Pregenerated sensors for SOX18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046470Ensembl transcript IDs: ENSMUST00000054491.6
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGGAAGGCCCAAAGCACAGGAACCCCCAGAAGGAGGTGTGTAAATaGGGAGGCGACAGAAATGGCATCTTTAGGCCACCAGCTCTAAAG | + |
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Preference number: 1 (lower is better) Translates to: REGPKHRNPQKEVCK*GGDRNGIFRPPALK Trigger: CTTTAGAGCTGGTGGCCTAAAGATGCCATTTCTGTCGCCTCCTCATTTACACACCTCCTTCTGGGGGTTCCTGTGCTTTGGGCCTTCCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| 3UTR-3UTR GCA 90 bp | ATGATTCAAAAACAACCCTGGCAGAGGCAGCTAGCACGTCCAGGGCCTGAGGTTACCCTAACATACATATaGGAAAGGAAGGGAGCAGGC | + |
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Preference number: 2 (lower is better) Translates to: MIQKQPWQRQLARPGPEVTLTYI*ERKGAG Trigger: GCCTGCTCCCTTCCTTTCGCATATGTATGTTAGGGT...AACCTCAGGCCCTGGACGTGCTAGCTGCCTCTGCCAGGGTTGTTTTTGAATCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| 3UTR CCA 72 bp | ATATGCGAAAGGAAGGGAGCAGGCAACTCTGCCACTTaGCCACATGCAGAAGCGGTGGAGGGCAAGGACAGT | + |
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Preference number: 3 (lower is better) Translates to: ICERKGAGNSAT*PHAEAVEGKDS Trigger: ACTGTCCTTGCCCTCCACCGCTTCTGCATGTGGCCAAGTGGCAGAGTTGCCTGCTCCCTTCCTTTCGCATAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| 3UTR GCA 72 bp | AACATACATATGCGAAAGGAAGGGAGCAGGCAACTCTaGCACTTGGCCACATGCAGAAGCGGTGGAGGGCAA | + |
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Preference number: 3 (lower is better) Translates to: NIHMRKEGSRQL*HLATCRSGGGQ Trigger: TTGCCCTCCACCGCTTCTGCATGTGGCCAAGTGGCAGAGTTGCCTGCTCCCTTCCTTTCGCATATGTATGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| 3UTR TCA 72 bp | CCAAAGCACAGGAACCCCCAGAAGGAGGTGTGTAAATaGGGAGGCGACAGAAATGGCATCTTTAGGCCACCA | + |
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Preference number: 3 (lower is better) Translates to: PKHRNPQKEVCK*GGDRNGIFRPP Trigger: TGGTGGCCTAAAGATGCCATTTCTGTCGCCTCCTCATTTACACACCTCCTTCTGGGGGTTCCTGTGCTTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR TCA 90 bp | CCCTGGCAGAGGCAGCTAGCACGTCCAGGGCCTGAGGTTCCTAGGGAAGGCCCATGGGCGAGACGTTGGTaGCAGGGAGGCCGCGCGCCT | + |
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Preference number: 4 (lower is better) Translates to: PWQRQLARPGPEVPREGPWARRW*QGGRAP Trigger: AGGCGCGCGGCCTCCCTGTCACCAACGTCTCGCCCA...TGGGCCTTCCCTAGGAACCTCAGGCCCTGGACGTGCTAGCTGCCTCTGCCAGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR GCA 90 bp | CCCTGGCAGAGGCAGCTAGCACGTCCAGGGCCTGAGGTTCCTAGGGAAGGCCCACTCAGGGGCATAGGGTaGCCGGAAAGCCCGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: PWQRQLARPGPEVPREGPLRGIG*PESPQS Trigger: GCTCTGCGGGCTTTCCGGGCACCCTATGCCCCTGAG...TGGGCCTTCCCTAGGAACCTCAGGCCCTGGACGTGCTAGCTGCCTCTGCCAGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR GCA 90 bp | CTAGGGAAGGCCCAAAGCACAGGAACCCCCAGAAGGAGGTGTGTAAATGAGGAGGATTCCAGGGGCCCATaGACAGTCGCGGCGGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: LGKAQSTGTPRRRCVNEEDSRGP*TVAAGG Trigger: CCCTCCCGCCGCGACTGTGCATGGGCCCCTGGAATC...CTCCTCATTTACACACCTCCTTCTGGGGGTTCCTGTGCTTTGGGCCTTCCCTAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR TCA 90 bp | CTAGGGAAGGCCCAAAGCACAGGAACCCCCAGAAGGAGGTGTGTAAATGAGGAGAAAGCCATAGCGCCCTaGTTCGGGGCTGCGCGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LGKAQSTGTPRRRCVNEEKAIAP*FGAARW Trigger: CCACCGCGCAGCCCCGAATCAGGGCGCTATGGCTTT...CTCCTCATTTACACACCTCCTTCTGGGGGTTCCTGTGCTTTGGGCCTTCCCTAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR GCA 90 bp | ATATGCGAAAGGAAGGGAGCAGGCAACTCTGCCACTTGGCCACATGCAGAAGCGGGATGGTCGCGCAAGTaGTGCACACGCAGCCGTTCG | + |
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Preference number: 4 (lower is better) Translates to: ICERKGAGNSATWPHAEAGWSRK*CTRSRS Trigger: CGAACGGCTGCGTGTGCAGCACTTGCGCGACCATCC...CGCTTCTGCATGTGGCCAAGTGGCAGAGTTGCCTGCTCCCTTCCTTTCGCATAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR CCA 90 bp | CTAGGGAAGGCCCAAAGCACAGGAACCCCCAGAAGGAGGTGTGTAAATGAGGAGGAGGCTGCTCTCTTCTaGACAGGACATGGCGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: LGKAQSTGTPRRRCVNEEEAALF*TGHGAR Trigger: CCGCGCGCCATGTCCTGTCCAGAAGAGAGCAGCCTC...CTCCTCATTTACACACCTCCTTCTGGGGGTTCCTGTGCTTTGGGCCTTCCCTAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR CCA 90 bp | CATATGCGAAAGGAAGGGAGCAGGCAACTCTGCCACTTGGCCACATGCAGAAGCGTGGTGACAGAGGATTaGGAAACGGGCCCGGAGTGC | + |
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Preference number: 4 (lower is better) Translates to: HMRKEGSRQLCHLATCRSVVTED*ETGPEC Trigger: GCACTCCGGGCCCGTTTCCCAATCCTCTGTCACCAC...GCTTCTGCATGTGGCCAAGTGGCAGAGTTGCCTGCTCCCTTCCTTTCGCATATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| 3UTR CAA 72 bp | CATATGCGAAAGGAAGGGAGCAGGCAACTCTGCCACTaGGCCACATGCAGAAGCGGTGGAGGGCAAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: HMRKEGSRQLCH*ATCRSGGGQGQ Trigger: CTGTCCTTGCCCTCCACCGCTTCTGCATGTGGCCAAGTGGCAGAGTTGCCTGCTCCCTTCCTTTCGCATATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR GCA 90 bp | CTAGGGAAGGCCCAAAGCACAGGAACCCCCAGAAGGAGGTGTGTAAATGAGGAGGCTCCTTCCACGCTTTaGCCAGCATCTTGCTCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LGKAQSTGTPRRRCVNEEAPSTL*PASCSV Trigger: TACTGAGCAAGATGCTGGGCAAAGCGTGGAAGGAGC...CTCCTCATTTACACACCTCCTTCTGGGGGTTCCTGTGCTTTGGGCCTTCCCTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR CCA 90 bp | AGCAGAAAAGAATTAGATGATTCAAAAACAACCCTGGCAGAGGCAGCTAGCACGGCGAGCGCTCGGGCGTaGGTAGCCCCAAGCCATCGA | + |
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Preference number: 4 (lower is better) Translates to: SRKELDDSKTTLAEAASTASARA*VAPSHR Trigger: TCGATGGCTTGGGGCTACCCACGCCCGAGCGCTCGC...CGTGCTAGCTGCCTCTGCCAGGGTTGTTTTTGAATCATCTAATTCTTTTCTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR CCA 90 bp | CCAGCTCTAAAGGCTGTTGCATACCCTAACATACATATGCGAAAGGAAGGGAGCCGCGCGGACCTAGTTTaGCCAGTGCCACGTGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: PALKAVAYPNIHMRKEGSRADLV*PVPRGR Trigger: CCTACCACGTGGCACTGGCCAAACTAGGTCCGCGCG...GCTCCCTTCCTTTCGCATATGTATGTTAGGGTATGCAACAGCCTTTAGAGCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR GCA 90 bp | AGCAGAAAAGAATTAGATGATTCAAAAACAACCCTGGCAGAGGCAGCTAGCACGTGGTCGCGCAAGTGCTaGACACGCAGCCGTTCGGCC | + |
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Preference number: 4 (lower is better) Translates to: SRKELDDSKTTLAEAASTWSRKC*TRSRSA Trigger: GGCCGAACGGCTGCGTGTGCAGCACTTGCGCGACCA...CGTGCTAGCTGCCTCTGCCAGGGTTGTTTTTGAATCATCTAATTCTTTTCTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR GCA 90 bp | CTAAAGGCTGTTGCATACCCTAACATACATATGCGAAAGGAAGGGAGCAGGCAAGCGGTAGGCTCCAGTTaGTCTGTGCCCTCAAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: LKAVAYPNIHMRKEGSRQAVGSS*SVPSRD Trigger: GTCTCTTGAGGGCACAGAGCAACTGGAGCCTACCGC...TTGCCTGCTCCCTTCCTTTCGCATATGTATGTTAGGGTATGCAACAGCCTTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR TCA 90 bp | AGCAGAAAAGAATTAGATGATTCAAAAACAACCCTGGCAGAGGCAGCTAGCACGGGACTCAGGTGGTGGTaGCAGAGGATTGGGAAACGG | + |
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Preference number: 4 (lower is better) Translates to: SRKELDDSKTTLAEAASTGLRWW*QRIGKR Trigger: CCGTTTCCCAATCCTCTGTCACCACCACCTGAGTCC...CGTGCTAGCTGCCTCTGCCAGGGTTGTTTTTGAATCATCTAATTCTTTTCTGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR TCA 90 bp | CCAGCTCTAAAGGCTGTTGCATACCCTAACATACATATGCGAAAGGAAGGGAGCGAGTCCGGCTGCAATTaGGATACTGGTCAAATTCGG | + |
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Preference number: 4 (lower is better) Translates to: PALKAVAYPNIHMRKEGSESGCN*DTGQIR Trigger: CCGAATTTGACCAGTATCTCAATTGCAGCCGGACTC...GCTCCCTTCCTTTCGCATATGTATGTTAGGGTATGCAACAGCCTTTAGAGCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR CCA 90 bp | CTAAAGGCTGTTGCATACCCTAACATACATATGCGAAAGGAAGGGAGCAGGCAACTGCAATTGAGATACTaGTCAAATTCGGTGAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: LKAVAYPNIHMRKEGSRQLQLRY*SNSVRS Trigger: GGACCTCACCGAATTTGACCAGTATCTCAATTGCAG...TTGCCTGCTCCCTTCCTTTCGCATATGTATGTTAGGGTATGCAACAGCCTTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 90 bp | AGGGAGGCCGCGCGCCTCAGCAGCGGCCCCGATTCCAGGGGCCCATaGACAGTCGCGGCGGGAGGGCGGGTCGTCCTGTGCGCCGTAGCC | + |
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Preference number: 5 (lower is better) Translates to: REAARLSSGPDSRGP*TVAAGGRVVLCAVA Trigger: GGCTACGGCGCACAGGACGACCCGCCCTCCCGCCGCGACTGTGCATGGGCCCCTGGAATCGGGGCCGCTGCTGAGGCGCGCGGCCTCCCT 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS TCA 90 bp | GCGGAAGGCTGGACGGGGAGGCGGGCGAGGTGGGCGAGACGTTGGTaGCAGGGAGGCCGCGCGCCTCAGCAGCGGCCCCGATTCCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: AEGWTGRRARWARRW*QGGRAPQQRPRFQG Trigger: CCCCTGGAATCGGGGCCGCTGCTGAGGCGCGCGGCCTCCCTGTCACCAACGTCTCGCCCACCTCGCCCGCCTCCCCGTCCAGCCTTCCGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 90 bp | TTTGGCGCTCTCCGCGGCCAAAGCCATAGCGCCCTGATTCGGGGCTaGGCGGTGGGCTCCGCGGAAGGCTGGACGGGGAGGCGGGCGAGG | + |
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Preference number: 5 (lower is better) Translates to: FGALRGQSHSALIRG*AVGSAEGWTGRRAR Trigger: CCTCGCCCGCCTCCCCGTCCAGCCTTCCGCGGAGCCCACCGCGCAGCCCCGAATCAGGGCGCTATGGCTTTGGCCGCGGAGAGCGCCAAA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS TCA 90 bp | CTCGTCGGCAGTTTGGCGCTCTCCGCGGCCAAAGCCATAGCGCCCTaGTTCGGGGCTGCGCGGTGGGCTCCGCGGAAGGCTGGACGGGGA | + |
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Preference number: 5 (lower is better) Translates to: LVGSLALSAAKAIAP*FGAARWAPRKAGRG Trigger: TCCCCGTCCAGCCTTCCGCGGAGCCCACCGCGCAGCCCCGAATCAGGGCGCTATGGCTTTGGCCGCGGAGAGCGCCAAACTGCCGACGAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 90 bp | CCCGTAGCAGAAGCTCGGGTCCCGTGCCAGCTCAGGGGCATAGGGTaGCCGGAAAGCCCGCAGAGCGCAGTCCTCGGGCGCCAAAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: PVAEARVPCQLRGIG*PESPQSAVLGRQRR Trigger: CCGCCTTTGGCGCCCGAGGACTGCGCTCTGCGGGCTTTCCGGGCACCCTATGCCCCTGAGCTGGCACGGGACCCGAGCTTCTGCTACGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CCA 90 bp | TGCCCGGAAAGCCCGCAGAGCGCAGTCCTCGGGCGCCAAAGGCGGTaGGAAGAAGGAGGCCTCGCCAGGCTCCAGGCCGTCCAGAGGCGA | + |
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Preference number: 5 (lower is better) Translates to: CPESPQSAVLGRQRR*EEGGLARLQAVQRR Trigger: TCGCCTCTGGACGGCCTGGAGCCTGGCGAGGCCTCCTTCTTCCCACCGCCTTTGGCGCCCGAGGACTGCGCTCTGCGGGCTTTCCGGGCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CCA 90 bp | AAACGGGCCCGGAGTGCCCAGGGTGCCATAGTAGAGACCTGCGAGTaGCGCGGCAGGCGGCGCTGTCCTGAGCGCTTCAGCCAGGGGCGC | + |
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Preference number: 5 (lower is better) Translates to: KRARSAQGAIVETCE*RGRRRCPERFSQGR Trigger: GCGCCCCTGGCTGAAGCGCTCAGGACAGCGCCGCCTGCCGCGCCACTCGCAGGTCTCTACTATGGCACCCTGGGCACTCCGGGCCCGTTT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS TCA 90 bp | TGCCATAGTAGAGACCTGCGAGTGGCGCGGCAGGCGGCGCTGTCCTaGGCGCTTCAGCCAGGGGCGCCCCGTAGCAGAAGCTCGGGTCCC | + |
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Preference number: 5 (lower is better) Translates to: CHSRDLRVARQAALS*ALQPGAPRSRSSGP Trigger: GGGACCCGAGCTTCTGCTACGGGGCGCCCCTGGCTGAAGCGCTCAGGACAGCGCCGCCTGCCGCGCCACTCGCAGGTCTCTACTATGGCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CCA 90 bp | AGGCCTCGCCAGGCTCCAGGCCGTCCAGAGGCGAGCGCTCGGGCGTaGGTAGCCCCAAGCCATCGAACTCCGCACCCAGAGTGGGTAGCT | + |
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Preference number: 5 (lower is better) Translates to: RPRQAPGRPEASARA*VAPSHRTPHPEWVA Trigger: AGCTACCCACTCTGGGTGCGGAGTTCGATGGCTTGGGGCTACCCACGCCCGAGCGCTCGCCTCTGGACGGCCTGGAGCCTGGCGAGGCCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 90 bp | ATTGGGAAACGGGCCCGGAGTGCCCAGGGTGCCATAGTAGAGACCTaGGAGTGGCGCGGCAGGCGGCGCTGTCCTGAGCGCTTCAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: IGKRARSAQGAIVET*EWRGRRRCPERFSQ Trigger: CTGGCTGAAGCGCTCAGGACAGCGCCGCCTGCCGCGCCACTCGCAGGTCTCTACTATGGCACCCTGGGCACTCCGGGCCCGTTTCCCAAT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 90 bp | GTGGTGGTGACAGAGGATTGGGAAACGGGCCCGGAGTGCCCAGGGTaGCATAGTAGAGACCTGCGAGTGGCGCGGCAGGCGGCGCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: VVVTEDWETGPECPG*HSRDLRVARQAALS Trigger: GGACAGCGCCGCCTGCCGCGCCACTCGCAGGTCTCTACTATGGCACCCTGGGCACTCCGGGCCCGTTTCCCAATCCTCTGTCACCACCAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CCA 90 bp | GCTCGGGCGTGGGTAGCCCCAAGCCATCGAACTCCGCACCCAGAGTaGGTAGCTCGCGGAAGGAGCGAGCTGACCCTGACGCTGCAGCGA | + |
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Preference number: 5 (lower is better) Translates to: ARAWVAPSHRTPHPE*VARGRSELTLTLQR Trigger: TCGCTGCAGCGTCAGGGTCAGCTCGCTCCTTCCGCGAGCTACCCACTCTGGGTGCGGAGTTCGATGGCTTGGGGCTACCCACGCCCGAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR CAA 90 bp | GCACGTCCAGGGCCTGAGGTTCCTAGGGAAGGCCCAAAGCACAGGAACCCCCAGGGTGGTGACAGAGGATaGGGAAACGGGCCCGGAGTG | + |
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Preference number: 5 (lower is better) Translates to: ARPGPEVPREGPKHRNPQGGDRG*GNGPGV Trigger: CACTCCGGGCCCGTTTCCCAATCCTCTGTCACCACC...CTGGGGGTTCCTGTGCTTTGGGCCTTCCCTAGGAACCTCAGGCCCTGGACGTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 90 bp | TCGGTGAGGTCCACATCGGCCCAAAGGTCGGCGGTAGGCTCCAGTTaGTCTGTGCCCTCAAGAGACGGGGACTCAGGTGGTGGTGACAGA | + |
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Preference number: 5 (lower is better) Translates to: SVRSTSAQRSAVGSS*SVPSRDGDSGGGDR Trigger: TCTGTCACCACCACCTGAGTCCCCGTCTCTTGAGGGCACAGAGCAACTGGAGCCTACCGCCGACCTTTGGGCCGATGTGGACCTCACCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CCA 90 bp | GGGAGTGTAGTGGCATCCGGTCGAGTCCGGCTGCAATTGAGATACTaGTCAAATTCGGTGAGGTCCACATCGGCCCAAAGGTCGGCGGTA | + |
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Preference number: 5 (lower is better) Translates to: GSVVASGRVRLQLRY*SNSVRSTSAQRSAV Trigger: TACCGCCGACCTTTGGGCCGATGTGGACCTCACCGAATTTGACCAGTATCTCAATTGCAGCCGGACTCGACCGGATGCCACTACACTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR CAA 90 bp | CCAGCTCTAAAGGCTGTTGCATACCCTAACATACATATGCGAAAGGAAGGGAGCCAGATCCGGATTTTGTaGCGCCAGTCGCTTGCGCTC | + |
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Preference number: 5 (lower is better) Translates to: PALKAVAYPNIHMRKEGSQIRIL*RQSLAL Trigger: GAGCGCAAGCGACTGGCGCAACAAAATCCGGATCTG...GCTCCCTTCCTTTCGCATATGTATGTTAGGGTATGCAACAGCCTTTAGAGCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR CAA 90 bp | CTAAAGGCTGTTGCATACCCTAACATACATATGCGAAAGGAAGGGAGCAGGCAATTGCGCGCCTGTTTTTaGCGGCGAGGCCGGTACTTG | + |
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Preference number: 5 (lower is better) Translates to: LKAVAYPNIHMRKEGSRQLRACF*RRGRYL Trigger: CAAGTACCGGCCTCGCCGCAAAAAACAGGCGCGCAA...TTGCCTGCTCCCTTCCTTTCGCATATGTATGTTAGGGTATGCAACAGCCTTTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR CAA 90 bp | CTAAAGGCTGTTGCATACCCTAACATACATATGCGAAAGGAAGGGAGCAGGCAAAGCTCCTTCCACGCTTaGCCCAGCATCTTGCTCAGT | + |
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Preference number: 5 (lower is better) Translates to: LKAVAYPNIHMRKEGSRQSSFHA*PSILLS Trigger: ACTGAGCAAGATGCTGGGCAAAGCGTGGAAGGAGCT...TTGCCTGCTCCCTTCCTTTCGCATATGTATGTTAGGGTATGCAACAGCCTTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS-3UTR CAA 90 bp | CTAAAGGCTGTTGCATACCCTAACATACATATGCGAAAGGAAGGGAGCAGGCAACGAGTCCGGCTGCAATaGAGATACTGGTCAAATTCG | + |
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Preference number: 5 (lower is better) Translates to: LKAVAYPNIHMRKEGSRQRVRLQ*RYWSNS Trigger: CGAATTTGACCAGTATCTCAATTGCAGCCGGACTCG...TTGCCTGCTCCCTTCCTTTCGCATATGTATGTTAGGGTATGCAACAGCCTTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 72 bp | GCGCGCCTCAGCAGCGGCCCCGATTCCAGGGGCCCATaGACAGTCGCGGCGGGAGGGCGGGTCGTCCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: ARLSSGPDSRGP*TVAAGGRVVLC Trigger: GCACAGGACGACCCGCCCTCCCGCCGCGACTGTGCATGGGCCCCTGGAATCGGGGCCGCTGCTGAGGCGCGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CAA 72 bp | AGGCTGGACGGGGAGGCGGGCGAGGTGGGCGAGACGTaGGTGACAGGGAGGCCGCGCGCCTCAGCAGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: RLDGEAGEVGET*VTGRPRASAAA Trigger: GGCCGCTGCTGAGGCGCGCGGCCTCCCTGTCACCAACGTCTCGCCCACCTCGCCCGCCTCCCCGTCCAGCCT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CAA 90 bp | CTCCGCGGAAGGCTGGACGGGGAGGCGGGCGAGGTGGGCGAGACGTaGGTGACAGGGAGGCCGCGCGCCTCAGCAGCGGCCCCGATTCCA | + |
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Preference number: 6 (lower is better) Translates to: LRGRLDGEAGEVGET*VTGRPRASAAAPIP Trigger: TGGAATCGGGGCCGCTGCTGAGGCGCGCGGCCTCCCTGTCACCAACGTCTCGCCCACCTCGCCCGCCTCCCCGTCCAGCCTTCCGCGGAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 72 bp | CTCCGCGGCCAAAGCCATAGCGCCCTGATTCGGGGCTaGGCGGTGGGCTCCGCGGAAGGCTGGACGGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: LRGQSHSALIRG*AVGSAEGWTGR Trigger: CCTCCCCGTCCAGCCTTCCGCGGAGCCCACCGCGCAGCCCCGAATCAGGGCGCTATGGCTTTGGCCGCGGAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 72 bp | CGGGCCCGGAGTGCCCAGGGTGCCATAGTAGAGACCTaGGAGTGGCGCGGCAGGCGGCGCTGTCCTGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: RARSAQGAIVET*EWRGRRRCPER Trigger: GCGCTCAGGACAGCGCCGCCTGCCGCGCCACTCGCAGGTCTCTACTATGGCACCCTGGGCACTCCGGGCCCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS TCA 72 bp | AGAGACCTGCGAGTGGCGCGGCAGGCGGCGCTGTCCTaGGCGCTTCAGCCAGGGGCGCCCCGTAGCAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: RDLRVARQAALS*ALQPGAPRSRS Trigger: GCTTCTGCTACGGGGCGCCCCTGGCTGAAGCGCTCAGGACAGCGCCGCCTGCCGCGCCACTCGCAGGTCTCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 72 bp | GAAGCTCGGGTCCCGTGCCAGCTCAGGGGCATAGGGTaGCCGGAAAGCCCGCAGAGCGCAGTCCTCGGGCGC | + |
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Preference number: 6 (lower is better) Translates to: EARVPCQLRGIG*PESPQSAVLGR Trigger: GCGCCCGAGGACTGCGCTCTGCGGGCTTTCCGGGCACCCTATGCCCCTGAGCTGGCACGGGACCCGAGCTTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CCA 72 bp | CAGGCTCCAGGCCGTCCAGAGGCGAGCGCTCGGGCGTaGGTAGCCCCAAGCCATCGAACTCCGCACCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: QAPGRPEASARA*VAPSHRTPHPE Trigger: CTCTGGGTGCGGAGTTCGATGGCTTGGGGCTACCCACGCCCGAGCGCTCGCCTCTGGACGGCCTGGAGCCTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS TCA 72 bp | AGTTTGGCGCTCTCCGCGGCCAAAGCCATAGCGCCCTaGTTCGGGGCTGCGCGGTGGGCTCCGCGGAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: SLALSAAKAIAP*FGAARWAPRKA Trigger: AGCCTTCCGCGGAGCCCACCGCGCAGCCCCGAATCAGGGCGCTATGGCTTTGGCCGCGGAGAGCGCCAAACT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS GCA 72 bp | ACAGAGGATTGGGAAACGGGCCCGGAGTGCCCAGGGTaGCATAGTAGAGACCTGCGAGTGGCGCGGCAGGCG | + |
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Preference number: 6 (lower is better) Translates to: TEDWETGPECPG*HSRDLRVARQA Trigger: CGCCTGCCGCGCCACTCGCAGGTCTCTACTATGGCACCCTGGGCACTCCGGGCCCGTTTCCCAATCCTCTGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CCA 72 bp | TGGGTAGCCCCAAGCCATCGAACTCCGCACCCAGAGTaGGTAGCTCGCGGAAGGAGCGAGCTGACCCTGACG | + |
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Preference number: 6 (lower is better) Translates to: WVAPSHRTPHPE*VARGRSELTLT Trigger: CGTCAGGGTCAGCTCGCTCCTTCCGCGAGCTACCCACTCTGGGTGCGGAGTTCGATGGCTTGGGGCTACCCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CCA 72 bp | GTGGCATCCGGTCGAGTCCGGCTGCAATTGAGATACTaGTCAAATTCGGTGAGGTCCACATCGGCCCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: VASGRVRLQLRY*SNSVRSTSAQR Trigger: CCTTTGGGCCGATGTGGACCTCACCGAATTTGACCAGTATCTCAATTGCAGCCGGACTCGACCGGATGCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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| CDS CAA 72 bp | GGGAGTGTAGTGGCATCCGGTCGAGTCCGGCTGCAATaGAGATACTGGTCAAATTCGGTGAGGTCCACATCG | + |
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Preference number: 6 (lower is better) Translates to: GSVVASGRVRLQ*RYWSNSVRSTS Trigger: CGATGTGGACCTCACCGAATTTGACCAGTATCTCAATTGCAGCCGGACTCGACCGGATGCCACTACACTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054491.6 |
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