SFLSSV Trigger: GACGCTGCTCAAAAAGGACAAGTTCGCCTTCCCCGT...GGCTCTGGGCAGCCTTACTCTGATTGTACTGTTGAATTCTGTAGGCCTCTGCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS GCA 72 bp | CCATCTTGGAGCCCAGGTCGAGCAGTGAGTAGGGGCTaGCAGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAG | + |
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Preference number: 6 (lower is better) Translates to: PSWSPGRAVSRG*QRRRRQRRRRQ Trigger: CTGCCGCCGCCGCCGCTGCCGCCGCCGCCGCTGGCAGCCCCTACTCACTGCTCGACCTGGGCTCCAAGATGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS GCA 72 bp | GCGGCTGCAGCCCCGGGCTGGGCCACGCGCTGCAGTTaGACGGGATCATGTAGCCGGGGTTGCCGGGACTGG | + |
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Preference number: 6 (lower is better) Translates to: AAAAPGWATRCS*TGSCSRGCRDW Trigger: CCAGTCCCGGCAACCCCGGCTACATGATCCCGTGCAACTGCAGCGCGTGGCCCAGCCCGGGGCTGCAGCCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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| CDS GCA 72 bp | ACGCGCTGCAGTTGCACGGGATCATGTAGCCGGGGTTaGCGGGACTGGGGTGCGAGTGCGTGTGCCCTCCGG | + |
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Preference number: 6 (lower is better) Translates to: TRCSCTGSCSRG*RDWGASACALR Trigger: CCGGAGGGCACACGCACTCGCACCCCAGTCCCGGCAACCCCGGCTACATGATCCCGTGCAACTGCAGCGCGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170662.2 |
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