Pregenerated sensors for SOX15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041287

Ensembl transcript IDs: ENSMUST00000047373.6

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TCCAGCGGAAGTCCCCCAGACGCTCCAGGGCTCCCGCCGGCCTCCTaGTCCTGGGGTCCTAAAGGCAAAGAGGCCGTGGAAGCCCGAGGA	+
Preference number: 5 (lower is better) Translates to: SSGSPPDAPGLPPAS*SWGPKGKEAVEARG Trigger: TCCTCGGGCTTCCACGGCCTCTTTGCCTTTAGGACCCCAGGAGCAGGAGGCCGGCGGGAGCCCTGGAGCGTCTGGGGGACTTCCGCTGGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047373.6
CDS CCA 90 bp	GGAAGTCCCCCAGACGCTCCAGGGCTCCCGCCGGCCTCCTGCTCCTaGGGTCCTAAAGGCAAAGAGGCCGTGGAAGCCCGAGGATGCAGG	+
Preference number: 5 (lower is better) Translates to: GSPPDAPGLPPASCS*GPKGKEAVEARGCR Trigger: CCTGCATCCTCGGGCTTCCACGGCCTCTTTGCCTTTAGGACCCCAGGAGCAGGAGGCCGGCGGGAGCCCTGGAGCGTCTGGGGGACTTCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047373.6
CDS CCA 90 bp	TCCCGCCGGCCTCCTGCTCCTGGGGTCCTAAAGGCAAAGAGGCCGTaGAAGCCCGAGGATGCAGGCTCCAAGTCTCTGCTTGTGAGGAGC	+
Preference number: 5 (lower is better) Translates to: SRRPPAPGVLKAKRP*KPEDAGSKSLLVRS Trigger: GCTCCTCACAAGCAGAGACTTGGAGCCTGCATCCTCGGGCTTCCACGGCCTCTTTGCCTTTAGGACCCCAGGAGCAGGAGGCCGGCGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047373.6
CDS GCA 72 bp	AGTCCCCCAGACGCTCCAGGGCTCCCGCCGGCCTCCTaGTCCTGGGGTCCTAAAGGCAAAGAGGCCGTGGAA	+
Preference number: 6 (lower is better) Translates to: SPPDAPGLPPAS*SWGPKGKEAVE Trigger: TTCCACGGCCTCTTTGCCTTTAGGACCCCAGGAGCAGGAGGCCGGCGGGAGCCCTGGAGCGTCTGGGGGACT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047373.6
CDS GCA 72 bp	TCTGAGGGAAGGTGCATGGTAAGGGGGCCTCCGGTCTaGAGTGGGAAGAGGTGTAACTGCCAGGCAGGTAGG	+
Preference number: 6 (lower is better) Translates to: SEGRCMVRGPPV*SGKRCNCQAGR Trigger: CCTACCTGCCTGGCAGTTACACCTCTTCCCACTGCAGACCGGAGGCCCCCTTACCATGCACCTTCCCTCAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047373.6
CDS GCA 72 bp	GGTCCTAAAGGCAAAGAGGCCGTGGAAGCCCGAGGATaGAGGCTCCAAGTCTCTGCTTGTGAGGAGCTGGTC	+
Preference number: 6 (lower is better) Translates to: GPKGKEAVEARG*RLQVSACEELV Trigger: GACCAGCTCCTCACAAGCAGAGACTTGGAGCCTGCATCCTCGGGCTTCCACGGCCTCTTTGCCTTTAGGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047373.6

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