Pregenerated sensors for SOX17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025902Ensembl transcript IDs: ENSMUST00000027035.10, ENSMUST00000116652.8, ENSMUST00000191647.2, ENSMUST00000191939.2, ENSMUST00000192650.6, ENSMUST00000192913.2, ENSMUST00000195555.2
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGTTTCTCTGACTCTAAAATTGTAGGAATTAAAGGCAAATTTTGTGGGAAGTGGCAATTATATCACATTTaGACACCCCGCTGTTTGTGT | + |
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Preference number: 2 (lower is better) Translates to: SFSDSKIVGIKGKFCGKWQLYHI*TPRCLC Trigger: ACACAAACAGCGGGGTGTTCAAATGTGATATAATTG...CCACTTCCCACAAAATTTGCCTTTAATTCCTACAATTTTAGAGTCAGAGAAACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
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| CDS-3UTR GCA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCTGCGCTGGGTGCTGCTaGTGCGGTGGCGGCGGCGGT | + |
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Preference number: 4 (lower is better) Translates to: RFQEVCNTASGPQVGSATCAGCC*CGGGGG Trigger: ACCGCCGCCGCCACCGCAGCAGCAGCACCCAGCGCA...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCAGCGGCTGCTGGGGTTaGGCGTGGAAACCGCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: RFQEVCNTASGPQVGSATSGCWG*AWKPRP Trigger: GGGGCGCGGTTTCCACGCGCAACCCCAGCAGCCGCT...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR TCA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCGGCTCCGTGGCTGTCTaGGAGGTTCACTCCGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: RFQEVCNTASGPQVGSATGSVAV*EVHSAV Trigger: GACTGCGGAGTGAACCTCTCAGACAGCCACGGAGCC...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCAAGAAAGCCGGGTCCTaGTCCACGCCATCCAGCGGG | + |
|
Preference number: 4 (lower is better) Translates to: RFQEVCNTASGPQVGSATKKAGS*STPSSG Trigger: CCCGCTGGATGGCGTGGAGCAGGACCCGGCTTTCTT...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCGGGATGTGTCCGGAGTaGGCAGAGGGTAGCCGTCGA | + |
|
Preference number: 4 (lower is better) Translates to: RFQEVCNTASGPQVGSATGMCPE*AEGSRR Trigger: TCGACGGCTACCCTCTGCCCACTCCGGACACATCCC...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCGCTCAGTGGGCTGGTTaGATTCCGTGCCATCCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: RFQEVCNTASGPQVGSATAQWAG*IPCHPG Trigger: GCCGGGATGGCACGGAATCCAACCAGCCCACTGAGC...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCTGCGCTTCACCTGCTTaGGCCGCCGCGGCCGGTACT | + |
|
Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLACASPA*AAAAGT Trigger: AGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCA...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCTTCATGCGCTTCACCTaGTTGCGCCGCCGCGGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLAFMRFT*LRRRGR Trigger: CCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCATGAA...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTTGCGCTGGGTGCTGCTaGTGCGGTGGCGGCGGCGGT | + |
|
Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLCAGCC*CGGGGG Trigger: ACCGCCGCCGCCACCGCAGCAGCAGCACCCAGCGCA...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCGCCGGGCAGTCCCCTaGCAGCGGGGCTGCAAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLARRAVP*QRGCKE Trigger: TTCTTTGCAGCCCCGCTGCCAGGGGACTGCCCGGCG...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCACACCACGGAGGAAATaGCTCCGTGGCTGTCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RFQEVCNTASGPQVGSATTPRRK*LRGCLR Trigger: TCTCAGACAGCCACGGAGCCATTTCCTCCGTGGTGT...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCTGCATAGTCCGAGACTaGAGCGTAAGTGTAGGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: RFQEVCNTASGPQVGSATCIVRD*SVSVGA Trigger: GGCACCTACACTTACGCTCCAGTCTCGGACTATGCA...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCGAGGAAATGGCTCCGTaGCTGTCTGAGAGGTTCACT | + |
|
Preference number: 4 (lower is better) Translates to: RFQEVCNTASGPQVGSATEEMAP*LSERFT Trigger: AGTGAACCTCTCAGACAGCCACGGAGCCATTTCCTC...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCTGCCTTGGGGAAAACTaGCTGGAGCCGGGCGCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLACLGEN*LEPGAG Trigger: GCCAGCGCCCGGCTCCAGCCAGTTTTCCCCAAGGCA...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192650.6 |
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| CDS-3UTR TCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCGGCTCCGTGGCTGTCTaGGAGGTTCACTCCGCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLAGSVAV*EVHSAV Trigger: GACTGCGGAGTGAACCTCTCAGACAGCCACGGAGCC...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTGAGCGTAAGTGTAGGTaGCGGCCGCCGGGCAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLERKCR*RPPGSP Trigger: GGGACTGCCCGGCGGCCGGCACCTACACTTACGCTC...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCGGGATGTGTCCGGAGTaGGCAGAGGGTAGCCGTCGA | + |
|
Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLAGMCPE*AEGSRR Trigger: TCGACGGCTACCCTCTGCCCACTCCGGACACATCCC...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCGCCGGGCAGTCCCCTaGCAGCGGGGCTGCAAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLRRAVP*QRGCKE Trigger: TTCTTTGCAGCCCCGCTGCCAGGGGACTGCCCGGCG...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCGCTCAGTGGGCTGGTTaGATTCCGTGCCATCCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLAAQWAG*IPCHPG Trigger: GCCGGGATGGCACGGAATCCAACCAGCCCACTGAGC...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCAAATGTCGGGGTAGTTaGAATAGTAGACCGCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: RFQEVCNTASGPQVGSATKCRGS*NSRPLS Trigger: GCTCAGCGGTCTACTATTGCAACTACCCCGACATTT...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTTTGGGGAAAACTGGCTaGAGCCGGGCGCTGGCGCCA | + |
|
Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLLGKTG*SRALAP Trigger: TGGCGCCAGCGCCCGGCTCCAGCCAGTTTTCCCCAA...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000192650.6 |
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| CDS-3UTR GCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTTCATCGGCCGCCGGATaGGAGACTCCGCTTTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLSSAAG*ETPLWL Trigger: GAGCCAAAGCGGAGTCTCGCATCCGGCGGCCGATGA...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
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| CDS-3UTR GCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCCTCCACCCGCTTCATaGGCTTCACCTGCTTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLPPPAS*ASPACA Trigger: GGCGCAAGCAGGTGAAGCGCATGAAGCGGGTGGAGG...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTAAGAAAGCCGGGTCCTaGTCCACGCCATCCAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLKKAGS*STPSSG Trigger: CCCGCTGGATGGCGTGGAGCAGGACCCGGCTTTCTT...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGCGGCTGCTGGGGTTaGGCGTGGAAACCGCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: QGNLKTKQLDAKDFLSASSGCWG*AWKPRP Trigger: GGGGCGCGGTTTCCACGCGCAACCCCAGCAGCCGCT...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTGGGATGTGTCCGGAGTaGGCAGAGGGTAGCCGTCGA | + |
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Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLGMCPE*AEGSRR Trigger: TCGACGGCTACCCTCTGCCCACTCCGGACACATCCC...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTGCTCAGTGGGCTGGTTaGATTCCGTGCCATCCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLAQWAG*IPCHPG Trigger: GCCGGGATGGCACGGAATCCAACCAGCCCACTGAGC...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCTGCGCTTCACCTGCTTaGGCCGCCGCGGCCGGTACT | + |
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Preference number: 4 (lower is better) Translates to: QGNLKTKQLDAKDFLSASCASPA*AAAAGT Trigger: AGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCA...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCTTCATGCGCTTCACCTaGTTGCGCCGCCGCGGCCGG | + |
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Preference number: 4 (lower is better) Translates to: QGNLKTKQLDAKDFLSASFMRFT*LRRRGR Trigger: CCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCATGAA...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCGAGCGTAAGTGTAGGTaGCGGCCGCCGGGCAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: QGNLKTKQLDAKDFLSASERKCR*RPPGSP Trigger: GGGACTGCCCGGCGGCCGGCACCTACACTTACGCTC...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCTGCATAGTCCGAGACTaGAGCGTAAGTGTAGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLACIVRD*SVSVGA Trigger: GGCACCTACACTTACGCTCCAGTCTCGGACTATGCA...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCGAGGAAATGGCTCCGTaGCTGTCTGAGAGGTTCACT | + |
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Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLAEEMAP*LSERFT Trigger: AGTGAACCTCTCAGACAGCCACGGAGCCATTTCCTC...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCTTCCAAGACTTGCCTTaGGGAAAACTGGCTGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLAFQDLP*GKLAGA Trigger: GGCTCCAGCCAGTTTTCCCCAAGGCAAGTCTTGGAA...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192650.6 |
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| CDS-3UTR GCA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCCCTCCACCCGCTTCATaGGCTTCACCTGCTTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: QGNLKTKQLDAKDFLSASPPPAS*ASPACA Trigger: GGCGCAAGCAGGTGAAGCGCATGAAGCGGGTGGAGG...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAAGAAAGCCGGGTCCTaGTCCACGCCATCCAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: QGNLKTKQLDAKDFLSASKKAGS*STPSSG Trigger: CCCGCTGGATGGCGTGGAGCAGGACCCGGCTTTCTT...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTACTGTTCGAATTCCGTaGGGTCCACCTCCCCTAGGA | + |
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Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLTVRIP*GPPPLG Trigger: TCCTAGGGGAGGTGGACCGCACGGAATTCGAACAGT...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTACACCACGGAGGAAATaGCTCCGTGGCTGTCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLTPRRK*LRGCLR Trigger: TCTCAGACAGCCACGGAGCCATTTCCTCCGTGGTGT...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | AGTTTCTCTGACTCTAAAATTGTAGGAATTAAAGGCAAATTTTGTGGGAAGTGGACAGGGGCCCAACCCTaGCATCACCGCGGGCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: SFSDSKIVGIKGKFCGKWTGAQP*HHRGLR Trigger: GCGCAGCCCGCGGTGATGGCAGGGTTGGGCCCCTGT...CCACTTCCCACAAAATTTGCCTTTAATTCCTACAATTTTAGAGTCAGAGAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
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| CDS-3UTR GCA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCAAATGTCGGGGTAGTTaGAATAGTAGACCGCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: DAKDFLSASRKCVTLLLAKCRGS*NSRPLS Trigger: GCTCAGCGGTCTACTATTGCAACTACCCCGACATTT...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR GCA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTACGCCTTCCAAGACTTaGCTTGGGGAAAACTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: QLDAKDFLSASRKCVTLLTPSKT*LGENWL Trigger: CAGCCAGTTTTCCCCAAGGCAAGTCTTGGAAGGCGT...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192650.6 |
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| CDS-3UTR GCA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCGCTGTGCCAACCGCTTaGGTTCGTCTTTGGCCCACA | + |
|
Preference number: 4 (lower is better) Translates to: QGNLKTKQLDAKDFLSASAVPTA*VRLWPT Trigger: TGTGGGCCAAAGACGAACGCAAGCGGTTGGCACAGC...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
||
| CDS-3UTR GCA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCGAAGGGCCGCTTCTCTaGCAAGGTCAACGCCTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: QGNLKTKQLDAKDFLSASEGPLL*QGQRLP Trigger: TGGAAGGCGTTGACCTTGGCAGAGAAGCGGCCCTTC...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 |
||
| CDS-3UTR GCA 90 bp | AGTTTCTCTGACTCTAAAATTGTAGGAATTAAAGGCAAATTTTGTGGGAAGTGGTGCGCTTCACCTGCTTaGGCCGCCGCGGCCGGTACT | + |
|
Preference number: 4 (lower is better) Translates to: SFSDSKIVGIKGKFCGKWCASPA*AAAAGT Trigger: AGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCA...CCACTTCCCACAAAATTTGCCTTTAATTCCTACAATTTTAGAGTCAGAGAAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
||
| CDS-3UTR GCA 90 bp | AGTTTCTCTGACTCTAAAATTGTAGGAATTAAAGGCAAATTTTGTGGGAAGTGGTTCATGCGCTTCACCTaGTTGCGCCGCCGCGGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: SFSDSKIVGIKGKFCGKWFMRFT*LRRRGR Trigger: CCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCATGAA...CCACTTCCCACAAAATTTGCCTTTAATTCCTACAATTTTAGAGTCAGAGAAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
||
| CDS-3UTR TCA 90 bp | AGTTTCTCTGACTCTAAAATTGTAGGAATTAAAGGCAAATTTTGTGGGAAGTGGGGCTCCGTGGCTGTCTaGGAGGTTCACTCCGCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: SFSDSKIVGIKGKFCGKWGSVAV*EVHSAV Trigger: GACTGCGGAGTGAACCTCTCAGACAGCCACGGAGCC...CCACTTCCCACAAAATTTGCCTTTAATTCCTACAATTTTAGAGTCAGAGAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
||
| CDS-3UTR GCA 90 bp | AGTTTCTCTGACTCTAAAATTGTAGGAATTAAAGGCAAATTTTGTGGGAAGTGGCCTCCACCCGCTTCATaGGCTTCACCTGCTTGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: SFSDSKIVGIKGKFCGKWPPPAS*ASPACA Trigger: GGCGCAAGCAGGTGAAGCGCATGAAGCGGGTGGAGG...CCACTTCCCACAAAATTTGCCTTTAATTCCTACAATTTTAGAGTCAGAGAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
||
| CDS-3UTR GCA 90 bp | AGTTTCTCTGACTCTAAAATTGTAGGAATTAAAGGCAAATTTTGTGGGAAGTGGGAAGGGCCGCTTCTCTaGCAAGGTCAACGCCTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SFSDSKIVGIKGKFCGKWEGPLL*QGQRLP Trigger: TGGAAGGCGTTGACCTTGGCAGAGAAGCGGCCCTTC...CCACTTCCCACAAAATTTGCCTTTAATTCCTACAATTTTAGAGTCAGAGAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
||
| CDS-3UTR GCA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAAATGTCGGGGTAGTTaGAATAGTAGACCGCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: QGNLKTKQLDAKDFLSASKCRGS*NSRPLS Trigger: GCTCAGCGGTCTACTATTGCAACTACCCCGACATTT...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
||
| CDS-3UTR GCA 90 bp | ATTTTTCTCAGAACAATTATATCACATTTGAACACCCCGCTGTTTGTGTTTAGGATCTGGGTTCTGCTGTaGCAACCGCTTGCGTTCGTC | + |
|
Preference number: 4 (lower is better) Translates to: IFLRTIISHLNTPLFVFRIWVLL*QPLAFV Trigger: GACGAACGCAAGCGGTTGGCACAGCAGAACCCAGAT...CCTAAACACAAACAGCGGGGTGTTCAAATGTGATATAATTGTTCTGAGAAAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
||
| CDS-3UTR GCA 90 bp | ATTTTTCTCAGAACAATTATATCACATTTGAACACCCCGCTGTTTGTGTTTAGGACTGTTCGAATTCCGTaGGGTCCACCTCCCCTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: IFLRTIISHLNTPLFVFRTVRIP*GPPPLG Trigger: TCCTAGGGGAGGTGGACCGCACGGAATTCGAACAGT...CCTAAACACAAACAGCGGGGTGTTCAAATGTGATATAATTGTTCTGAGAAAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
||
| CDS-3UTR CCA 90 bp | ATTTTTCTCAGAACAATTATATCACATTTGAACACCCCGCTGTTTGTGTTTAGGGAGGAAATGGCTCCGTaGCTGTCTGAGAGGTTCACT | + |
|
Preference number: 4 (lower is better) Translates to: IFLRTIISHLNTPLFVFREEMAP*LSERFT Trigger: AGTGAACCTCTCAGACAGCCACGGAGCCATTTCCTC...CCTAAACACAAACAGCGGGGTGTTCAAATGTGATATAATTGTTCTGAGAAAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
||
| CDS-3UTR GCA 90 bp | ATTTTTCTCAGAACAATTATATCACATTTGAACACCCCGCTGTTTGTGTTTAGGCTTAGCTCTGCGTTGTaGAGATCTGGGTTCTGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: IFLRTIISHLNTPLFVFRLSSAL*RSGFCC Trigger: ACAGCAGAACCCAGATCTGCACAACGCAGAGCTAAG...CCTAAACACAAACAGCGGGGTGTTCAAATGTGATATAATTGTTCTGAGAAAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
||
| CDS CCA 90 bp | CCATCCATGGCCACGCGGCCGCCCTCGGGACCAAGCGCGCCGGCCTaGGGCTCGACGAGAGCGTGCAGGAAGCCTCCCTCCACCCGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: PSMATRPPSGPSAPA*GSTRACRKPPSTRF Trigger: GAAGCGGGTGGAGGGAGGCTTCCTGCACGCTCTCGTCGAGCCCCAGGCCGGCGCGCTTGGTCCCGAGGGCGGCCGCGTGGCCATGGATGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
||
| CDS CCA 90 bp | AAGCCGGGTCCTGCTCCACGCCATCCAGCGGGGATGTGTCCGGAGTaGGCAGAGGGTAGCCGTCGAGCGCGGGAGCGCCCAGTCCCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: KPGPAPRHPAGMCPE*AEGSRRARERPVPG Trigger: GCCAGGGACTGGGCGCTCCCGCGCTCGACGGCTACCCTCTGCCCACTCCGGACACATCCCCGCTGGATGGCGTGGAGCAGGACCCGGCTT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
||
| CDS GCA 90 bp | TTGCAGCGGCTGCTGGGGTTGCGCGTGGAAACCGCGCCCCGCACTTaGGGCGGGCGAGCCCATCGCGCCGTAGTACAGGTGCAGAGCGCT | + |
|
Preference number: 5 (lower is better) Translates to: LQRLLGLRVETAPRT*GGRAHRAVVQVQSA Trigger: AGCGCTCTGCACCTGTACTACGGCGCGATGGGCTCGCCCGCCGCAAGTGCGGGGCGCGGTTTCCACGCGCAACCCCAGCAGCCGCTGCAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS GCA 90 bp | GTCCGGCCCCACTCGCATGGGGCCAGCGGGCGGCTCTACGGACACTaGATAGTCCGAGACTGGAGCGTAAGTGTAGGTGCCGGCCGCCGG | + |
|
Preference number: 5 (lower is better) Translates to: VRPHSHGASGRLYGH*IVRDWSVSVGAGRR Trigger: CCGGCGGCCGGCACCTACACTTACGCTCCAGTCTCGGACTATGCAGTGTCCGTAGAGCCGCCCGCTGGCCCCATGCGAGTGGGGCCGGAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
||
| CDS GCA 90 bp | TGCGGTCCACCTCCCCTAGGAGCTCAGTGGGCTGGTTGGATTCCGTaGCATCCCGGCAGGGCAGAGCCTCGGGAGGGGGCGAAGGTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: CGPPPLGAQWAGWIP*HPGRAEPREGAKVA Trigger: GGCAACCTTCGCCCCCTCCCGAGGCTCTGCCCTGCCGGGATGGCACGGAATCCAACCAGCCCACTGAGCTCCTAGGGGAGGTGGACCGCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CCA 90 bp | CGAGACTGGAGCGTAAGTGTAGGTGCCGGCCGCCGGGCAGTCCCCTaGCAGCGGGGCTGCAAAGAAAGCCGGGTCCTGCTCCACGCCATC | + |
|
Preference number: 5 (lower is better) Translates to: RDWSVSVGAGRRAVP*QRGCKESRVLLHAI Trigger: GATGGCGTGGAGCAGGACCCGGCTTTCTTTGCAGCCCCGCTGCCAGGGGACTGCCCGGCGGCCGGCACCTACACTTACGCTCCAGTCTCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
||
| CDS CCA 90 bp | CATGGGGCCAGCGGGCGGCTCTACGGACACTGCATAGTCCGAGACTaGAGCGTAAGTGTAGGTGCCGGCCGCCGGGCAGTCCCCTGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: HGASGRLYGHCIVRD*SVSVGAGRRAVPWQ Trigger: CTGCCAGGGGACTGCCCGGCGGCCGGCACCTACACTTACGCTCCAGTCTCGGACTATGCAGTGTCCGTAGAGCCGCCCGCTGGCCCCATG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CCA 90 bp | TGTTCGAATTCCGTGCGGTCCACCTCCCCTAGGAGCTCAGTGGGCTaGTTGGATTCCGTGCCATCCCGGCAGGGCAGAGCCTCGGGAGGG | + |
|
Preference number: 5 (lower is better) Translates to: CSNSVRSTSPRSSVG*LDSVPSRQGRASGG Trigger: CCCTCCCGAGGCTCTGCCCTGCCGGGATGGCACGGAATCCAACCAGCCCACTGAGCTCCTAGGGGAGGTGGACCGCACGGAATTCGAACA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS GCA 90 bp | GCTCTACGGACACTGCATAGTCCGAGACTGGAGCGTAAGTGTAGGTaGCGGCCGCCGGGCAGTCCCCTGGCAGCGGGGCTGCAAAGAAAG | + |
|
Preference number: 5 (lower is better) Translates to: ALRTLHSPRLERKCR*RPPGSPLAAGLQRK Trigger: CTTTCTTTGCAGCCCCGCTGCCAGGGGACTGCCCGGCGGCCGGCACCTACACTTACGCTCCAGTCTCGGACTATGCAGTGTCCGTAGAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CAA 90 bp | GACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCATGCGCTTCACCTGCTaGCGCCGCCGCGGCCGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: DAKDFLSASRKCVTLLLAMRFTC*RRRGRY Trigger: GTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCAT...GGCCAGAAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CCA 90 bp | CTTGGGGAAAACTGGCTGGAGCCGGGCGCTGGCGCCAAGACCTCTTaGGGAAATAGGAAGGCTGAAATTCAGATGTCTGGAGGTGCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: LGENWLEPGAGAKTS*GNRKAEIQMSGGAA Trigger: AGCAGCACCTCCAGACATCTGAATTTCAGCCTTCCTATTTCCCCAAGAGGTCTTGGCGCCAGCGCCCGGCTCCAGCCAGTTTTCCCCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000191647.2 ENSMUST00000192650.6 |
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| CDS-3UTR CAA 90 bp | CGCTTCCAGGAAGTGTGTAACACTGCTTCTGGCCCTCAGGTCGGGTCGGCAACCTTGCTTAGCTCTGCGTaGTGCAGATCTGGGTTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: RFQEVCNTASGPQVGSATLLSSA*CRSGFC Trigger: GCAGAACCCAGATCTGCACAACGCAGAGCTAAGCAA...GGTTGCCGACCCGACCTGAGGGCCAGAAGCAGTGTTACACACTTCCTGGAAGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027035.10 |
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| CDS-3UTR CAA 90 bp | CAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAGGAAGTGTGTAACACTGCTTATGCGCTTCACCTGCTaGCGCCGCCGCGGCCGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: QLDAKDFLSASRKCVTLLMRFTC*RRRGRY Trigger: GTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCAT...AAGCAGTGTTACACACTTCCTGGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS GCA 90 bp | CCATCTCGGGCTTATACACAAAGGGCAGATACTGTTCGAATTCCGTaGGGTCCACCTCCCCTAGGAGCTCAGTGGGCTGGTTGGATTCCG | + |
|
Preference number: 5 (lower is better) Translates to: PSRAYTQRADTVRIP*GPPPLGAQWAGWIP Trigger: CGGAATCCAACCAGCCCACTGAGCTCCTAGGGGAGGTGGACCGCACGGAATTCGAACAGTATCTGCCCTTTGTGTATAAGCCCGAGATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CAA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCATGCGCTTCACCTGCTaGCGCCGCCGCGGCCGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: QGNLKTKQLDAKDFLSASMRFTC*RRRGRY Trigger: GTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGCAT...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027035.10 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS-3UTR CAA 90 bp | CAAGGCAACTTAAAAACAAAACAGCTTGACGCTAAGGATTTCCTTAGCGCTTCCAACGCCTTCCAAGACTaGCCTTGGGGAAAACTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: QGNLKTKQLDAKDFLSASNAFQD*PWGKLA Trigger: AGCCAGTTTTCCCCAAGGCAAGTCTTGGAAGGCGTT...GGAAGCGCTAAGGAAATCCTTAGCGTCAAGCTGTTTTGTTTTTAAGTTGCCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000192650.6 |
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| CDS CCA 72 bp | GCCACGCGGCCGCCCTCGGGACCAAGCGCGCCGGCCTaGGGCTCGACGAGAGCGTGCAGGAAGCCTCCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: ATRPPSGPSAPA*GSTRACRKPPS Trigger: GGAGGGAGGCTTCCTGCACGCTCTCGTCGAGCCCCAGGCCGGCGCGCTTGGTCCCGAGGGCGGCCGCGTGGC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CAA 90 bp | TTCCGTGCCATCCCGGCAGGGCAGAGCCTCGGGAGGGGGCGAAGGTaGCCCGGGGCCGTGCGCTGGGTGCTGCTGCTGCGGTGGCGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: FRAIPAGQSLGRGRR*PGAVRWVLLLRWRR Trigger: CCGCCGCCACCGCAGCAGCAGCACCCAGCGCACGGCCCCGGGCAACCTTCGCCCCCTCCCGAGGCTCTGCCCTGCCGGGATGGCACGGAA 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CCA 72 bp | GGTGGCGGCGGCGGTGCCTGCGGTTGCAGCGGCTGCTaGGGTTGCGCGTGGAAACCGCGCCCCGCACTTGCG | + |
|
Preference number: 6 (lower is better) Translates to: GGGGGACGCSGC*GCAWKPRPALA Trigger: CGCAAGTGCGGGGCGCGGTTTCCACGCGCAACCCCAGCAGCCGCTGCAACCGCAGGCACCGCCGCCGCCACC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CCA 72 bp | GCGAGCCCATCGCGCCGTAGTACAGGTGCAGAGCGCTaGGGGGCGCCAGGATCCCCGGCATCGCAGGGCCCG | + |
|
Preference number: 6 (lower is better) Translates to: ASPSRRSTGAER*GAPGSPASQGP Trigger: CGGGCCCTGCGATGCCGGGGATCCTGGCGCCCCCCAGCGCTCTGCACCTGTACTACGGCGCGATGGGCTCGC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CAA 90 bp | GTTGCAGCGGCTGCTGGGGTTGCGCGTGGAAACCGCGCCCCGCACTaGCGGCGGGCGAGCCCATCGCGCCGTAGTACAGGTGCAGAGCGC | + |
|
Preference number: 6 (lower is better) Translates to: VAAAAGVARGNRAPH*RRASPSRRSTGAER Trigger: GCGCTCTGCACCTGTACTACGGCGCGATGGGCTCGCCCGCCGCAAGTGCGGGGCGCGGTTTCCACGCGCAACCCCAGCAGCCGCTGCAAC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS GCA 72 bp | CTGCTGGGGTTGCGCGTGGAAACCGCGCCCCGCACTTaGGGCGGGCGAGCCCATCGCGCCGTAGTACAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: LLGLRVETAPRT*GGRAHRAVVQV Trigger: CACCTGTACTACGGCGCGATGGGCTCGCCCGCCGCAAGTGCGGGGCGCGGTTTCCACGCGCAACCCCAGCAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CAA 72 bp | GCTGCTGGGGTTGCGCGTGGAAACCGCGCCCCGCACTaGCGGCGGGCGAGCCCATCGCGCCGTAGTACAGGT | + |
|
Preference number: 6 (lower is better) Translates to: AAGVARGNRAPH*RRASPSRRSTG Trigger: ACCTGTACTACGGCGCGATGGGCTCGCCCGCCGCAAGTGCGGGGCGCGGTTTCCACGCGCAACCCCAGCAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS GCA 72 bp | GGACCAAGCGCGCCGGCCTGGGGCTCGACGAGAGCGTaGAGGAAGCCTCCCTCCACCCGCTTCATGCGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: GPSAPAWGSTRA*RKPPSTRFMRF Trigger: GAAGCGCATGAAGCGGGTGGAGGGAGGCTTCCTGCACGCTCTCGTCGAGCCCCAGGCCGGCGCGCTTGGTCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000191647.2 ENSMUST00000191939.2 ENSMUST00000192650.6 ENSMUST00000192913.2 ENSMUST00000195555.2 |
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| CDS GCA 72 bp | CCTCCCCTAGGAGCTCAGTGGGCTGGTTGGATTCCGTaGCATCCCGGCAGGGCAGAGCCTCGGGAGGGGGCG | + |
|
Preference number: 6 (lower is better) Translates to: PPLGAQWAGWIP*HPGRAEPREGA Trigger: CGCCCCCTCCCGAGGCTCTGCCCTGCCGGGATGGCACGGAATCCAACCAGCCCACTGAGCTCCTAGGGGAGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CCA 72 bp | AGCGTAAGTGTAGGTGCCGGCCGCCGGGCAGTCCCCTaGCAGCGGGGCTGCAAAGAAAGCCGGGTCCTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: SVSVGAGRRAVP*QRGCKESRVLL Trigger: GAGCAGGACCCGGCTTTCTTTGCAGCCCCGCTGCCAGGGGACTGCCCGGCGGCCGGCACCTACACTTACGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
||
| CDS CCA 72 bp | TGCGGTCCACCTCCCCTAGGAGCTCAGTGGGCTGGTTaGATTCCGTGCCATCCCGGCAGGGCAGAGCCTCGG | + |
|
Preference number: 6 (lower is better) Translates to: CGPPPLGAQWAG*IPCHPGRAEPR Trigger: CCGAGGCTCTGCCCTGCCGGGATGGCACGGAATCCAACCAGCCCACTGAGCTCCTAGGGGAGGTGGACCGCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
||
| CDS CCA 72 bp | TCCGTGCGGTCCACCTCCCCTAGGAGCTCAGTGGGCTaGTTGGATTCCGTGCCATCCCGGCAGGGCAGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: SVRSTSPRSSVG*LDSVPSRQGRA Trigger: GGCTCTGCCCTGCCGGGATGGCACGGAATCCAACCAGCCCACTGAGCTCCTAGGGGAGGTGGACCGCACGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
||
| CDS CCA 72 bp | AGCGGGCGGCTCTACGGACACTGCATAGTCCGAGACTaGAGCGTAAGTGTAGGTGCCGGCCGCCGGGCAGTC | + |
|
Preference number: 6 (lower is better) Translates to: SGRLYGHCIVRD*SVSVGAGRRAV Trigger: GACTGCCCGGCGGCCGGCACCTACACTTACGCTCCAGTCTCGGACTATGCAGTGTCCGTAGAGCCGCCCGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
||
| CDS GCA 72 bp | CACTCGCATGGGGCCAGCGGGCGGCTCTACGGACACTaGATAGTCCGAGACTGGAGCGTAAGTGTAGGTGCC | + |
|
Preference number: 6 (lower is better) Translates to: HSHGASGRLYGH*IVRDWSVSVGA Trigger: GGCACCTACACTTACGCTCCAGTCTCGGACTATGCAGTGTCCGTAGAGCCGCCCGCTGGCCCCATGCGAGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
||
| CDS GCA 72 bp | GCCGCTTCTCTGCCAAGGTCAACGCCTTCCAAGACTTaGCTTGGGGAAAACTGGCTGGAGCCGGGCGCTGGC | + |
|
Preference number: 6 (lower is better) Translates to: AASLPRSTPSKT*LGENWLEPGAG Trigger: GCCAGCGCCCGGCTCCAGCCAGTTTTCCCCAAGGCAAGTCTTGGAAGGCGTTGACCTTGGCAGAGAAGCGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000191647.2 ENSMUST00000192650.6 |
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| CDS CAA 72 bp | GGCCGCTTCTCTGCCAAGGTCAACGCCTTCCAAGACTaGCCTTGGGGAAAACTGGCTGGAGCCGGGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: GRFSAKVNAFQD*PWGKLAGAGRW Trigger: CCAGCGCCCGGCTCCAGCCAGTTTTCCCCAAGGCAAGTCTTGGAAGGCGTTGACCTTGGCAGAGAAGCGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000191647.2 ENSMUST00000192650.6 |
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| CDS TCA 72 bp | GTCGGACACCACGGAGGAAATGGCTCCGTGGCTGTCTaGGAGGTTCACTCCGCAGTCGTGTCCCTGGTAGGG | + |
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Preference number: 6 (lower is better) Translates to: VGHHGGNGSVAV*EVHSAVVSLVG Trigger: CCCTACCAGGGACACGACTGCGGAGTGAACCTCTCAGACAGCCACGGAGCCATTTCCTCCGTGGTGTCCGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CCA 72 bp | GAGCTAGCGTCGGACACCACGGAGGAAATGGCTCCGTaGCTGTCTGAGAGGTTCACTCCGCAGTCGTGTCCC | + |
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Preference number: 6 (lower is better) Translates to: ELASDTTEEMAP*LSERFTPQSCP Trigger: GGGACACGACTGCGGAGTGAACCTCTCAGACAGCCACGGAGCCATTTCCTCCGTGGTGTCCGACGCTAGCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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| CDS CCA 72 bp | AGGTCAACGCCTTCCAAGACTTGCCTTGGGGAAAACTaGCTGGAGCCGGGCGCTGGCGCCAAGACCTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: RSTPSKTCLGEN*LEPGAGAKTSW Trigger: CCAAGAGGTCTTGGCGCCAGCGCCCGGCTCCAGCCAGTTTTCCCCAAGGCAAGTCTTGGAAGGCGTTGACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000191647.2 ENSMUST00000192650.6 |
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| CDS CCA 72 bp | AACTGGCTGGAGCCGGGCGCTGGCGCCAAGACCTCTTaGGGAAATAGGAAGGCTGAAATTCAGATGTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: NWLEPGAGAKTS*GNRKAEIQMSG Trigger: TCCAGACATCTGAATTTCAGCCTTCCTATTTCCCCAAGAGGTCTTGGCGCCAGCGCCCGGCTCCAGCCAGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000191647.2 ENSMUST00000192650.6 |
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| CDS GCA 72 bp | GCTTATACACAAAGGGCAGATACTGTTCGAATTCCGTaGGGTCCACCTCCCCTAGGAGCTCAGTGGGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: AYTQRADTVRIP*GPPPLGAQWAG Trigger: ACCAGCCCACTGAGCTCCTAGGGGAGGTGGACCGCACGGAATTCGAACAGTATCTGCCCTTTGTGTATAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027035.10 ENSMUST00000116652.8 ENSMUST00000192650.6 ENSMUST00000195555.2 |
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