Pregenerated sensors for SOX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074637Ensembl transcript IDs: ENSMUST00000099151.6
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAGCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAACTCCAGATCTATACATaGTCCGATTCCCCCGCCCTC | + |
|
Preference number: 2 (lower is better) Translates to: KLQNQNPARTLSSKNIGKLQIYT*SDSPAL Trigger: GAGGGCGGGGGAATCGGACCATGTATAGATCTGGAG...TTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| 3UTR-3UTR GCA 90 bp | AAGCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAAACTGGTAAAGACTTTTaGGAACTCCCTGCGAAGCGC | + |
|
Preference number: 2 (lower is better) Translates to: KLQNQNPARTLSSKNIGKTGKDF*ELPAKR Trigger: GCGCTTCGCAGGGAGTTCGCAAAAGTCTTTACCAGT...TTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| 3UTR-3UTR TCA 90 bp | AAGCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAATCCCTTGTATCTCTTTaGAAATCTCTCCCCTTCTCC | + |
|
Preference number: 2 (lower is better) Translates to: KLQNQNPARTLSSKNIGKSLVSL*KSLPFS Trigger: GGAGAAGGGGAGAGATTTTCAAAGAGATACAAGGGA...TTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| 3UTR-3UTR GCA 90 bp | GCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAATTCGGCATCACGGTTTTTaGGTTAATTTGGATGGGATT | + |
|
Preference number: 2 (lower is better) Translates to: AAESKPSKNPFLEKYWQIRHHGF*VNLDGI Trigger: AATCCCATCCAAATTAACGCAAAAACCGTGATGCCG...AATTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| 3UTR GCA 72 bp | ACTCCTTCCTTGTTTGTAACGGTCCTAAATTTAAGCTaGAGAATCAAAACCCAGCAAGAACCCTTTCCTCGA | + |
|
Preference number: 3 (lower is better) Translates to: TPSLFVTVLNLS*RIKTQQEPFPR Trigger: TCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTTAAATTTAGGACCGTTACAAACAAGGAAGGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| 3UTR-3UTR CAA 90 bp | AAGCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAACCCCTCCCAATTCCCTaGTATCTCTTTGAAAATCTC | + |
|
Preference number: 3 (lower is better) Translates to: KLQNQNPARTLSSKNIGKPLPIP*YLFENL Trigger: GAGATTTTCAAAGAGATACAAGGGAATTGGGAGGGG...TTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| 3UTR-3UTR CAA 90 bp | AAGCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAAGGTTTTTGCGTTAATTaGGATGGGATTGGTGGTTTT | + |
|
Preference number: 3 (lower is better) Translates to: KLQNQNPARTLSSKNIGKGFCVN*DGIGGF Trigger: AAAACCACCAATCCCATCCAAATTAACGCAAAAACC...TTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR GCA 90 bp | CTCCAGATCTATACATGGTCCGATTCCCCCGCCCTCCCCGCCGCCCTCAGGTTTCAACCCCGCTCGCCATaGTGTTCCCGCCGGGGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: LQIYTWSDSPALPAALRFQPRSP*CSRRGP Trigger: TGGCCCCCGGCGGGAACAGCATGGCGAGCGGGGTTG...AAACCTGAGGGCGGCGGGGAGGGCGGGGGAATCGGACCATGTATAGATCTGGAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR TCA 90 bp | CTCCAGATCTATACATGGTCCGATTCCCCCGCCCTCCCCGCCGCCCTCAGGTTTAGCTGGCCTCGGACTTaGCCACAGAGCCCATGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: LQIYTWSDSPALPAALRFSWPRT*PQSPWS Trigger: GCTCCATGGGCTCTGTGGTCAAGTCCGAGGCCAGCT...AAACCTGAGGGCGGCGGGGAGGGCGGGGGAATCGGACCATGTATAGATCTGGAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR CCA 90 bp | CTCCAGATCTATACATGGTCCGATTCCCCCGCCCTCCCCGCCGCCCTCAGGTTTAGGACATGCTGTAGGTaGGCGAGCCGTTCATGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: LQIYTWSDSPALPAALRFRTCCR*ASRSCR Trigger: CCTACATGAACGGCTCGCCCACCTACAGCATGTCCT...AAACCTGAGGGCGGCGGGGAGGGCGGGGGAATCGGACCATGTATAGATCTGGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR TCA 90 bp | GCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAATTCCGCGCCGTGAGCGTTaGGGCCCGGGTGCTGCGGGT | + |
|
Preference number: 4 (lower is better) Translates to: AAESKPSKNPFLEKYWQIPRRER*GPGAAG Trigger: ACCCGCAGCACCCGGGCCTCAACGCTCACGGCGCGG...AATTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR GCA 90 bp | AAGCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAAGCGCCATACCGGGGGTaGCCTGCTGCGAGTAGGACA | + |
|
Preference number: 4 (lower is better) Translates to: KLQNQNPARTLSSKNIGKAPYRG*PAASRT Trigger: TGTCCTACTCGCAGCAGGGCACCCCCGGTATGGCGC...TTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR CCA 90 bp | GCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAATTCCATGTGCAGTCTACTaGGCGCAGCGGGCTCCGGCA | + |
|
Preference number: 4 (lower is better) Translates to: AAESKPSKNPFLEKYWQIPCAVY*AQRAPA Trigger: TGCCGGAGCCCGCTGCGCCCAGTAGACTGCACATGG...AATTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR TCA 90 bp | AAGCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAACGTTCATGGGCCTCTTaGCGCGGTCCGGGCTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KLQNQNPARTLSSKNIGKRSWAS*RGPGCS Trigger: AGAACAGCCCGGACCGCGTCAAGAGGCCCATGAACG...TTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR TCA 90 bp | AAGCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAAACTTATCCTTCTTCATaGGCGTCTTGGTTTTCCGCC | + |
|
Preference number: 4 (lower is better) Translates to: KLQNQNPARTLSSKNIGKTYPSS*ASWFSA Trigger: GGCGGAAAACCAAGACGCTCATGAAGAAGGATAAGT...TTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR CAA 90 bp | GCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAATTGCGTTCATGGGCCTCTaGACGCGGTCCGGGCTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: AAESKPSKNPFLEKYWQIAFMGL*TRSGLF Trigger: GAACAGCCCGGACCGCGTCAAGAGGCCCATGAACGC...AATTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR CAA 90 bp | AAGCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAAGTAGCGGTGCATCGGTaGCATCTGTGCCGCGCCGTG | + |
|
Preference number: 5 (lower is better) Translates to: KLQNQNPARTLSSKNIGKVAVHR*HLCRAV Trigger: CACGGCGCGGCACAGATGCAACCGATGCACCGCTAC...TTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR CAA 90 bp | AAGCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAAGAGCTGGCCTCGGACTaGACCACAGAGCCCATGGAG | + |
|
Preference number: 5 (lower is better) Translates to: KLQNQNPARTLSSKNIGKELASD*TTEPME Trigger: CTCCATGGGCTCTGTGGTCAAGTCCGAGGCCAGCTC...TTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS-3UTR CAA 90 bp | GCTGCAGAATCAAAACCCAGCAAGAACCCTTTCCTCGAAAAATATTGGCAAATTTTCTTCATGAGCGTCTaGGTTTTCCGCCGCGGCCGG | + |
|
Preference number: 5 (lower is better) Translates to: AAESKPSKNPFLEKYWQIFFMSV*VFRRGR Trigger: CCGGCCGCGGCGGAAAACCAAGACGCTCATGAAGAA...AATTTGCCAATATTTTTCGAGGAAAGGGTTCTTGCTGGGTTTTGATTCTGCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS CAA 72 bp | ATGGGCCTCTTGACGCGGTCCGGGCTGTTCTTCTGGTaGCCGCCGGTCGCCGCCGCCGTGGCGTTGCCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: MGLLTRSGLFFW*PPVAAAVALPP Trigger: AGGAGGCAACGCCACGGCGGCGGCGACCGGCGGCAACCAGAAGAACAGCCCGGACCGCGTCAAGAGGCCCAT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||
| CDS CCA 72 bp | TTCATGGGCCTCTTGACGCGGTCCGGGCTGTTCTTCTaGTTGCCGCCGGTCGCCGCCGCCGTGGCGTTGCCT | + |
|
Preference number: 6 (lower is better) Translates to: FMGLLTRSGLFF*LPPVAAAVALP Trigger: AGGCAACGCCACGGCGGCGGCGACCGGCGGCAACCAGAAGAACAGCCCGGACCGCGTCAAGAGGCCCATGAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099151.6 |
||